Gene annotation
Transcriptome id Sobic.002G254500.1
Synonym Sb02g028970
Functional annotation oxidoreductase, putative, expressed
UniProt A0A1B6QDG1
Pfam PF05071
Panther DB PTHR12910 PTHR12910:SF1
NCBI CDD -
KEGG Orthology K18160; NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 2
Gene Ontology GO:0016020; membrane GO:0009055electron transfer activity GO:0008137NADH dehydrogenase (ubiquinone) activity


Orthologs (automatic annotation)
TAIR AT4G26965 : NADH:ubiquinone oxidoreductase, 17.2kDa subunit
RAP-DB (Rice) LOC_Os09g32430.1 : oxidoreductase, putative, expressed
MaizeGDB (Corn) Zm00025a014269
Brachypodium KQJ90870
Barley HORVU3Hr1G016700.41 , HORVU3Hr1G016700.5 , HORVU3Hr1G016700.7 , HORVU3Hr1G016700.6 , HORVU3Hr1G016700.1 , HORVU3Hr1G016700.3 , HORVU3Hr1G016700.2 , HORVU3Hr1G016700.9 , HORVU3Hr1G016700.8 , HORVU3Hr1G016700.39 , HORVU3Hr1G016700.38 , HORVU3Hr1G016700.37 , HORVU3Hr1G016700.36 , HORVU3Hr1G016700.35 , HORVU3Hr1G016700.34 , HORVU3Hr1G016700.33 , HORVU3Hr1G016700.31 , HORVU3Hr1G016700.30 , HORVU3Hr1G016700.11 , HORVU3Hr1G016700.10 , HORVU3Hr1G016700.13 , HORVU3Hr1G016700.12 , HORVU3Hr1G016700.15 , HORVU3Hr1G016700.14 , HORVU3Hr1G016700.17 , HORVU3Hr1G016700.16 , HORVU3Hr1G016700.19 , HORVU3Hr1G016700.18 , HORVU5Hr1G075260.3 , HORVU5Hr1G075260.2 , HORVU5Hr1G075260.1 , HORVU3Hr1G016700.28 , HORVU3Hr1G016700.29 , HORVU3Hr1G016700.42 , HORVU3Hr1G016700.25 , HORVU3Hr1G016700.40 , HORVU3Hr1G016700.27 , HORVU3Hr1G016700.20 , HORVU3Hr1G016700.21 , HORVU3Hr1G016700.22 , HORVU3Hr1G016700.23 , HORVU3Hr1G016700.24 , HORVU3Hr1G016700.26
Wheat TraesCS5D02G284900 , TraesCS5A02G278000 , TraesCS5B02G277300
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.002G254500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G118400 expressed protein -
2 Sobic.006G029400 GDSL-like lipase/acylhydrolase, putative, expressed -
3 Sobic.001G116000 dynamin family protein, putative, expressed K01528: dynamin 1/3
4 Sobic.007G022700 proteasome subunit, putative, expressed K12177: COPS3, COP9 signalosome complex subunit 3
5 Sobic.010G277000 exosome complex exonuclease, putative, expressed K12589: RRP42, exosome complex component RRP42
6 Sobic.001G460500 T-complex protein, putative, expressed K09495: CCT3, T-complex protein 1 subunit gamma
7 Sobic.009G207200 ER lumen protein retaining receptor, putative, expressed K10949: ER lumen protein retaining receptor
8 Sobic.001G035400 ras-related protein, putative, expressed K07901: RAB8A, Ras-related protein Rab-8A
9 Sobic.002G423500 T-complex protein, putative, expressed K09498: T-complex protein 1 subunit zeta
10 Sobic.001G530800 T-complex protein, putative, expressed K09496: T-complex protein 1 subunit delta
11 Sobic.005G129201 - -
12 Sobic.008G084100 adenylate kinase, putative, expressed K00939: adk, adenylate kinase
13 Sobic.007G173000 transmembrane 9 superfamily member, putative, expressed K17086: transmembrane 9 superfamily member 2/4
14 Sobic.004G215700 RAN GTPase-activating protein 1, putative, expressed K14319: Ran GTPase-activating protein 1
15 Sobic.008G093200 expressed protein -
16 Sobic.009G151800 polypyrimidine tract-binding protein, putative, expressed K14948: PTBP2, polypyrimidine tract-binding protein 2
17 Sobic.005G163700 T-complex protein, putative, expressed K09500: T-complex protein 1 subunit theta
18 Sobic.009G041800 PPR repeat domain containing protein, putative, expressed -
19 Sobic.002G313600 src homology-3 domain protein 3, putative, expressed -
20 Sobic.003G125100 uncharacterized Cys-rich domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic002G254500 Sobic002G254500 Sobic003G118400 Sobic003G118400 Sobic002G254500--Sobic003G118400 Sobic006G029400 Sobic006G029400 Sobic002G254500--Sobic006G029400 Sobic001G116000 Sobic001G116000 Sobic002G254500--Sobic001G116000 Sobic007G022700 Sobic007G022700 Sobic002G254500--Sobic007G022700 Sobic010G277000 Sobic010G277000 Sobic002G254500--Sobic010G277000 Sobic001G460500 Sobic001G460500 Sobic002G254500--Sobic001G460500 Sobic009G207200 Sobic009G207200 Sobic002G254500--Sobic009G207200 Sobic001G035400 Sobic001G035400 Sobic002G254500--Sobic001G035400 Sobic002G423500 Sobic002G423500 Sobic002G254500--Sobic002G423500 Sobic003G118400--Sobic002G254500 Sobic001G382200 Sobic001G382200 Sobic003G118400--Sobic001G382200 Sobic001G530800 Sobic001G530800 Sobic003G118400--Sobic001G530800 Sobic004G249300 Sobic004G249300 Sobic003G118400--Sobic004G249300 Sobic002G116500 Sobic002G116500 Sobic003G118400--Sobic002G116500 Sobic003G125100 Sobic003G125100 Sobic003G118400--Sobic003G125100 Sobic009G169200 Sobic009G169200 Sobic003G118400--Sobic009G169200 Sobic006G094600 Sobic006G094600 Sobic003G118400--Sobic006G094600 Sobic003G222700 Sobic003G222700 Sobic003G118400--Sobic003G222700 Sobic002G297600 Sobic002G297600 Sobic006G029400--Sobic002G297600 Sobic004G075200 Sobic004G075200 Sobic006G029400--Sobic004G075200 Sobic006G029400--Sobic002G254500 Sobic009G041800 Sobic009G041800 Sobic006G029400--Sobic009G041800 Sobic001G413100 Sobic001G413100 Sobic006G029400--Sobic001G413100 Sobic002G399900 Sobic002G399900 Sobic006G029400--Sobic002G399900 Sobic006G029400--Sobic001G035400 Sobic003G008600 Sobic003G008600 Sobic006G029400--Sobic003G008600 Sobic002G264300 Sobic002G264300 Sobic006G029400--Sobic002G264300 Sobic001G196100 Sobic001G196100 Sobic001G116000--Sobic001G196100 Sobic001G116000--Sobic001G035400 Sobic007G044400 Sobic007G044400 Sobic001G116000--Sobic007G044400 Sobic007G048700 Sobic007G048700 Sobic001G116000--Sobic007G048700 Sobic002G313600 Sobic002G313600 Sobic001G116000--Sobic002G313600 Sobic008G084100 Sobic008G084100 Sobic001G116000--Sobic008G084100 Sobic001G026600 Sobic001G026600 Sobic001G116000--Sobic001G026600 Sobic004G031800 Sobic004G031800 Sobic001G116000--Sobic004G031800 Sobic004G184000 Sobic004G184000 Sobic001G116000--Sobic004G184000 Sobic004G256300 Sobic004G256300 Sobic007G022700--Sobic004G256300 Sobic007G022700--Sobic003G222700 Sobic003G085500 Sobic003G085500 Sobic007G022700--Sobic003G085500 Sobic002G232400 Sobic002G232400 Sobic007G022700--Sobic002G232400 Sobic007G022700--Sobic009G207200 Sobic004G186100 Sobic004G186100 Sobic007G022700--Sobic004G186100 Sobic001G191900 Sobic001G191900 Sobic007G022700--Sobic001G191900 Sobic006G259900 Sobic006G259900 Sobic007G022700--Sobic006G259900 Sobic003G005900 Sobic003G005900 Sobic007G022700--Sobic003G005900 Sobic010G277000--Sobic008G084100 Sobic007G191600 Sobic007G191600 Sobic010G277000--Sobic007G191600 Sobic010G277000--Sobic001G035400 Sobic001G214900 Sobic001G214900 Sobic010G277000--Sobic001G214900 Sobic003G238500 Sobic003G238500 Sobic010G277000--Sobic003G238500 Sobic010G277000--Sobic001G026600 Sobic002G054000 Sobic002G054000 Sobic010G277000--Sobic002G054000 Sobic003G205400 Sobic003G205400 Sobic010G277000--Sobic003G205400 Sobic005G027300 Sobic005G027300 Sobic010G277000--Sobic005G027300 Sobic005G163700 Sobic005G163700 Sobic001G460500--Sobic005G163700 Sobic001G460500--Sobic002G423500 Sobic002G014400 Sobic002G014400 Sobic001G460500--Sobic002G014400 Sobic004G208500 Sobic004G208500 Sobic001G460500--Sobic004G208500 Sobic010G081700 Sobic010G081700 Sobic001G460500--Sobic010G081700 Sobic004G047200 Sobic004G047200 Sobic001G460500--Sobic004G047200 Sobic002G412700 Sobic002G412700 Sobic001G460500--Sobic002G412700 Sobic001G251600 Sobic001G251600 Sobic001G460500--Sobic001G251600 Sobic003G099300 Sobic003G099300 Sobic001G460500--Sobic003G099300 Sobic009G207200--Sobic006G094600 Sobic001G061200 Sobic001G061200 Sobic009G207200--Sobic001G061200 Sobic001G358500 Sobic001G358500 Sobic009G207200--Sobic001G358500 Sobic002G029300 Sobic002G029300 Sobic009G207200--Sobic002G029300 Sobic009G207200--Sobic003G005900 Sobic007G217400 Sobic007G217400 Sobic009G207200--Sobic007G217400 Sobic008G072200 Sobic008G072200 Sobic009G207200--Sobic008G072200 Sobic009G207200--Sobic004G075200 Sobic009G207200--Sobic007G022700 Sobic004G344800 Sobic004G344800 Sobic001G035400--Sobic004G344800 Sobic006G203900 Sobic006G203900 Sobic001G035400--Sobic006G203900 Sobic001G035400--Sobic008G084100 Sobic007G092100 Sobic007G092100 Sobic001G035400--Sobic007G092100 Sobic009G164700 Sobic009G164700 Sobic001G035400--Sobic009G164700 Sobic002G087000 Sobic002G087000 Sobic001G035400--Sobic002G087000 Sobic001G073600 Sobic001G073600 Sobic001G035400--Sobic001G073600 Sobic001G443200 Sobic001G443200 Sobic001G035400--Sobic001G443200 Sobic001G035400--Sobic001G116000 Sobic002G423500--Sobic005G163700 Sobic002G423500--Sobic004G047200 Sobic002G423500--Sobic002G014400 Sobic002G423500--Sobic001G460500 Sobic004G326600 Sobic004G326600 Sobic002G423500--Sobic004G326600 Sobic004G215700 Sobic004G215700 Sobic002G423500--Sobic004G215700 Sobic001G522000 Sobic001G522000 Sobic002G423500--Sobic001G522000 Sobic006G041100 Sobic006G041100 Sobic002G423500--Sobic006G041100 Sobic001G467100 Sobic001G467100 Sobic002G423500--Sobic001G467100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.