Gene annotation
Transcriptome id Sobic.003G338300.1
Synonym
Functional annotation -
UniProt A0A1B6Q6S0
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) -
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G084000 transporter family protein, putative, expressed -
2 Sobic.002G160400 Glucose-1-phosphate adenylyltransferase small subunit(PubMedID : 26186930)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glucose-1-phosphate adenylyltransferase large subunit, chloroplast precursor, putative, expressed K00975: glucose-1-phosphate adenylyltransferase
3 Sobic.004G188800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@expressed protein -
4 Sobic.009G212600 expressed protein K00294: 1-pyrroline-5-carboxylate dehydrogenase
5 Sobic.005G079900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@F-box domain containing protein, expressed -
6 Sobic.001G395700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ proteins of unknown function domain containing protein, expressed -
7 Sobic.005G046250 - -
8 Sobic.003G029800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@RNA-dependent RNA polymerase, putative, expressed K11699: RDR, RNA-dependent RNA polymerase
9 Sobic.009G234800 aspartic proteinase oryzasin-1 precursor, putative, expressed K08245: phytepsin
10 Sobic.007G186200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@solute carrier family 35 member F1, putative, expressed K15287: solute carrier family 35, member F1/2
11 Sobic.009G208100 CAMK_KIN1/SNF1/Nim1_like_AMPKh.3 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07198: PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit
12 Sobic.001G015500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@inner membrane protein, putative, expressed K03217: yidC, spoIIIJ, OXA1, YidC/Oxa1 family membrane protein insertase
13 Sobic.003G226200 neutral ceramidase precursor, putative, expressed K12349: neutral ceramidase
14 Sobic.002G215700 similar to Aldehyde dehydrogenase(PubMedID : 29862293)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Aldehyde dehydrogenase B4(PubMedID : 26320239)@Zinc finger(C3H4-type Ring finger) family protein(PubMedID : 26320239)@a glutamate S-semialdehyde dehydrogenase(PubMedID : 26320239)@aldehyde dehydrogenase, putative, expressed K14085: aldehyde dehydrogenase family 7 member A1
15 Sobic.005G152000 aminotransferase, classes I and II, domain containing protein, expressed -
16 Sobic.001G375600 transmembrane protein, putative, expressed -
17 Sobic.005G058900 zinc finger, C3HC4 type domain containing protein, expressed -
18 Sobic.003G303300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aminotransferase, classes I and II, domain containing protein, expressed K14454: aspartate aminotransferase, cytoplasmic
19 Sobic.004G071500 OsFBX49 - F-box domain containing protein, expressed -
20 Sobic.006G139000 carboxyvinyl-carboxyphosphonate phosphorylmutase, putative, expressed -


Gene co-expression network
sample Sobic003G338300 Sobic003G338300 Sobic003G084000 Sobic003G084000 Sobic003G338300--Sobic003G084000 Sobic002G160400 Sobic002G160400 Sobic003G338300--Sobic002G160400 Sobic004G188800 Sobic004G188800 Sobic003G338300--Sobic004G188800 Sobic009G212600 Sobic009G212600 Sobic003G338300--Sobic009G212600 Sobic005G079900 Sobic005G079900 Sobic003G338300--Sobic005G079900 Sobic001G395700 Sobic001G395700 Sobic003G338300--Sobic001G395700 Sobic005G046250 Sobic005G046250 Sobic003G338300--Sobic005G046250 Sobic003G029800 Sobic003G029800 Sobic003G338300--Sobic003G029800 Sobic009G234800 Sobic009G234800 Sobic003G338300--Sobic009G234800 Sobic003G084000--Sobic009G212600 Sobic009G208100 Sobic009G208100 Sobic003G084000--Sobic009G208100 Sobic004G032800 Sobic004G032800 Sobic003G084000--Sobic004G032800 Sobic002G313900 Sobic002G313900 Sobic003G084000--Sobic002G313900 Sobic003G084000--Sobic003G338300 Sobic005G197100 Sobic005G197100 Sobic003G084000--Sobic005G197100 Sobic003G084000--Sobic005G079900 Sobic003G304200 Sobic003G304200 Sobic003G084000--Sobic003G304200 Sobic009G166600 Sobic009G166600 Sobic003G084000--Sobic009G166600 Sobic002G160400--Sobic003G338300 Sobic006G262501 Sobic006G262501 Sobic002G160400--Sobic006G262501 Sobic001G034500 Sobic001G034500 Sobic002G160400--Sobic001G034500 Sobic010G222900 Sobic010G222900 Sobic002G160400--Sobic010G222900 Sobic004G071500 Sobic004G071500 Sobic002G160400--Sobic004G071500 Sobic003G183466 Sobic003G183466 Sobic002G160400--Sobic003G183466 Sobic007G194500 Sobic007G194500 Sobic002G160400--Sobic007G194500 Sobic004G033200 Sobic004G033200 Sobic002G160400--Sobic004G033200 Sobic003G379900 Sobic003G379900 Sobic002G160400--Sobic003G379900 Sobic004G188800--Sobic003G338300 Sobic004G188800--Sobic003G029800 Sobic003G235400 Sobic003G235400 Sobic004G188800--Sobic003G235400 Sobic001G280000 Sobic001G280000 Sobic004G188800--Sobic001G280000 Sobic001G227800 Sobic001G227800 Sobic004G188800--Sobic001G227800 Sobic002G215700 Sobic002G215700 Sobic004G188800--Sobic002G215700 Sobic003G148800 Sobic003G148800 Sobic004G188800--Sobic003G148800 Sobic002G058500 Sobic002G058500 Sobic004G188800--Sobic002G058500 Sobic004G101900 Sobic004G101900 Sobic004G188800--Sobic004G101900 Sobic009G212600--Sobic003G084000 Sobic009G212600--Sobic005G197100 Sobic009G212600--Sobic004G032800 Sobic009G212600--Sobic009G166600 Sobic009G212600--Sobic003G304200 Sobic001G130200 Sobic001G130200 Sobic009G212600--Sobic001G130200 Sobic004G096700 Sobic004G096700 Sobic009G212600--Sobic004G096700 Sobic003G226200 Sobic003G226200 Sobic009G212600--Sobic003G226200 Sobic006G139000 Sobic006G139000 Sobic009G212600--Sobic006G139000 Sobic005G079900--Sobic004G101900 Sobic005G079900--Sobic009G234800 Sobic005G231900 Sobic005G231900 Sobic005G079900--Sobic005G231900 Sobic003G303300 Sobic003G303300 Sobic005G079900--Sobic003G303300 Sobic001G488500 Sobic001G488500 Sobic005G079900--Sobic001G488500 Sobic001G512800 Sobic001G512800 Sobic005G079900--Sobic001G512800 Sobic005G079900--Sobic002G215700 Sobic007G068100 Sobic007G068100 Sobic005G079900--Sobic007G068100 Sobic004G246200 Sobic004G246200 Sobic005G079900--Sobic004G246200 Sobic001G395700--Sobic002G058500 Sobic003G012300 Sobic003G012300 Sobic001G395700--Sobic003G012300 Sobic001G395700--Sobic002G215700 Sobic001G395700--Sobic006G139000 Sobic001G395700--Sobic001G227800 Sobic002G195000 Sobic002G195000 Sobic001G395700--Sobic002G195000 Sobic001G395700--Sobic004G101900 Sobic001G395700--Sobic005G231900 Sobic001G395700--Sobic003G226200 Sobic005G046250--Sobic004G071500 Sobic006G239400 Sobic006G239400 Sobic005G046250--Sobic006G239400 Sobic005G046250--Sobic009G208100 Sobic004G236200 Sobic004G236200 Sobic005G046250--Sobic004G236200 Sobic003G269800 Sobic003G269800 Sobic005G046250--Sobic003G269800 Sobic001G478800 Sobic001G478800 Sobic005G046250--Sobic001G478800 Sobic006G203300 Sobic006G203300 Sobic005G046250--Sobic006G203300 Sobic004G147500 Sobic004G147500 Sobic005G046250--Sobic004G147500 Sobic003G314300 Sobic003G314300 Sobic005G046250--Sobic003G314300 Sobic007G103666 Sobic007G103666 Sobic003G029800--Sobic007G103666 Sobic001G520400 Sobic001G520400 Sobic003G029800--Sobic001G520400 Sobic009G229800 Sobic009G229800 Sobic003G029800--Sobic009G229800 Sobic004G060900 Sobic004G060900 Sobic003G029800--Sobic004G060900 Sobic004G087500 Sobic004G087500 Sobic003G029800--Sobic004G087500 Sobic005G024700 Sobic005G024700 Sobic003G029800--Sobic005G024700 Sobic009G057300 Sobic009G057300 Sobic003G029800--Sobic009G057300 Sobic003G428400 Sobic003G428400 Sobic003G029800--Sobic003G428400 Sobic003G029800--Sobic004G188800 Sobic009G234800--Sobic005G079900 Sobic009G234800--Sobic003G226200 Sobic006G119200 Sobic006G119200 Sobic009G234800--Sobic006G119200 Sobic009G234800--Sobic005G231900 Sobic009G234800--Sobic001G488500 Sobic009G234800--Sobic001G512800 Sobic009G234800--Sobic004G246200 Sobic010G016400 Sobic010G016400 Sobic009G234800--Sobic010G016400 Sobic007G041400 Sobic007G041400 Sobic009G234800--Sobic007G041400
Octagon: transcription factors


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