Gene annotation
Transcriptome id Sobic.004G188800.2
Synonym Sb04g023720
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)" (PubMedID : 27586543)
expressed protein
UniProt A0A1Z5RNM5
Pfam PF00083
Panther DB PTHR23500 PTHR23500:SF173
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT1G34580 : Major facilitator superfamily protein
RAP-DB (Rice) LOC_Os02g36490.2 : expressed protein
MaizeGDB (Corn) Zm00025a020787 , Zm00025a054080 , Zm00025a020790 , Zm00025a046980
Brachypodium KQJ82916 , KQJ82921 , KQK20404 , KQJ90241 , KQJ82915 , KQJ82919 , KQJ99960 , KQK00003 , KQK00004
Barley HORVU1Hr1G013480.5 , HORVU1Hr1G013480.4 , HORVU1Hr1G013480.3 , HORVU1Hr1G013480.2 , HORVU1Hr1G013480.1 , HORVU5Hr1G065630.1 , HORVU5Hr1G065630.3 , HORVU5Hr1G065630.2 , HORVU5Hr1G065630.5 , HORVU5Hr1G065630.4 , HORVU1Hr1G075970.6 , HORVU1Hr1G075970.4 , HORVU1Hr1G075970.3 , HORVU1Hr1G075970.1 , HORVU2Hr1G107660.8 , HORVU2Hr1G107660.6 , HORVU2Hr1G107660.7 , HORVU2Hr1G107660.4 , HORVU2Hr1G107660.5 , HORVU2Hr1G107660.2 , HORVU2Hr1G107660.3 , HORVU2Hr1G107660.1 , HORVU1Hr1G075970.5 , HORVU1Hr1G075970.2
Wheat TraesCS1A02G064900 , TraesCS1A02G064900 , TraesCS2A02G478600 , TraesCS5D02G234100 , TraesCS5A02G226500 , TraesCS5D02G549900 , TraesCS5B02G225100 , TraesCS5A02G226800 , TraesCS1D02G065700 , TraesCS4A02G314900 , TraesCS5D02G233900 , TraesCS1D02G343200 , TraesCS5B02G225300 , TraesCS5D02G234200 , TraesCS5A02G226700 , TraesCS1A02G341100 , TraesCS5B02G225400
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.004G188800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G338300 - -
2 Sobic.003G029800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@RNA-dependent RNA polymerase, putative, expressed K11699: RDR, RNA-dependent RNA polymerase
3 Sobic.003G235400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ATPCME, putative, expressed K15889: prenylcysteine alpha-carboxyl methylesterase
4 Sobic.001G280000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsSCP46 - Putative Serine Carboxypeptidase homologue, expressed K16296: serine carboxypeptidase-like clade I
5 Sobic.001G227800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@expressed protein -
6 Sobic.002G215700 similar to Aldehyde dehydrogenase(PubMedID : 29862293)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Aldehyde dehydrogenase B4(PubMedID : 26320239)@Zinc finger(C3H4-type Ring finger) family protein(PubMedID : 26320239)@a glutamate S-semialdehyde dehydrogenase(PubMedID : 26320239)@aldehyde dehydrogenase, putative, expressed K14085: aldehyde dehydrogenase family 7 member A1
7 Sobic.003G148800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed K09699: DBT, 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase)
8 Sobic.002G058500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@FAD-linked oxidoreductase protein, putative, expressed K18204: D-2-hydroxyglutarate dehydrogenase
9 Sobic.004G101900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@citrate synthase, putative, expressed K01647: CS, citrate synthase
10 Sobic.003G084000 transporter family protein, putative, expressed -
11 Sobic.006G226400 leucoanthocyanidin reductase, putative, expressed -
12 Sobic.001G395700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ proteins of unknown function domain containing protein, expressed -
13 Sobic.005G079900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@F-box domain containing protein, expressed -
14 Sobic.002G304000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@nitrilase, putative, expressed K01431: UPB1, beta-ureidopropionase
15 Sobic.009G226300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
16 Sobic.006G100332 - -
17 Sobic.001G015500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@inner membrane protein, putative, expressed K03217: yidC, spoIIIJ, OXA1, YidC/Oxa1 family membrane protein insertase
18 Sobic.001G150600 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K13606: NOL, chlorophyll(ide) b reductase
19 Sobic.006G139000 carboxyvinyl-carboxyphosphonate phosphorylmutase, putative, expressed -
20 Sobic.009G153000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@actin, putative, expressed K10355: actin, other eukaryote


Gene co-expression network
sample Sobic004G188800 Sobic004G188800 Sobic003G338300 Sobic003G338300 Sobic004G188800--Sobic003G338300 Sobic003G029800 Sobic003G029800 Sobic004G188800--Sobic003G029800 Sobic003G235400 Sobic003G235400 Sobic004G188800--Sobic003G235400 Sobic001G280000 Sobic001G280000 Sobic004G188800--Sobic001G280000 Sobic001G227800 Sobic001G227800 Sobic004G188800--Sobic001G227800 Sobic002G215700 Sobic002G215700 Sobic004G188800--Sobic002G215700 Sobic003G148800 Sobic003G148800 Sobic004G188800--Sobic003G148800 Sobic002G058500 Sobic002G058500 Sobic004G188800--Sobic002G058500 Sobic004G101900 Sobic004G101900 Sobic004G188800--Sobic004G101900 Sobic003G084000 Sobic003G084000 Sobic003G338300--Sobic003G084000 Sobic002G160400 Sobic002G160400 Sobic003G338300--Sobic002G160400 Sobic003G338300--Sobic004G188800 Sobic009G212600 Sobic009G212600 Sobic003G338300--Sobic009G212600 Sobic005G079900 Sobic005G079900 Sobic003G338300--Sobic005G079900 Sobic001G395700 Sobic001G395700 Sobic003G338300--Sobic001G395700 Sobic005G046250 Sobic005G046250 Sobic003G338300--Sobic005G046250 Sobic003G338300--Sobic003G029800 Sobic009G234800 Sobic009G234800 Sobic003G338300--Sobic009G234800 Sobic007G103666 Sobic007G103666 Sobic003G029800--Sobic007G103666 Sobic001G520400 Sobic001G520400 Sobic003G029800--Sobic001G520400 Sobic009G229800 Sobic009G229800 Sobic003G029800--Sobic009G229800 Sobic004G060900 Sobic004G060900 Sobic003G029800--Sobic004G060900 Sobic004G087500 Sobic004G087500 Sobic003G029800--Sobic004G087500 Sobic005G024700 Sobic005G024700 Sobic003G029800--Sobic005G024700 Sobic009G057300 Sobic009G057300 Sobic003G029800--Sobic009G057300 Sobic003G428400 Sobic003G428400 Sobic003G029800--Sobic003G428400 Sobic003G029800--Sobic004G188800 Sobic002G261600 Sobic002G261600 Sobic003G235400--Sobic002G261600 Sobic006G012000 Sobic006G012000 Sobic003G235400--Sobic006G012000 Sobic007G053100 Sobic007G053100 Sobic003G235400--Sobic007G053100 Sobic002G075000 Sobic002G075000 Sobic003G235400--Sobic002G075000 Sobic003G235400--Sobic004G188800 Sobic001G125400 Sobic001G125400 Sobic003G235400--Sobic001G125400 Sobic006G251500 Sobic006G251500 Sobic003G235400--Sobic006G251500 Sobic003G384600 Sobic003G384600 Sobic003G235400--Sobic003G384600 Sobic003G427300 Sobic003G427300 Sobic003G235400--Sobic003G427300 Sobic006G139000 Sobic006G139000 Sobic001G280000--Sobic006G139000 Sobic001G417600 Sobic001G417600 Sobic001G280000--Sobic001G417600 Sobic001G280000--Sobic002G058500 Sobic001G280000--Sobic001G227800 Sobic001G162700 Sobic001G162700 Sobic001G280000--Sobic001G162700 Sobic005G019800 Sobic005G019800 Sobic001G280000--Sobic005G019800 Sobic010G098100 Sobic010G098100 Sobic001G280000--Sobic010G098100 Sobic001G251900 Sobic001G251900 Sobic001G280000--Sobic001G251900 Sobic003G259200 Sobic003G259200 Sobic001G280000--Sobic003G259200 Sobic001G227800--Sobic002G215700 Sobic009G226300 Sobic009G226300 Sobic001G227800--Sobic009G226300 Sobic009G054500 Sobic009G054500 Sobic001G227800--Sobic009G054500 Sobic007G187300 Sobic007G187300 Sobic001G227800--Sobic007G187300 Sobic001G227800--Sobic003G259200 Sobic002G304000 Sobic002G304000 Sobic001G227800--Sobic002G304000 Sobic005G018500 Sobic005G018500 Sobic001G227800--Sobic005G018500 Sobic006G100332 Sobic006G100332 Sobic001G227800--Sobic006G100332 Sobic003G219600 Sobic003G219600 Sobic001G227800--Sobic003G219600 Sobic002G215700--Sobic001G227800 Sobic002G215700--Sobic009G054500 Sobic002G215700--Sobic009G226300 Sobic002G215700--Sobic004G101900 Sobic002G215700--Sobic002G304000 Sobic002G215700--Sobic006G100332 Sobic003G138200 Sobic003G138200 Sobic002G215700--Sobic003G138200 Sobic002G215700--Sobic003G148800 Sobic002G215700--Sobic005G018500 Sobic003G148800--Sobic009G226300 Sobic003G148800--Sobic009G054500 Sobic001G325200 Sobic001G325200 Sobic003G148800--Sobic001G325200 Sobic004G321800 Sobic004G321800 Sobic003G148800--Sobic004G321800 Sobic003G148800--Sobic002G304000 Sobic003G148800--Sobic005G018500 Sobic001G150600 Sobic001G150600 Sobic003G148800--Sobic001G150600 Sobic003G148800--Sobic006G100332 Sobic006G030700 Sobic006G030700 Sobic003G148800--Sobic006G030700 Sobic002G058500--Sobic006G139000 Sobic002G058500--Sobic001G227800 Sobic002G058500--Sobic001G395700 Sobic002G058500--Sobic005G019800 Sobic002G058500--Sobic002G215700 Sobic002G058500--Sobic004G101900 Sobic003G226200 Sobic003G226200 Sobic002G058500--Sobic003G226200 Sobic004G124200 Sobic004G124200 Sobic002G058500--Sobic004G124200 Sobic002G058500--Sobic001G280000 Sobic004G101900--Sobic002G304000 Sobic004G101900--Sobic002G215700 Sobic004G101900--Sobic001G325200 Sobic004G101900--Sobic009G226300 Sobic004G101900--Sobic009G054500 Sobic008G062200 Sobic008G062200 Sobic004G101900--Sobic008G062200 Sobic004G101900--Sobic003G148800 Sobic004G101900--Sobic004G124200 Sobic001G015500 Sobic001G015500 Sobic004G101900--Sobic001G015500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.