Gene annotation
Transcriptome id Sobic.003G029800.1
Synonym Sb03g002800
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
RNA-dependent RNA polymerase, putative, expressed
UniProt C5XLU8
Pfam PF05183
Panther DB PTHR23079 PTHR23079:SF13
NCBI CDD KOG0988; RNA-directed RNA polymerase QDE-1 required for posttranscriptional gene silencing and RNA interference
KEGG Orthology K11699; RDR, RNA-dependent RNA polymerase
Gene Ontology GO:0003968; RNA-directed 5'-3' RNA polymerase activity


Orthologs (automatic annotation)
TAIR AT2G19930 : RNA-dependent RNA polymerase family protein
RAP-DB (Rice) LOC_Os01g10140.2 : RNA-dependent RNA polymerase, putative, expressed
MaizeGDB (Corn) Zm00025a012332
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G103666 - -
2 Sobic.001G520400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@RING-H2 finger protein ATL2A, putative, expressed -
3 Sobic.009G229800 Uncharacterized gene family(PubMedID : 29126242)@"Causal gene for dw1, a putative membrane protein of unknown function"(PubMedID : 26963094)@expressed protein -
4 Sobic.004G060900 STRUBBELIG-RECEPTOR FAMILY 3 precursor, putative, expressed -
5 Sobic.004G087500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plastidic ATP/ADP-transporter, putative, expressed K03301: ATP:ADP antiporter, AAA family
6 Sobic.005G024700 major facilitator superfamily antiporter, putative, expressed -
7 Sobic.009G057300 acyl-coenzyme A dehydrogenase, mitochondrial precursor, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
8 Sobic.003G428400 beta-galactosidase, putative, expressed K01190: beta-galactosidase
9 Sobic.004G188800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@expressed protein -
10 Sobic.003G148800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed K09699: DBT, 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase)
11 Sobic.001G015500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@inner membrane protein, putative, expressed K03217: yidC, spoIIIJ, OXA1, YidC/Oxa1 family membrane protein insertase
12 Sobic.004G321800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@saccharopine dehydrogenase, putative, expressed K14157: alpha-aminoadipic semialdehyde synthase
13 Sobic.001G474500 mitochondrial carrier protein, putative, expressed -
14 Sobic.007G068100 aconitate hydratase protein, putative, expressed K01681: ACO, aconitate hydratase
15 Sobic.001G069900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CBS domain containing membrane protein, putative, expressed K00088: IMPDH, IMP dehydrogenase
16 Sobic.001G325200 Expressed in drought and oxidative stress(PubMedID : 29862293)@aldehyde oxidase, putative, expressed K00106: xanthine dehydrogenase/oxidase
17 Sobic.001G375600 transmembrane protein, putative, expressed -
18 Sobic.001G438600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@dihydrodipicolinate reductase, putative, expressed K00215: 4-hydroxy-tetrahydrodipicolinate reductase
19 Sobic.003G338300 - -
20 Sobic.003G061800 glutaryl-CoA dehydrogenase, mitochondrial precursor, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase


Gene co-expression network
sample Sobic003G029800 Sobic003G029800 Sobic007G103666 Sobic007G103666 Sobic003G029800--Sobic007G103666 Sobic001G520400 Sobic001G520400 Sobic003G029800--Sobic001G520400 Sobic009G229800 Sobic009G229800 Sobic003G029800--Sobic009G229800 Sobic004G060900 Sobic004G060900 Sobic003G029800--Sobic004G060900 Sobic004G087500 Sobic004G087500 Sobic003G029800--Sobic004G087500 Sobic005G024700 Sobic005G024700 Sobic003G029800--Sobic005G024700 Sobic009G057300 Sobic009G057300 Sobic003G029800--Sobic009G057300 Sobic003G428400 Sobic003G428400 Sobic003G029800--Sobic003G428400 Sobic004G188800 Sobic004G188800 Sobic003G029800--Sobic004G188800 Sobic007G103666--Sobic003G029800 Sobic001G301700 Sobic001G301700 Sobic007G103666--Sobic001G301700 Sobic001G375600 Sobic001G375600 Sobic007G103666--Sobic001G375600 Sobic001G438600 Sobic001G438600 Sobic007G103666--Sobic001G438600 Sobic001G207400 Sobic001G207400 Sobic007G103666--Sobic001G207400 Sobic002G430000 Sobic002G430000 Sobic007G103666--Sobic002G430000 Sobic001G015500 Sobic001G015500 Sobic007G103666--Sobic001G015500 Sobic006G040500 Sobic006G040500 Sobic007G103666--Sobic006G040500 Sobic007G103666--Sobic009G057300 Sobic007G216201 Sobic007G216201 Sobic001G520400--Sobic007G216201 Sobic001G520400--Sobic003G029800 Sobic001G520400--Sobic004G087500 Sobic002G324000 Sobic002G324000 Sobic001G520400--Sobic002G324000 Sobic001G520400--Sobic004G060900 Sobic002G190500 Sobic002G190500 Sobic001G520400--Sobic002G190500 Sobic003G184900 Sobic003G184900 Sobic001G520400--Sobic003G184900 Sobic008G079300 Sobic008G079300 Sobic001G520400--Sobic008G079300 Sobic008G182700 Sobic008G182700 Sobic001G520400--Sobic008G182700 Sobic003G407300 Sobic003G407300 Sobic009G229800--Sobic003G407300 Sobic001G156100 Sobic001G156100 Sobic009G229800--Sobic001G156100 Sobic009G229800--Sobic004G060900 Sobic001G373200 Sobic001G373200 Sobic009G229800--Sobic001G373200 Sobic009G121100 Sobic009G121100 Sobic009G229800--Sobic009G121100 Sobic001G443900 Sobic001G443900 Sobic009G229800--Sobic001G443900 Sobic002G419800 Sobic002G419800 Sobic009G229800--Sobic002G419800 Sobic009G229800--Sobic009G057300 Sobic007G172400 Sobic007G172400 Sobic009G229800--Sobic007G172400 Sobic001G474500 Sobic001G474500 Sobic004G060900--Sobic001G474500 Sobic004G321800 Sobic004G321800 Sobic004G060900--Sobic004G321800 Sobic007G068100 Sobic007G068100 Sobic004G060900--Sobic007G068100 Sobic003G148800 Sobic003G148800 Sobic004G060900--Sobic003G148800 Sobic001G325200 Sobic001G325200 Sobic004G060900--Sobic001G325200 Sobic004G060900--Sobic002G324000 Sobic004G060900--Sobic009G229800 Sobic004G060900--Sobic003G428400 Sobic004G060900--Sobic009G057300 Sobic004G087500--Sobic001G520400 Sobic004G087500--Sobic003G029800 Sobic004G087500--Sobic007G216201 Sobic002G223401 Sobic002G223401 Sobic004G087500--Sobic002G223401 Sobic004G087500--Sobic004G060900 Sobic004G087500--Sobic007G103666 Sobic002G403500 Sobic002G403500 Sobic004G087500--Sobic002G403500 Sobic003G158300 Sobic003G158300 Sobic004G087500--Sobic003G158300 Sobic010G205500 Sobic010G205500 Sobic004G087500--Sobic010G205500 Sobic005G024700--Sobic001G373200 Sobic005G024700--Sobic001G156100 Sobic001G474700 Sobic001G474700 Sobic005G024700--Sobic001G474700 Sobic004G295800 Sobic004G295800 Sobic005G024700--Sobic004G295800 Sobic005G024700--Sobic009G229800 Sobic005G024700--Sobic003G029800 Sobic008G191100 Sobic008G191100 Sobic005G024700--Sobic008G191100 Sobic004G242500 Sobic004G242500 Sobic005G024700--Sobic004G242500 Sobic002G122800 Sobic002G122800 Sobic005G024700--Sobic002G122800 Sobic003G061800 Sobic003G061800 Sobic009G057300--Sobic003G061800 Sobic009G057300--Sobic001G474500 Sobic009G057300--Sobic007G068100 Sobic009G057300--Sobic001G325200 Sobic003G388251 Sobic003G388251 Sobic009G057300--Sobic003G388251 Sobic003G329400 Sobic003G329400 Sobic009G057300--Sobic003G329400 Sobic003G354400 Sobic003G354400 Sobic009G057300--Sobic003G354400 Sobic001G334600 Sobic001G334600 Sobic009G057300--Sobic001G334600 Sobic001G322700 Sobic001G322700 Sobic009G057300--Sobic001G322700 Sobic003G428400--Sobic007G068100 Sobic003G428400--Sobic001G474500 Sobic003G428400--Sobic001G325200 Sobic003G428400--Sobic001G015500 Sobic010G205200 Sobic010G205200 Sobic003G428400--Sobic010G205200 Sobic001G069900 Sobic001G069900 Sobic003G428400--Sobic001G069900 Sobic003G428400--Sobic009G057300 Sobic003G428400--Sobic001G438600 Sobic010G112300 Sobic010G112300 Sobic003G428400--Sobic010G112300 Sobic003G338300 Sobic003G338300 Sobic004G188800--Sobic003G338300 Sobic004G188800--Sobic003G029800 Sobic003G235400 Sobic003G235400 Sobic004G188800--Sobic003G235400 Sobic001G280000 Sobic001G280000 Sobic004G188800--Sobic001G280000 Sobic001G227800 Sobic001G227800 Sobic004G188800--Sobic001G227800 Sobic002G215700 Sobic002G215700 Sobic004G188800--Sobic002G215700 Sobic004G188800--Sobic003G148800 Sobic002G058500 Sobic002G058500 Sobic004G188800--Sobic002G058500 Sobic004G101900 Sobic004G101900 Sobic004G188800--Sobic004G101900
Octagon: transcription factors


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