Gene annotation
Transcriptome id Sobic.004G087500.1
Synonym ATNTT1, Sb04g007240, NTT1
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
plastidic ATP/ADP-transporter, putative, expressed
UniProt A0A194YNF4
Pfam PF03219
Panther DB PTHR31187 PTHR31187:SF3
NCBI CDD -
KEGG Orthology K03301; ATP:ADP antiporter, AAA family
Gene Ontology GO:0016021; integral component of membrane GO:0006810transport GO:0005524ATP binding GO:0005471ATP:ADP antiporter activity


Orthologs (automatic annotation)
TAIR AT1G80300 : nucleotide transporter 1
RAP-DB (Rice) LOC_Os02g11740.1 : plastidic ATP/ADP-transporter, putative, expressed
MaizeGDB (Corn) Zm00025a020233 , Zm00025a028252 , Zm00025a038681
Brachypodium KQJ93974 , KQK08965
Barley HORVU3Hr1G058170.4 , HORVU6Hr1G036830.1 , HORVU6Hr1G036830.2 , HORVU3Hr1G058170.1 , HORVU3Hr1G058170.2 , HORVU3Hr1G058170.3
Wheat TraesCS3A02G233300 , TraesCS6B02G206800 , TraesCS3D02G219900 , TraesCS6D02G166400 , TraesCS6A02G178000
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.004G087500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G520400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@RING-H2 finger protein ATL2A, putative, expressed -
2 Sobic.003G029800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@RNA-dependent RNA polymerase, putative, expressed K11699: RDR, RNA-dependent RNA polymerase
3 Sobic.007G216201 - -
4 Sobic.002G223401 - -
5 Sobic.004G060900 STRUBBELIG-RECEPTOR FAMILY 3 precursor, putative, expressed -
6 Sobic.007G103666 - -
7 Sobic.002G403500 tetratricopeptide-like helical, putative, expressed -
8 Sobic.003G158300 3-hydroxyacyl-CoA dehydrogenase, putative, expressed K10527: enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase
9 Sobic.010G205500 inorganic H+ pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
10 Sobic.001G474500 mitochondrial carrier protein, putative, expressed -
11 Sobic.003G428400 beta-galactosidase, putative, expressed K01190: beta-galactosidase
12 Sobic.003G120800 expressed protein -
13 Sobic.001G069900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CBS domain containing membrane protein, putative, expressed K00088: IMPDH, IMP dehydrogenase
14 Sobic.004G123400 MYB family transcription factor, putative, expressed K09420: MYB, transcriptional activator Myb
15 Sobic.001G015500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@inner membrane protein, putative, expressed K03217: yidC, spoIIIJ, OXA1, YidC/Oxa1 family membrane protein insertase
16 Sobic.001G438600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@dihydrodipicolinate reductase, putative, expressed K00215: 4-hydroxy-tetrahydrodipicolinate reductase
17 Sobic.004G188800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@expressed protein -
18 Sobic.007G077900 zinc finger domain, LSD1 subclass family protein, expressed -
19 Sobic.001G176600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@cytochrome P450, putative, expressed -
20 Sobic.008G182700 thaumatin, putative, expressed -


Gene co-expression network
sample Sobic004G087500 Sobic004G087500 Sobic001G520400 Sobic001G520400 Sobic004G087500--Sobic001G520400 Sobic003G029800 Sobic003G029800 Sobic004G087500--Sobic003G029800 Sobic007G216201 Sobic007G216201 Sobic004G087500--Sobic007G216201 Sobic002G223401 Sobic002G223401 Sobic004G087500--Sobic002G223401 Sobic004G060900 Sobic004G060900 Sobic004G087500--Sobic004G060900 Sobic007G103666 Sobic007G103666 Sobic004G087500--Sobic007G103666 Sobic002G403500 Sobic002G403500 Sobic004G087500--Sobic002G403500 Sobic003G158300 Sobic003G158300 Sobic004G087500--Sobic003G158300 Sobic010G205500 Sobic010G205500 Sobic004G087500--Sobic010G205500 Sobic001G520400--Sobic007G216201 Sobic001G520400--Sobic003G029800 Sobic001G520400--Sobic004G087500 Sobic002G324000 Sobic002G324000 Sobic001G520400--Sobic002G324000 Sobic001G520400--Sobic004G060900 Sobic002G190500 Sobic002G190500 Sobic001G520400--Sobic002G190500 Sobic003G184900 Sobic003G184900 Sobic001G520400--Sobic003G184900 Sobic008G079300 Sobic008G079300 Sobic001G520400--Sobic008G079300 Sobic008G182700 Sobic008G182700 Sobic001G520400--Sobic008G182700 Sobic003G029800--Sobic007G103666 Sobic003G029800--Sobic001G520400 Sobic009G229800 Sobic009G229800 Sobic003G029800--Sobic009G229800 Sobic003G029800--Sobic004G060900 Sobic003G029800--Sobic004G087500 Sobic005G024700 Sobic005G024700 Sobic003G029800--Sobic005G024700 Sobic009G057300 Sobic009G057300 Sobic003G029800--Sobic009G057300 Sobic003G428400 Sobic003G428400 Sobic003G029800--Sobic003G428400 Sobic004G188800 Sobic004G188800 Sobic003G029800--Sobic004G188800 Sobic007G216201--Sobic001G520400 Sobic007G216201--Sobic002G190500 Sobic007G216201--Sobic002G324000 Sobic004G050200 Sobic004G050200 Sobic007G216201--Sobic004G050200 Sobic004G113300 Sobic004G113300 Sobic007G216201--Sobic004G113300 Sobic004G345800 Sobic004G345800 Sobic007G216201--Sobic004G345800 Sobic007G216201--Sobic003G184900 Sobic007G216201--Sobic008G079300 Sobic007G216201--Sobic004G060900 Sobic006G231800 Sobic006G231800 Sobic002G223401--Sobic006G231800 Sobic003G221600 Sobic003G221600 Sobic002G223401--Sobic003G221600 Sobic005G059200 Sobic005G059200 Sobic002G223401--Sobic005G059200 Sobic009G145101 Sobic009G145101 Sobic002G223401--Sobic009G145101 Sobic009G101200 Sobic009G101200 Sobic002G223401--Sobic009G101200 Sobic010G003400 Sobic010G003400 Sobic002G223401--Sobic010G003400 Sobic007G220300 Sobic007G220300 Sobic002G223401--Sobic007G220300 Sobic006G185200 Sobic006G185200 Sobic002G223401--Sobic006G185200 Sobic001G081000 Sobic001G081000 Sobic002G223401--Sobic001G081000 Sobic001G474500 Sobic001G474500 Sobic004G060900--Sobic001G474500 Sobic004G321800 Sobic004G321800 Sobic004G060900--Sobic004G321800 Sobic007G068100 Sobic007G068100 Sobic004G060900--Sobic007G068100 Sobic003G148800 Sobic003G148800 Sobic004G060900--Sobic003G148800 Sobic001G325200 Sobic001G325200 Sobic004G060900--Sobic001G325200 Sobic004G060900--Sobic002G324000 Sobic004G060900--Sobic009G229800 Sobic004G060900--Sobic003G428400 Sobic004G060900--Sobic009G057300 Sobic007G103666--Sobic003G029800 Sobic001G301700 Sobic001G301700 Sobic007G103666--Sobic001G301700 Sobic001G375600 Sobic001G375600 Sobic007G103666--Sobic001G375600 Sobic001G438600 Sobic001G438600 Sobic007G103666--Sobic001G438600 Sobic001G207400 Sobic001G207400 Sobic007G103666--Sobic001G207400 Sobic002G430000 Sobic002G430000 Sobic007G103666--Sobic002G430000 Sobic001G015500 Sobic001G015500 Sobic007G103666--Sobic001G015500 Sobic006G040500 Sobic006G040500 Sobic007G103666--Sobic006G040500 Sobic007G103666--Sobic009G057300 Sobic001G248300 Sobic001G248300 Sobic002G403500--Sobic001G248300 Sobic002G403500--Sobic004G060900 Sobic003G100800 Sobic003G100800 Sobic002G403500--Sobic003G100800 Sobic002G403500--Sobic001G474500 Sobic002G403500--Sobic001G438600 Sobic001G178700 Sobic001G178700 Sobic002G403500--Sobic001G178700 Sobic002G403500--Sobic009G229800 Sobic002G169900 Sobic002G169900 Sobic002G403500--Sobic002G169900 Sobic004G355000 Sobic004G355000 Sobic002G403500--Sobic004G355000 Sobic002G409800 Sobic002G409800 Sobic003G158300--Sobic002G409800 Sobic002G189400 Sobic002G189400 Sobic003G158300--Sobic002G189400 Sobic001G414900 Sobic001G414900 Sobic003G158300--Sobic001G414900 Sobic004G127700 Sobic004G127700 Sobic003G158300--Sobic004G127700 Sobic002G392700 Sobic002G392700 Sobic003G158300--Sobic002G392700 Sobic003G158300--Sobic010G205500 Sobic001G233700 Sobic001G233700 Sobic003G158300--Sobic001G233700 Sobic010G112300 Sobic010G112300 Sobic003G158300--Sobic010G112300 Sobic002G409900 Sobic002G409900 Sobic003G158300--Sobic002G409900 Sobic010G205500--Sobic001G474500 Sobic010G205500--Sobic007G068100 Sobic004G266400 Sobic004G266400 Sobic010G205500--Sobic004G266400 Sobic003G388251 Sobic003G388251 Sobic010G205500--Sobic003G388251 Sobic001G176600 Sobic001G176600 Sobic010G205500--Sobic001G176600 Sobic001G111150 Sobic001G111150 Sobic010G205500--Sobic001G111150 Sobic010G205500--Sobic003G100800 Sobic010G251200 Sobic010G251200 Sobic010G205500--Sobic010G251200 Sobic009G034700 Sobic009G034700 Sobic010G205500--Sobic009G034700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.