Gene annotation
Transcriptome id Sobic.001G520400.1
Synonym Sb01g048530, ATL8
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
RING-H2 finger protein ATL2A, putative, expressed
UniProt C5WZY4
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF187
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT1G76410 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os02g58540.1 : RING-H2 finger protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium PNT64191
Barley HORVU4Hr1G082740.1
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G216201 - -
2 Sobic.003G029800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@RNA-dependent RNA polymerase, putative, expressed K11699: RDR, RNA-dependent RNA polymerase
3 Sobic.004G087500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plastidic ATP/ADP-transporter, putative, expressed K03301: ATP:ADP antiporter, AAA family
4 Sobic.002G324000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@isocitrate lyase, putative, expressed K01637: E4.1.3.1, isocitrate lyase
5 Sobic.004G060900 STRUBBELIG-RECEPTOR FAMILY 3 precursor, putative, expressed -
6 Sobic.002G190500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@alpha-amylase precursor, putative, expressed K01176: AMY, amyA, alpha-amylase
7 Sobic.003G184900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@esterase, putative, expressed -
8 Sobic.008G079300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
9 Sobic.008G182700 thaumatin, putative, expressed -
10 Sobic.004G113300 cyclic nucleotide-gated ion channel 1, putative, expressed K05391: cyclic nucleotide gated channel, plant
11 Sobic.004G320600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glycosyltransferase, putative, expressed -
12 Sobic.004G321800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@saccharopine dehydrogenase, putative, expressed K14157: alpha-aminoadipic semialdehyde synthase
13 Sobic.003G105800 No apical meristem protein, putative, expressed -
14 Sobic.005G130400 terpene synthase, putative, expressed K15803: (-)-germacrene D synthase
15 Sobic.001G069900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CBS domain containing membrane protein, putative, expressed K00088: IMPDH, IMP dehydrogenase
16 Sobic.003G428400 beta-galactosidase, putative, expressed K01190: beta-galactosidase
17 Sobic.006G181300 Polyphenol oxidas(PubMedID : 28818380)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@polyphenol oxidase, putative, expressed K00422: polyphenol oxidase
18 Sobic.004G345800 Peroxisomal 3-ketoacyl-CoA thiolase 3 PKT3 (At)(PubMedID : 27208977)@3-ketoacyl-CoA thiolase, peroxisomal precursor, putative, expressed K07513: acetyl-CoA acyltransferase 1
19 Sobic.001G474500 mitochondrial carrier protein, putative, expressed -
20 Sobic.009G207600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@dnaJ domain containing protein, expressed -


Gene co-expression network
sample Sobic001G520400 Sobic001G520400 Sobic007G216201 Sobic007G216201 Sobic001G520400--Sobic007G216201 Sobic003G029800 Sobic003G029800 Sobic001G520400--Sobic003G029800 Sobic004G087500 Sobic004G087500 Sobic001G520400--Sobic004G087500 Sobic002G324000 Sobic002G324000 Sobic001G520400--Sobic002G324000 Sobic004G060900 Sobic004G060900 Sobic001G520400--Sobic004G060900 Sobic002G190500 Sobic002G190500 Sobic001G520400--Sobic002G190500 Sobic003G184900 Sobic003G184900 Sobic001G520400--Sobic003G184900 Sobic008G079300 Sobic008G079300 Sobic001G520400--Sobic008G079300 Sobic008G182700 Sobic008G182700 Sobic001G520400--Sobic008G182700 Sobic007G216201--Sobic001G520400 Sobic007G216201--Sobic002G190500 Sobic007G216201--Sobic002G324000 Sobic004G050200 Sobic004G050200 Sobic007G216201--Sobic004G050200 Sobic004G113300 Sobic004G113300 Sobic007G216201--Sobic004G113300 Sobic004G345800 Sobic004G345800 Sobic007G216201--Sobic004G345800 Sobic007G216201--Sobic003G184900 Sobic007G216201--Sobic008G079300 Sobic007G216201--Sobic004G060900 Sobic007G103666 Sobic007G103666 Sobic003G029800--Sobic007G103666 Sobic003G029800--Sobic001G520400 Sobic009G229800 Sobic009G229800 Sobic003G029800--Sobic009G229800 Sobic003G029800--Sobic004G060900 Sobic003G029800--Sobic004G087500 Sobic005G024700 Sobic005G024700 Sobic003G029800--Sobic005G024700 Sobic009G057300 Sobic009G057300 Sobic003G029800--Sobic009G057300 Sobic003G428400 Sobic003G428400 Sobic003G029800--Sobic003G428400 Sobic004G188800 Sobic004G188800 Sobic003G029800--Sobic004G188800 Sobic004G087500--Sobic001G520400 Sobic004G087500--Sobic003G029800 Sobic004G087500--Sobic007G216201 Sobic002G223401 Sobic002G223401 Sobic004G087500--Sobic002G223401 Sobic004G087500--Sobic004G060900 Sobic004G087500--Sobic007G103666 Sobic002G403500 Sobic002G403500 Sobic004G087500--Sobic002G403500 Sobic003G158300 Sobic003G158300 Sobic004G087500--Sobic003G158300 Sobic010G205500 Sobic010G205500 Sobic004G087500--Sobic010G205500 Sobic002G324000--Sobic002G190500 Sobic002G324000--Sobic004G113300 Sobic002G324000--Sobic003G184900 Sobic005G130400 Sobic005G130400 Sobic002G324000--Sobic005G130400 Sobic004G321800 Sobic004G321800 Sobic002G324000--Sobic004G321800 Sobic002G324000--Sobic004G050200 Sobic001G274800 Sobic001G274800 Sobic002G324000--Sobic001G274800 Sobic002G324000--Sobic008G182700 Sobic002G324000--Sobic004G060900 Sobic001G474500 Sobic001G474500 Sobic004G060900--Sobic001G474500 Sobic004G060900--Sobic004G321800 Sobic007G068100 Sobic007G068100 Sobic004G060900--Sobic007G068100 Sobic003G148800 Sobic003G148800 Sobic004G060900--Sobic003G148800 Sobic001G325200 Sobic001G325200 Sobic004G060900--Sobic001G325200 Sobic004G060900--Sobic002G324000 Sobic004G060900--Sobic009G229800 Sobic004G060900--Sobic003G428400 Sobic004G060900--Sobic009G057300 Sobic002G190500--Sobic002G324000 Sobic002G190500--Sobic004G113300 Sobic002G190500--Sobic005G130400 Sobic002G190500--Sobic004G050200 Sobic002G190500--Sobic003G184900 Sobic002G190500--Sobic004G345800 Sobic002G190500--Sobic004G321800 Sobic002G190500--Sobic007G216201 Sobic002G190500--Sobic008G079300 Sobic003G105800 Sobic003G105800 Sobic003G184900--Sobic003G105800 Sobic003G184900--Sobic008G079300 Sobic003G184900--Sobic004G321800 Sobic006G100332 Sobic006G100332 Sobic003G184900--Sobic006G100332 Sobic007G225900 Sobic007G225900 Sobic003G184900--Sobic007G225900 Sobic003G184900--Sobic002G324000 Sobic003G087200 Sobic003G087200 Sobic003G184900--Sobic003G087200 Sobic005G178100 Sobic005G178100 Sobic003G184900--Sobic005G178100 Sobic001G182500 Sobic001G182500 Sobic003G184900--Sobic001G182500 Sobic008G079300--Sobic003G184900 Sobic008G079300--Sobic003G105800 Sobic008G079300--Sobic007G225900 Sobic008G079300--Sobic004G321800 Sobic009G207600 Sobic009G207600 Sobic008G079300--Sobic009G207600 Sobic008G079300--Sobic005G178100 Sobic009G034700 Sobic009G034700 Sobic008G079300--Sobic009G034700 Sobic008G079300--Sobic001G474500 Sobic008G079300--Sobic001G325200 Sobic008G182700--Sobic002G324000 Sobic008G182700--Sobic003G184900 Sobic009G226600 Sobic009G226600 Sobic008G182700--Sobic009G226600 Sobic008G182700--Sobic008G079300 Sobic005G169400 Sobic005G169400 Sobic008G182700--Sobic005G169400 Sobic008G182700--Sobic002G190500 Sobic008G182700--Sobic009G207600 Sobic004G063400 Sobic004G063400 Sobic008G182700--Sobic004G063400 Sobic002G087800 Sobic002G087800 Sobic008G182700--Sobic002G087800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.