Gene annotation
Transcriptome id Sobic.005G130400.3,Sobic.005G130400.5,Sobic.005G130400.1,Sobic.005G130400.8,Sobic.005G130400.7,Sobic.005G130400.4,Sobic.005G130400.2,Sobic.005G130400.6
Synonym Sb05g019210
Functional annotation terpene synthase, putative, expressed
UniProt A0A1B6PS61 , A0A1Z5RIG2 , A0A1B6PS77 , A0A1Z5RJJ7 , A0A1Z5RIC9 , A0A1Z5RIE0 , A0A1Z5RJA5 , A0A1B6PS63
Pfam PF03936 PF01397 PF01397 PF01397 PF03936
Panther DB PTHR31225 PTHR31225:SF20 PTHR31225:SF20 PTHR31225
NCBI CDD -
KEGG Orthology K15803; (-)-germacrene D synthase
Gene Ontology GO:0008152; metabolic process GO:0000287magnesium ion binding GO:0010333terpene synthase activity GO:0016829lyase activity GO:0016829lyase activity GO:0010333terpene synthase activity GO:0000287magnesium ion binding GO:0008152metabolic process GO:0016829lyase activity GO:0010333terpene synthase activity GO:0008152metabolic process GO:0008152metabolic process GO:0010333terpene synthase activity GO:0016829lyase activity GO:0016829lyase activity GO:0010333terpene synthase activity GO:0008152metabolic process GO:0000287magnesium ion binding


Orthologs (automatic annotation)
TAIR AT1G70080 : terpene synthase 21,Terpenoid cyclases/Protein prenyltransferases superfamily protein
RAP-DB (Rice) LOC_Os03g24640.1,LOC_Os03g24690.1 : terpene synthase, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G324000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@isocitrate lyase, putative, expressed K01637: E4.1.3.1, isocitrate lyase
2 Sobic.002G190500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@alpha-amylase precursor, putative, expressed K01176: AMY, amyA, alpha-amylase
3 Sobic.004G113300 cyclic nucleotide-gated ion channel 1, putative, expressed K05391: cyclic nucleotide gated channel, plant
4 Sobic.004G050200 Strongly up-regulated in leaf samples inoculated with S. reilianum f. sp. zeae but not S. reilianum f. sp. reilianum(PubMedID : 22670753)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@function as typical DFRs by accepting dihydroflavonol substrates(PubMedID : 20529887)@dihydroflavonol-4-reductase, putative, expressed K13082: bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase
5 Sobic.002G217133 - K12662: PRPF4, U4/U6 small nuclear ribonucleoprotein PRP4
6 Sobic.002G217133 - K12662: PRPF4, U4/U6 small nuclear ribonucleoprotein PRP4
7 Sobic.002G217133 - K12662: PRPF4, U4/U6 small nuclear ribonucleoprotein PRP4
8 Sobic.006G036900 vignain precursor, putative, expressed -
9 Sobic.008G028800 WRKY104, expressed -
10 Sobic.008G182700 thaumatin, putative, expressed -
11 Sobic.004G060900 STRUBBELIG-RECEPTOR FAMILY 3 precursor, putative, expressed -
12 Sobic.003G184900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@esterase, putative, expressed -
13 Sobic.008G060700 receptor-like protein kinase 5 precursor, putative, expressed -
14 Sobic.001G182500 GDSL-like lipase/acylhydrolase, putative, expressed -
15 Sobic.007G216201 - -
16 Sobic.001G274800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@oxidoreductase, aldo/keto reductase family protein, putative, expressed -
17 Sobic.006G127100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@malate synthase, glyoxysomal, putative, expressed K01638: aceB, malate synthase
18 Sobic.008G079300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
19 Sobic.004G345800 Peroxisomal 3-ketoacyl-CoA thiolase 3 PKT3 (At)(PubMedID : 27208977)@3-ketoacyl-CoA thiolase, peroxisomal precursor, putative, expressed K07513: acetyl-CoA acyltransferase 1
20 Sobic.004G321800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@saccharopine dehydrogenase, putative, expressed K14157: alpha-aminoadipic semialdehyde synthase


Gene co-expression network
sample Sobic005G130400 Sobic005G130400 Sobic002G324000 Sobic002G324000 Sobic005G130400--Sobic002G324000 Sobic002G190500 Sobic002G190500 Sobic005G130400--Sobic002G190500 Sobic004G113300 Sobic004G113300 Sobic005G130400--Sobic004G113300 Sobic004G050200 Sobic004G050200 Sobic005G130400--Sobic004G050200 Sobic002G217133 Sobic002G217133 Sobic005G130400--Sobic002G217133 Sobic006G036900 Sobic006G036900 Sobic005G130400--Sobic006G036900 Sobic008G028800 Sobic008G028800 Sobic005G130400--Sobic008G028800 Sobic002G324000--Sobic002G190500 Sobic002G324000--Sobic004G113300 Sobic003G184900 Sobic003G184900 Sobic002G324000--Sobic003G184900 Sobic002G324000--Sobic005G130400 Sobic004G321800 Sobic004G321800 Sobic002G324000--Sobic004G321800 Sobic002G324000--Sobic004G050200 Sobic001G274800 Sobic001G274800 Sobic002G324000--Sobic001G274800 Sobic008G182700 Sobic008G182700 Sobic002G324000--Sobic008G182700 Sobic004G060900 Sobic004G060900 Sobic002G324000--Sobic004G060900 Sobic002G190500--Sobic002G324000 Sobic002G190500--Sobic004G113300 Sobic002G190500--Sobic005G130400 Sobic002G190500--Sobic004G050200 Sobic002G190500--Sobic003G184900 Sobic004G345800 Sobic004G345800 Sobic002G190500--Sobic004G345800 Sobic002G190500--Sobic004G321800 Sobic007G216201 Sobic007G216201 Sobic002G190500--Sobic007G216201 Sobic008G079300 Sobic008G079300 Sobic002G190500--Sobic008G079300 Sobic004G113300--Sobic002G324000 Sobic004G113300--Sobic002G190500 Sobic004G113300--Sobic004G050200 Sobic004G113300--Sobic003G184900 Sobic004G113300--Sobic008G079300 Sobic004G113300--Sobic005G130400 Sobic004G113300--Sobic001G274800 Sobic003G105800 Sobic003G105800 Sobic004G113300--Sobic003G105800 Sobic004G113300--Sobic004G060900 Sobic004G050200--Sobic004G113300 Sobic001G182500 Sobic001G182500 Sobic004G050200--Sobic001G182500 Sobic004G050200--Sobic003G184900 Sobic004G050200--Sobic006G036900 Sobic004G050200--Sobic002G324000 Sobic004G050200--Sobic002G190500 Sobic001G491800 Sobic001G491800 Sobic004G050200--Sobic001G491800 Sobic004G050200--Sobic001G274800 Sobic004G050200--Sobic008G079300 Sobic002G217133--Sobic002G217133 Sobic002G217133--Sobic005G130400 Sobic002G217133--Sobic006G036900 Sobic010G024700 Sobic010G024700 Sobic002G217133--Sobic010G024700 Sobic002G217133--Sobic004G113300 Sobic002G217133--Sobic002G190500 Sobic005G196200 Sobic005G196200 Sobic002G217133--Sobic005G196200 Sobic002G217133--Sobic004G050200 Sobic006G036900--Sobic004G050200 Sobic004G230600 Sobic004G230600 Sobic006G036900--Sobic004G230600 Sobic006G036900--Sobic004G113300 Sobic006G036900--Sobic002G190500 Sobic006G036900--Sobic001G182500 Sobic006G036900--Sobic002G217133 Sobic006G036900--Sobic005G130400 Sobic008G053900 Sobic008G053900 Sobic008G028800--Sobic008G053900 Sobic008G028800--Sobic005G130400 Sobic002G084600 Sobic002G084600 Sobic008G028800--Sobic002G084600 Sobic010G135900 Sobic010G135900 Sobic008G028800--Sobic010G135900 Sobic008G028800--Sobic002G190500 Sobic009G058200 Sobic009G058200 Sobic008G028800--Sobic009G058200 Sobic008G028800--Sobic006G036900 Sobic007G163901 Sobic007G163901 Sobic008G028800--Sobic007G163901 Sobic006G241100 Sobic006G241100 Sobic008G028800--Sobic006G241100
Octagon: transcription factors


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