Gene annotation
| Transcriptome id | Sobic.002G217133.1 |
|---|---|
| Synonym | - |
| Functional annotation | - |
| UniProt | A0A1W0W5B0 |
| Pfam | - |
| Panther DB | PTHR19846 |
| NCBI CDD | - |
| KEGG Orthology | K12662; PRPF4, U4/U6 small nuclear ribonucleoprotein PRP4 |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT2G41500 : WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related |
|---|---|
| RAP-DB (Rice) | LOC_Os03g23935.1 : WD domain, G-beta repeat domain containing protein, expressed |
| MaizeGDB (Corn) | Zm00025a002490 |
| Brachypodium | - |
| Barley | HORVU4Hr1G034750.1 |
| Wheat | TraesCS2D02G182600 , TraesCS2A02G175200 , TraesCS4D02G160600 , TraesCS4A02G149100 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.002G217133 | - | K12662: PRPF4, U4/U6 small nuclear ribonucleoprotein PRP4 |
| 2 | Sobic.002G217133 | - | K12662: PRPF4, U4/U6 small nuclear ribonucleoprotein PRP4 |
| 3 | Sobic.005G130400 | terpene synthase, putative, expressed | K15803: (-)-germacrene D synthase |
| 4 | Sobic.006G036900 | vignain precursor, putative, expressed | - |
| 5 | Sobic.010G024700 | expressed protein | - |
| 6 | Sobic.004G113300 | cyclic nucleotide-gated ion channel 1, putative, expressed | K05391: cyclic nucleotide gated channel, plant |
| 7 | Sobic.002G190500 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@alpha-amylase precursor, putative, expressed | K01176: AMY, amyA, alpha-amylase |
| 8 | Sobic.005G196200 | transporter family protein, putative, expressed | - |
| 9 | Sobic.004G050200 | Strongly up-regulated in leaf samples inoculated with S. reilianum f. sp. zeae but not S. reilianum f. sp. reilianum(PubMedID : 22670753)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@function as typical DFRs by accepting dihydroflavonol substrates(PubMedID : 20529887)@dihydroflavonol-4-reductase, putative, expressed | K13082: bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase |
| 10 | Sobic.004G230600 | - | - |
| 11 | Sobic.002G324000 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@isocitrate lyase, putative, expressed | K01637: E4.1.3.1, isocitrate lyase |
| 12 | Sobic.008G028800 | WRKY104, expressed | - |
| 13 | Sobic.007G128800 | - | - |
| 14 | Sobic.007G216201 | - | - |
| 15 | Sobic.009G250200 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@transmembrane amino acid transporter protein, putative, expressed | - |
| 16 | Sobic.007G053900 | ulp1 protease family, C-terminal catalytic domain containing protein, expressed | - |
| 17 | Sobic.009G119200 | "beta-1,3-glucanase "(PubMedID : 25311645)@glycosyl hydrolases family 17, putative, expressed | - |
| 18 | Sobic.008G060700 | receptor-like protein kinase 5 precursor, putative, expressed | - |
| 19 | Sobic.002G328500 | TKL_IRAK_DUF26-lc.10 - DUF26 kinases have homology to DUF26 containing loci, expressed | - |
| 20 | Sobic.001G274800 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@oxidoreductase, aldo/keto reductase family protein, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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