Gene annotation
Transcriptome id Sobic.009G250200.1
Synonym Sb09g030080
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
transmembrane amino acid transporter protein, putative, expressed
UniProt C5YWL0
Pfam PF01490
Panther DB PTHR22950 PTHR22950:SF331
NCBI CDD KOG1303; Amino acid transporters
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G41800 : Transmembrane amino acid transporter family protein
RAP-DB (Rice) LOC_Os05g50920.1 : transmembrane amino acid transporter protein, putative, expressed
MaizeGDB (Corn) Zm00025a028385
Brachypodium KQK08775 , KQK08776 , KQK04635 , KQK08777 , PNT72405
Barley HORVU3Hr1G055450.5 , HORVU1Hr1G092980.12 , HORVU3Hr1G055450.16 , HORVU3Hr1G055450.14 , HORVU3Hr1G055450.15 , HORVU3Hr1G055450.12 , HORVU3Hr1G055450.13 , HORVU3Hr1G055450.10 , HORVU3Hr1G055450.11 , HORVU1Hr1G092960.7 , HORVU1Hr1G092960.6 , HORVU1Hr1G092960.5 , HORVU1Hr1G092960.4 , HORVU1Hr1G092960.3 , HORVU1Hr1G092960.2 , HORVU1Hr1G092960.1 , HORVU1Hr1G092960.8 , HORVU3Hr1G055450.8 , HORVU3Hr1G055450.9 , HORVU3Hr1G055450.4 , HORVU3Hr1G055450.6 , HORVU3Hr1G055450.7 , HORVU3Hr1G055450.1 , HORVU3Hr1G055450.2 , HORVU3Hr1G055450.3 , HORVU1Hr1G092980.8 , HORVU1Hr1G092980.1 , HORVU1Hr1G092980.2 , HORVU1Hr1G092980.5 , HORVU1Hr1G092980.4 , HORVU1Hr1G092980.6
Wheat TraesCS1D02G434300 , TraesCS1A02G425300 , TraesCS3B02G253600 , TraesCS1D02G434300 , TraesCS1A02G425400 , TraesCS3D02G229500 , TraesCS1B02G459700 , TraesCS1B02G459800 , TraesCS3A02G224100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G128800 - -
2 Sobic.005G024900 major facilitator superfamily antiporter, putative, expressed -
3 Sobic.002G324000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@isocitrate lyase, putative, expressed K01637: E4.1.3.1, isocitrate lyase
4 Sobic.002G190500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@alpha-amylase precursor, putative, expressed K01176: AMY, amyA, alpha-amylase
5 Sobic.003G241500 dehydrogenase, putative, expressed K00031: IDH1, IDH2, isocitrate dehydrogenase
6 Sobic.008G182700 thaumatin, putative, expressed -
7 Sobic.009G226600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@wax synthase, putative, expressed -
8 Sobic.006G244400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@nuclease PA3, putative, expressed -
9 Sobic.007G196300 ubiquitin-associated protein, putative, expressed -
10 Sobic.005G130400 terpene synthase, putative, expressed K15803: (-)-germacrene D synthase
11 Sobic.002G087800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@1-aminocyclopropane-1-carboxylate oxidase 2, putative, expressed -
12 Sobic.006G127100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@malate synthase, glyoxysomal, putative, expressed K01638: aceB, malate synthase
13 Sobic.004G113300 cyclic nucleotide-gated ion channel 1, putative, expressed K05391: cyclic nucleotide gated channel, plant
14 Sobic.006G174400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@cis-zeatin O-glucosyltransferase, putative, expressed K13495: cis-zeatin O-glucosyltransferase
15 Sobic.009G221200 NBS-LRR disease resistance protein, putative, expressed -
16 Sobic.003G440900 Invertase genes(PubMedID : 24456189)@"Beta-fructofuranosidase, cell wall Invertase 4 (Os)"(PubMedID : 27208977)@Sugar degradation(PubMedID : 27330561)@glycosyl hydrolases, putative, expressed K01193: INV, beta-fructofuranosidase
17 Sobic.001G132000 fumarylacetoacetase, putative, expressed K01557: acylpyruvate hydrolase
18 Sobic.003G184900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@esterase, putative, expressed -
19 Sobic.004G228400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@helix-loop-helix DNA-binding protein, putative, expressed -
20 Sobic.008G074400 glutathione S-transferase, putative, expressed K01800: maiA, maleylacetoacetate isomerase


Gene co-expression network
sample Sobic009G250200 Sobic009G250200 Sobic007G128800 Sobic007G128800 Sobic009G250200--Sobic007G128800 Sobic005G024900 Sobic005G024900 Sobic009G250200--Sobic005G024900 Sobic002G324000 Sobic002G324000 Sobic009G250200--Sobic002G324000 Sobic002G190500 Sobic002G190500 Sobic009G250200--Sobic002G190500 Sobic003G241500 Sobic003G241500 Sobic009G250200--Sobic003G241500 Sobic008G182700 Sobic008G182700 Sobic009G250200--Sobic008G182700 Sobic009G226600 Sobic009G226600 Sobic009G250200--Sobic009G226600 Sobic006G244400 Sobic006G244400 Sobic009G250200--Sobic006G244400 Sobic007G196300 Sobic007G196300 Sobic009G250200--Sobic007G196300 Sobic007G128800--Sobic009G250200 Sobic007G128800--Sobic008G182700 Sobic005G130400 Sobic005G130400 Sobic007G128800--Sobic005G130400 Sobic007G128800--Sobic002G324000 Sobic007G213925 Sobic007G213925 Sobic007G128800--Sobic007G213925 Sobic007G128800--Sobic002G190500 Sobic007G128800--Sobic009G226600 Sobic004G113300 Sobic004G113300 Sobic007G128800--Sobic004G113300 Sobic002G217133 Sobic002G217133 Sobic007G128800--Sobic002G217133 Sobic002G087800 Sobic002G087800 Sobic005G024900--Sobic002G087800 Sobic001G132000 Sobic001G132000 Sobic005G024900--Sobic001G132000 Sobic003G061400 Sobic003G061400 Sobic005G024900--Sobic003G061400 Sobic003G440900 Sobic003G440900 Sobic005G024900--Sobic003G440900 Sobic005G024900--Sobic003G241500 Sobic004G333200 Sobic004G333200 Sobic005G024900--Sobic004G333200 Sobic005G024900--Sobic006G244400 Sobic005G152200 Sobic005G152200 Sobic005G024900--Sobic005G152200 Sobic006G127100 Sobic006G127100 Sobic005G024900--Sobic006G127100 Sobic002G324000--Sobic002G190500 Sobic002G324000--Sobic004G113300 Sobic003G184900 Sobic003G184900 Sobic002G324000--Sobic003G184900 Sobic002G324000--Sobic005G130400 Sobic004G321800 Sobic004G321800 Sobic002G324000--Sobic004G321800 Sobic004G050200 Sobic004G050200 Sobic002G324000--Sobic004G050200 Sobic001G274800 Sobic001G274800 Sobic002G324000--Sobic001G274800 Sobic002G324000--Sobic008G182700 Sobic004G060900 Sobic004G060900 Sobic002G324000--Sobic004G060900 Sobic002G190500--Sobic002G324000 Sobic002G190500--Sobic004G113300 Sobic002G190500--Sobic005G130400 Sobic002G190500--Sobic004G050200 Sobic002G190500--Sobic003G184900 Sobic004G345800 Sobic004G345800 Sobic002G190500--Sobic004G345800 Sobic002G190500--Sobic004G321800 Sobic007G216201 Sobic007G216201 Sobic002G190500--Sobic007G216201 Sobic008G079300 Sobic008G079300 Sobic002G190500--Sobic008G079300 Sobic003G241500--Sobic002G087800 Sobic002G315800 Sobic002G315800 Sobic003G241500--Sobic002G315800 Sobic002G415900 Sobic002G415900 Sobic003G241500--Sobic002G415900 Sobic003G241500--Sobic005G024900 Sobic003G241500--Sobic004G345800 Sobic009G057300 Sobic009G057300 Sobic003G241500--Sobic009G057300 Sobic004G127700 Sobic004G127700 Sobic003G241500--Sobic004G127700 Sobic001G474500 Sobic001G474500 Sobic003G241500--Sobic001G474500 Sobic003G428400 Sobic003G428400 Sobic003G241500--Sobic003G428400 Sobic008G182700--Sobic002G324000 Sobic008G182700--Sobic003G184900 Sobic008G182700--Sobic009G226600 Sobic008G182700--Sobic008G079300 Sobic005G169400 Sobic005G169400 Sobic008G182700--Sobic005G169400 Sobic008G182700--Sobic002G190500 Sobic009G207600 Sobic009G207600 Sobic008G182700--Sobic009G207600 Sobic004G063400 Sobic004G063400 Sobic008G182700--Sobic004G063400 Sobic008G182700--Sobic002G087800 Sobic009G226600--Sobic008G079300 Sobic009G226600--Sobic002G087800 Sobic009G226600--Sobic009G207600 Sobic009G226600--Sobic001G474500 Sobic009G226600--Sobic008G182700 Sobic009G226600--Sobic003G184900 Sobic009G226600--Sobic002G324000 Sobic006G181300 Sobic006G181300 Sobic009G226600--Sobic006G181300 Sobic001G359500 Sobic001G359500 Sobic009G226600--Sobic001G359500 Sobic001G512800 Sobic001G512800 Sobic006G244400--Sobic001G512800 Sobic010G206000 Sobic010G206000 Sobic006G244400--Sobic010G206000 Sobic006G244400--Sobic005G024900 Sobic010G248900 Sobic010G248900 Sobic006G244400--Sobic010G248900 Sobic002G155400 Sobic002G155400 Sobic006G244400--Sobic002G155400 Sobic006G100332 Sobic006G100332 Sobic006G244400--Sobic006G100332 Sobic002G409500 Sobic002G409500 Sobic006G244400--Sobic002G409500 Sobic007G068100 Sobic007G068100 Sobic006G244400--Sobic007G068100 Sobic005G079900 Sobic005G079900 Sobic006G244400--Sobic005G079900 Sobic002G283900 Sobic002G283900 Sobic007G196300--Sobic002G283900 Sobic007G196300--Sobic005G024900 Sobic007G196300--Sobic003G440900 Sobic004G173600 Sobic004G173600 Sobic007G196300--Sobic004G173600 Sobic003G080900 Sobic003G080900 Sobic007G196300--Sobic003G080900 Sobic003G388300 Sobic003G388300 Sobic007G196300--Sobic003G388300 Sobic007G120000 Sobic007G120000 Sobic007G196300--Sobic007G120000 Sobic003G106300 Sobic003G106300 Sobic007G196300--Sobic003G106300 Sobic007G196300--Sobic005G152200
Octagon: transcription factors


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