Gene annotation
Transcriptome id Sobic.003G241500.3,Sobic.003G241500.4
Synonym cICDH, Sb03g029840
Functional annotation dehydrogenase, putative, expressed
UniProt A0A1W0VYP8 , A0A1W0VYR0
Pfam PF00180
Panther DB PTHR11822 PTHR11822:SF8
NCBI CDD -
KEGG Orthology K00031; IDH1, IDH2, isocitrate dehydrogenase
Gene Ontology GO:0016616; oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GO:0006102isocitrate metabolic process GO:0004450isocitrate dehydrogenase (NADP+) activity


Orthologs (automatic annotation)
TAIR AT1G65930 : cytosolic NADP+-dependent isocitrate dehydrogenase
RAP-DB (Rice) LOC_Os01g46610.1 : dehydrogenase, putative, expressed
MaizeGDB (Corn) Zm00025a038695 , Zm00025a044644 , Zm00025a028205
Brachypodium KQK09004 , PNT72521 , KQK03585 , KQK03584 , KQK03583 , KQK03582
Barley HORVU3Hr1G059060.11 , HORVU3Hr1G059060.10 , HORVU3Hr1G059060.12 , HORVU3Hr1G033920.24 , HORVU3Hr1G033920.23 , HORVU3Hr1G033920.22 , HORVU3Hr1G033920.21 , HORVU3Hr1G033920.20 , HORVU3Hr1G059060.1 , HORVU3Hr1G059060.3 , HORVU3Hr1G059060.2 , HORVU3Hr1G059060.5 , HORVU3Hr1G059060.4 , HORVU3Hr1G059060.7 , HORVU3Hr1G059060.6 , HORVU3Hr1G059060.9 , HORVU3Hr1G059060.8 , HORVU3Hr1G033920.16 , HORVU3Hr1G033920.17 , HORVU3Hr1G033920.14 , HORVU3Hr1G033920.15 , HORVU3Hr1G033920.12 , HORVU3Hr1G033920.13 , HORVU3Hr1G033920.10 , HORVU3Hr1G033920.11 , HORVU3Hr1G033920.18 , HORVU3Hr1G033920.19 , HORVU3Hr1G033920.4 , HORVU3Hr1G033920.5 , HORVU3Hr1G033920.6 , HORVU3Hr1G033920.7 , HORVU3Hr1G033920.1 , HORVU3Hr1G033920.2 , HORVU3Hr1G033920.3 , HORVU3Hr1G033920.8 , HORVU3Hr1G033920.9
Wheat TraesCS3B02G265700 , TraesCS3B02G199500 , TraesCS3D02G237500 , TraesCS3A02G237100 , TraesCS3A02G166600 , TraesCS3A02G166600
Populus PNT17149 , PNT17150 , PNT17151 , PNT17152


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cDNA sequences
Sobic.003G241500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G087800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@1-aminocyclopropane-1-carboxylate oxidase 2, putative, expressed -
2 Sobic.002G315800 Papain family cysteine protease domain containing protein, expressed K01363: cathepsin B
3 Sobic.002G415900 acyl-CoA dehydrogenase family member 10, putative, expressed K00249: ACADM, acyl-CoA dehydrogenase
4 Sobic.005G024900 major facilitator superfamily antiporter, putative, expressed -
5 Sobic.004G345800 Peroxisomal 3-ketoacyl-CoA thiolase 3 PKT3 (At)(PubMedID : 27208977)@3-ketoacyl-CoA thiolase, peroxisomal precursor, putative, expressed K07513: acetyl-CoA acyltransferase 1
6 Sobic.009G057300 acyl-coenzyme A dehydrogenase, mitochondrial precursor, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
7 Sobic.004G127700 alpha-1,2-fucosidase, putative, expressed K15923: AXY8, FUC95A, alpha-L-fucosidase 2
8 Sobic.001G474500 mitochondrial carrier protein, putative, expressed -
9 Sobic.003G428400 beta-galactosidase, putative, expressed K01190: beta-galactosidase
10 Sobic.006G157700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@glycosyl hydrolase family 3 protein, putative, expressed -
11 Sobic.010G205500 inorganic H+ pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
12 Sobic.007G068100 aconitate hydratase protein, putative, expressed K01681: ACO, aconitate hydratase
13 Sobic.003G061800 glutaryl-CoA dehydrogenase, mitochondrial precursor, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
14 Sobic.003G388251 - K01166: ribonuclease T2
15 Sobic.009G226600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@wax synthase, putative, expressed -
16 Sobic.004G113300 cyclic nucleotide-gated ion channel 1, putative, expressed K05391: cyclic nucleotide gated channel, plant
17 Sobic.001G111150 - K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
18 Sobic.002G324000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@isocitrate lyase, putative, expressed K01637: E4.1.3.1, isocitrate lyase
19 Sobic.007G128600 CC-NBS-LRR protein, putative, expressed -
20 Sobic.003G354400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@acyl-coenzyme A oxidase, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase


Gene co-expression network
sample Sobic003G241500 Sobic003G241500 Sobic002G087800 Sobic002G087800 Sobic003G241500--Sobic002G087800 Sobic002G315800 Sobic002G315800 Sobic003G241500--Sobic002G315800 Sobic002G415900 Sobic002G415900 Sobic003G241500--Sobic002G415900 Sobic005G024900 Sobic005G024900 Sobic003G241500--Sobic005G024900 Sobic004G345800 Sobic004G345800 Sobic003G241500--Sobic004G345800 Sobic009G057300 Sobic009G057300 Sobic003G241500--Sobic009G057300 Sobic004G127700 Sobic004G127700 Sobic003G241500--Sobic004G127700 Sobic001G474500 Sobic001G474500 Sobic003G241500--Sobic001G474500 Sobic003G428400 Sobic003G428400 Sobic003G241500--Sobic003G428400 Sobic002G087800--Sobic005G024900 Sobic002G087800--Sobic009G057300 Sobic003G388251 Sobic003G388251 Sobic002G087800--Sobic003G388251 Sobic009G226600 Sobic009G226600 Sobic002G087800--Sobic009G226600 Sobic002G087800--Sobic003G241500 Sobic002G087800--Sobic001G474500 Sobic003G061800 Sobic003G061800 Sobic002G087800--Sobic003G061800 Sobic001G305800 Sobic001G305800 Sobic002G087800--Sobic001G305800 Sobic005G178100 Sobic005G178100 Sobic002G087800--Sobic005G178100 Sobic009G034700 Sobic009G034700 Sobic002G315800--Sobic009G034700 Sobic002G315800--Sobic003G241500 Sobic004G131040 Sobic004G131040 Sobic002G315800--Sobic004G131040 Sobic001G111150 Sobic001G111150 Sobic002G315800--Sobic001G111150 Sobic007G068100 Sobic007G068100 Sobic002G315800--Sobic007G068100 Sobic002G315800--Sobic002G415900 Sobic004G124200 Sobic004G124200 Sobic002G315800--Sobic004G124200 Sobic002G315800--Sobic001G474500 Sobic002G315800--Sobic004G345800 Sobic002G415900--Sobic007G068100 Sobic002G415900--Sobic001G474500 Sobic002G415900--Sobic009G057300 Sobic002G415900--Sobic003G388251 Sobic002G415900--Sobic001G111150 Sobic001G322700 Sobic001G322700 Sobic002G415900--Sobic001G322700 Sobic003G200100 Sobic003G200100 Sobic002G415900--Sobic003G200100 Sobic003G226200 Sobic003G226200 Sobic002G415900--Sobic003G226200 Sobic002G415900--Sobic004G124200 Sobic005G024900--Sobic002G087800 Sobic001G132000 Sobic001G132000 Sobic005G024900--Sobic001G132000 Sobic003G061400 Sobic003G061400 Sobic005G024900--Sobic003G061400 Sobic003G440900 Sobic003G440900 Sobic005G024900--Sobic003G440900 Sobic005G024900--Sobic003G241500 Sobic004G333200 Sobic004G333200 Sobic005G024900--Sobic004G333200 Sobic006G244400 Sobic006G244400 Sobic005G024900--Sobic006G244400 Sobic005G152200 Sobic005G152200 Sobic005G024900--Sobic005G152200 Sobic006G127100 Sobic006G127100 Sobic005G024900--Sobic006G127100 Sobic004G345800--Sobic003G061800 Sobic004G345800--Sobic001G474500 Sobic003G184900 Sobic003G184900 Sobic004G345800--Sobic003G184900 Sobic004G345800--Sobic003G388251 Sobic008G079300 Sobic008G079300 Sobic004G345800--Sobic008G079300 Sobic004G345800--Sobic007G068100 Sobic004G345800--Sobic009G057300 Sobic004G345800--Sobic006G127100 Sobic004G321800 Sobic004G321800 Sobic004G345800--Sobic004G321800 Sobic009G057300--Sobic003G061800 Sobic009G057300--Sobic001G474500 Sobic009G057300--Sobic007G068100 Sobic001G325200 Sobic001G325200 Sobic009G057300--Sobic001G325200 Sobic009G057300--Sobic003G388251 Sobic003G329400 Sobic003G329400 Sobic009G057300--Sobic003G329400 Sobic003G354400 Sobic003G354400 Sobic009G057300--Sobic003G354400 Sobic001G334600 Sobic001G334600 Sobic009G057300--Sobic001G334600 Sobic009G057300--Sobic001G322700 Sobic003G233600 Sobic003G233600 Sobic004G127700--Sobic003G233600 Sobic009G094300 Sobic009G094300 Sobic004G127700--Sobic009G094300 Sobic002G308500 Sobic002G308500 Sobic004G127700--Sobic002G308500 Sobic004G339100 Sobic004G339100 Sobic004G127700--Sobic004G339100 Sobic001G120300 Sobic001G120300 Sobic004G127700--Sobic001G120300 Sobic004G127700--Sobic001G111150 Sobic009G139900 Sobic009G139900 Sobic004G127700--Sobic009G139900 Sobic004G127700--Sobic009G057300 Sobic004G136300 Sobic004G136300 Sobic004G127700--Sobic004G136300 Sobic001G474500--Sobic007G068100 Sobic001G474500--Sobic001G325200 Sobic001G474500--Sobic009G057300 Sobic004G060900 Sobic004G060900 Sobic001G474500--Sobic004G060900 Sobic001G474500--Sobic003G388251 Sobic001G474500--Sobic004G321800 Sobic001G474500--Sobic003G428400 Sobic001G130000 Sobic001G130000 Sobic001G474500--Sobic001G130000 Sobic001G474500--Sobic009G034700 Sobic003G428400--Sobic007G068100 Sobic003G428400--Sobic001G474500 Sobic003G428400--Sobic001G325200 Sobic001G015500 Sobic001G015500 Sobic003G428400--Sobic001G015500 Sobic010G205200 Sobic010G205200 Sobic003G428400--Sobic010G205200 Sobic001G069900 Sobic001G069900 Sobic003G428400--Sobic001G069900 Sobic003G428400--Sobic009G057300 Sobic001G438600 Sobic001G438600 Sobic003G428400--Sobic001G438600 Sobic010G112300 Sobic010G112300 Sobic003G428400--Sobic010G112300
Octagon: transcription factors


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