Gene annotation
Transcriptome id Sobic.006G157700.1
Synonym Sb06g023450
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)" (PubMedID : 27586543)
glycosyl hydrolase family 3 protein, putative, expressed
UniProt C5YCL4
Pfam PF14310 PF00933 PF01915
Panther DB PTHR30620 PTHR30620:SF19
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005975; carbohydrate metabolic process GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds


Orthologs (automatic annotation)
TAIR AT5G10560 : Glycosyl hydrolase family protein
RAP-DB (Rice) LOC_Os04g44840.1 : glycosyl hydrolase family 3 protein, putative, expressed
MaizeGDB (Corn) Zm00025a010456
Brachypodium KQJ83737
Barley HORVU2Hr1G091270.4 , HORVU2Hr1G091270.1 , HORVU2Hr1G091270.3 , HORVU2Hr1G091270.2
Wheat TraesCS2B02G389400 , TraesCS2A02G372400 , TraesCS2D02G368600
Populus -


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cDNA sequences
Sobic.006G157700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G239800 FGGY family of carbohydrate kinases, putative, expressed K00864: glpK, glycerol kinase
2 Sobic.006G127100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@malate synthase, glyoxysomal, putative, expressed K01638: aceB, malate synthase
3 Sobic.005G024900 major facilitator superfamily antiporter, putative, expressed -
4 Sobic.003G241000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@CTP synthase, putative, expressed K01937: pyrG, CTP synthase
5 Sobic.003G241500 dehydrogenase, putative, expressed K00031: IDH1, IDH2, isocitrate dehydrogenase
6 Sobic.003G061800 glutaryl-CoA dehydrogenase, mitochondrial precursor, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
7 Sobic.002G175500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OsSCP44 - Putative Serine Carboxypeptidase homologue, expressed K16296: serine carboxypeptidase-like clade I
8 Sobic.003G354400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@acyl-coenzyme A oxidase, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
9 Sobic.004G345800 Peroxisomal 3-ketoacyl-CoA thiolase 3 PKT3 (At)(PubMedID : 27208977)@3-ketoacyl-CoA thiolase, peroxisomal precursor, putative, expressed K07513: acetyl-CoA acyltransferase 1
10 Sobic.002G188500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@trehalose-6-phosphate synthase, putative, expressed K16055: trehalose 6-phosphate synthase/phosphatase
11 Sobic.007G128600 CC-NBS-LRR protein, putative, expressed -
12 Sobic.008G144401 - -
13 Sobic.002G113300 expressed protein -
14 Sobic.010G274500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@catalase isozyme B, putative, expressed K03781: katE, CAT, catB, catalase
15 Sobic.001G120300 phytanoyl-CoA dioxygenase, putative, expressed K00477: phytanoyl-CoA hydroxylase
16 Sobic.004G037900 GHMP kinases ATP-binding protein, putative, expressed K12446: L-arabinokinase
17 Sobic.001G373100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@RING finger and CHY zinc finger domain-containing protein 1, putative, expressed K10144: RCHY1, RING finger and CHY zinc finger domain-containing protein 1
18 Sobic.009G177400 leucine-rich repeat family protein, putative, expressed -
19 Sobic.006G149700 DUF584 domain containing protein, putative, expressed -
20 Sobic.003G145900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@acyltransferase, putative, expressed K13510: lysophosphatidylcholine acyltransferase / lyso-PAF acetyltransferase


Gene co-expression network
sample Sobic006G157700 Sobic006G157700 Sobic006G239800 Sobic006G239800 Sobic006G157700--Sobic006G239800 Sobic006G127100 Sobic006G127100 Sobic006G157700--Sobic006G127100 Sobic005G024900 Sobic005G024900 Sobic006G157700--Sobic005G024900 Sobic003G241000 Sobic003G241000 Sobic006G157700--Sobic003G241000 Sobic003G241500 Sobic003G241500 Sobic006G157700--Sobic003G241500 Sobic003G061800 Sobic003G061800 Sobic006G157700--Sobic003G061800 Sobic002G175500 Sobic002G175500 Sobic006G157700--Sobic002G175500 Sobic003G354400 Sobic003G354400 Sobic006G157700--Sobic003G354400 Sobic004G345800 Sobic004G345800 Sobic006G157700--Sobic004G345800 Sobic006G239800--Sobic006G157700 Sobic005G044800 Sobic005G044800 Sobic006G239800--Sobic005G044800 Sobic001G057200 Sobic001G057200 Sobic006G239800--Sobic001G057200 Sobic006G222100 Sobic006G222100 Sobic006G239800--Sobic006G222100 Sobic009G177400 Sobic009G177400 Sobic006G239800--Sobic009G177400 Sobic010G274500 Sobic010G274500 Sobic006G239800--Sobic010G274500 Sobic006G176600 Sobic006G176600 Sobic006G239800--Sobic006G176600 Sobic006G239800--Sobic003G354400 Sobic001G120300 Sobic001G120300 Sobic006G239800--Sobic001G120300 Sobic007G219900 Sobic007G219900 Sobic006G127100--Sobic007G219900 Sobic002G113300 Sobic002G113300 Sobic006G127100--Sobic002G113300 Sobic006G127100--Sobic004G345800 Sobic004G333200 Sobic004G333200 Sobic006G127100--Sobic004G333200 Sobic004G321800 Sobic004G321800 Sobic006G127100--Sobic004G321800 Sobic003G148800 Sobic003G148800 Sobic006G127100--Sobic003G148800 Sobic003G366400 Sobic003G366400 Sobic006G127100--Sobic003G366400 Sobic002G324000 Sobic002G324000 Sobic006G127100--Sobic002G324000 Sobic003G184900 Sobic003G184900 Sobic006G127100--Sobic003G184900 Sobic002G087800 Sobic002G087800 Sobic005G024900--Sobic002G087800 Sobic001G132000 Sobic001G132000 Sobic005G024900--Sobic001G132000 Sobic003G061400 Sobic003G061400 Sobic005G024900--Sobic003G061400 Sobic003G440900 Sobic003G440900 Sobic005G024900--Sobic003G440900 Sobic005G024900--Sobic003G241500 Sobic005G024900--Sobic004G333200 Sobic006G244400 Sobic006G244400 Sobic005G024900--Sobic006G244400 Sobic005G152200 Sobic005G152200 Sobic005G024900--Sobic005G152200 Sobic005G024900--Sobic006G127100 Sobic008G021800 Sobic008G021800 Sobic003G241000--Sobic008G021800 Sobic003G241000--Sobic002G113300 Sobic001G447500 Sobic001G447500 Sobic003G241000--Sobic001G447500 Sobic003G241000--Sobic006G127100 Sobic004G297400 Sobic004G297400 Sobic003G241000--Sobic004G297400 Sobic001G156100 Sobic001G156100 Sobic003G241000--Sobic001G156100 Sobic003G241000--Sobic003G061400 Sobic001G408200 Sobic001G408200 Sobic003G241000--Sobic001G408200 Sobic003G241000--Sobic003G061800 Sobic003G241500--Sobic002G087800 Sobic002G315800 Sobic002G315800 Sobic003G241500--Sobic002G315800 Sobic002G415900 Sobic002G415900 Sobic003G241500--Sobic002G415900 Sobic003G241500--Sobic005G024900 Sobic003G241500--Sobic004G345800 Sobic009G057300 Sobic009G057300 Sobic003G241500--Sobic009G057300 Sobic004G127700 Sobic004G127700 Sobic003G241500--Sobic004G127700 Sobic001G474500 Sobic001G474500 Sobic003G241500--Sobic001G474500 Sobic003G428400 Sobic003G428400 Sobic003G241500--Sobic003G428400 Sobic003G061800--Sobic009G057300 Sobic003G061800--Sobic004G345800 Sobic003G061800--Sobic003G354400 Sobic003G061800--Sobic001G474500 Sobic009G126900 Sobic009G126900 Sobic003G061800--Sobic009G126900 Sobic003G388251 Sobic003G388251 Sobic003G061800--Sobic003G388251 Sobic007G068100 Sobic007G068100 Sobic003G061800--Sobic007G068100 Sobic003G329400 Sobic003G329400 Sobic003G061800--Sobic003G329400 Sobic004G101900 Sobic004G101900 Sobic003G061800--Sobic004G101900 Sobic002G258100 Sobic002G258100 Sobic002G175500--Sobic002G258100 Sobic001G393800 Sobic001G393800 Sobic002G175500--Sobic001G393800 Sobic008G107500 Sobic008G107500 Sobic002G175500--Sobic008G107500 Sobic001G023200 Sobic001G023200 Sobic002G175500--Sobic001G023200 Sobic002G175500--Sobic009G177400 Sobic002G175500--Sobic006G157700 Sobic001G010400 Sobic001G010400 Sobic002G175500--Sobic001G010400 Sobic001G253600 Sobic001G253600 Sobic002G175500--Sobic001G253600 Sobic003G009100 Sobic003G009100 Sobic002G175500--Sobic003G009100 Sobic003G354400--Sobic003G061800 Sobic003G354400--Sobic003G329400 Sobic003G354400--Sobic009G057300 Sobic010G130200 Sobic010G130200 Sobic003G354400--Sobic010G130200 Sobic008G144401 Sobic008G144401 Sobic003G354400--Sobic008G144401 Sobic003G354400--Sobic001G120300 Sobic001G111150 Sobic001G111150 Sobic003G354400--Sobic001G111150 Sobic008G147700 Sobic008G147700 Sobic003G354400--Sobic008G147700 Sobic003G354400--Sobic009G126900 Sobic004G345800--Sobic003G061800 Sobic004G345800--Sobic001G474500 Sobic004G345800--Sobic003G184900 Sobic004G345800--Sobic003G388251 Sobic008G079300 Sobic008G079300 Sobic004G345800--Sobic008G079300 Sobic004G345800--Sobic007G068100 Sobic004G345800--Sobic009G057300 Sobic004G345800--Sobic006G127100 Sobic004G345800--Sobic004G321800
Octagon: transcription factors


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