Gene annotation
Transcriptome id Sobic.002G175500.1
Synonym Sb02g022430, scpl17
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
OsSCP44 - Putative Serine Carboxypeptidase homologue, expressed
UniProt A0A1B6QC24
Pfam PF00450
Panther DB PTHR11802 PTHR11802:SF47
NCBI CDD KOG1282; Serine carboxypeptidases (lysosomal cathepsin A)
KEGG Orthology K16296; serine carboxypeptidase-like clade I
Gene Ontology GO:0006508; proteolysis GO:0004185serine-type carboxypeptidase activity


Orthologs (automatic annotation)
TAIR AT3G12203 : serine carboxypeptidase-like 17
RAP-DB (Rice) LOC_Os10g01110.1 : OsSCP44 - Putative Serine Carboxypeptidase homologue, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat TraesCS2A02G315400 , TraesCS7A02G002500
Populus -


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cDNA sequences
Sobic.002G175500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G258100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
2 Sobic.001G393800 enoyl-CoA hydratase/isomerase family protein, putative, expressed -
3 Sobic.008G107500 WRKY96, expressed -
4 Sobic.001G023200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@electron transfer flavoprotein subunit alpha, mitochondrial precursor, putative, expressed K03522: fixB, electron transfer flavoprotein alpha subunit
5 Sobic.009G177400 leucine-rich repeat family protein, putative, expressed -
6 Sobic.006G157700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@glycosyl hydrolase family 3 protein, putative, expressed -
7 Sobic.001G010400 snRK1-interacting protein 1, putative, expressed -
8 Sobic.001G253600 expressed protein -
9 Sobic.003G009100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@peroxisomal membrane protein, putative, expressed K13348: protein Mpv17
10 Sobic.010G274500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@catalase isozyme B, putative, expressed K03781: katE, CAT, catB, catalase
11 Sobic.005G150800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@yippee zinc-binding protein, putative, expressed -
12 Sobic.006G239800 FGGY family of carbohydrate kinases, putative, expressed K00864: glpK, glycerol kinase
13 Sobic.002G050200 expressed protein -
14 Sobic.007G002200 glycine-rich RNA-binding protein 7, putative, expressed K12885: RBMX, heterogeneous nuclear ribonucleoprotein G
15 Sobic.002G376300 FYVE zinc finger family protein, expressed -
16 Sobic.004G297400 enoyl-CoA hydratase/isomerase family protein, putative, expressed K05607: methylglutaconyl-CoA hydratase
17 Sobic.002G113300 expressed protein -
18 Sobic.006G240800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@myosin-Ie, putative, expressed -
19 Sobic.003G354400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@acyl-coenzyme A oxidase, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
20 Sobic.004G173500 CAMK_CAMK_like.13 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K14498: serine/threonine-protein kinase SRK2


Gene co-expression network
sample Sobic002G175500 Sobic002G175500 Sobic002G258100 Sobic002G258100 Sobic002G175500--Sobic002G258100 Sobic001G393800 Sobic001G393800 Sobic002G175500--Sobic001G393800 Sobic008G107500 Sobic008G107500 Sobic002G175500--Sobic008G107500 Sobic001G023200 Sobic001G023200 Sobic002G175500--Sobic001G023200 Sobic009G177400 Sobic009G177400 Sobic002G175500--Sobic009G177400 Sobic006G157700 Sobic006G157700 Sobic002G175500--Sobic006G157700 Sobic001G010400 Sobic001G010400 Sobic002G175500--Sobic001G010400 Sobic001G253600 Sobic001G253600 Sobic002G175500--Sobic001G253600 Sobic003G009100 Sobic003G009100 Sobic002G175500--Sobic003G009100 Sobic002G258100--Sobic002G175500 Sobic002G258100--Sobic008G107500 Sobic010G144400 Sobic010G144400 Sobic002G258100--Sobic010G144400 Sobic002G258100--Sobic001G010400 Sobic002G258100--Sobic001G023200 Sobic002G258100--Sobic001G253600 Sobic001G056700 Sobic001G056700 Sobic002G258100--Sobic001G056700 Sobic004G172700 Sobic004G172700 Sobic002G258100--Sobic004G172700 Sobic002G258100--Sobic001G393800 Sobic001G393800--Sobic008G107500 Sobic005G150800 Sobic005G150800 Sobic001G393800--Sobic005G150800 Sobic001G393800--Sobic001G010400 Sobic003G333400 Sobic003G333400 Sobic001G393800--Sobic003G333400 Sobic004G167400 Sobic004G167400 Sobic001G393800--Sobic004G167400 Sobic001G057800 Sobic001G057800 Sobic001G393800--Sobic001G057800 Sobic001G393800--Sobic002G175500 Sobic009G099500 Sobic009G099500 Sobic001G393800--Sobic009G099500 Sobic001G393800--Sobic001G023200 Sobic008G107500--Sobic002G258100 Sobic008G107500--Sobic001G393800 Sobic008G107500--Sobic005G150800 Sobic002G180600 Sobic002G180600 Sobic008G107500--Sobic002G180600 Sobic008G107500--Sobic001G010400 Sobic003G295400 Sobic003G295400 Sobic008G107500--Sobic003G295400 Sobic004G203100 Sobic004G203100 Sobic008G107500--Sobic004G203100 Sobic008G107500--Sobic002G175500 Sobic009G003900 Sobic009G003900 Sobic008G107500--Sobic009G003900 Sobic001G023200--Sobic003G009100 Sobic001G023200--Sobic002G258100 Sobic001G023200--Sobic001G010400 Sobic004G347300 Sobic004G347300 Sobic001G023200--Sobic004G347300 Sobic001G023200--Sobic001G393800 Sobic001G023200--Sobic004G203100 Sobic010G016400 Sobic010G016400 Sobic001G023200--Sobic010G016400 Sobic002G113300 Sobic002G113300 Sobic001G023200--Sobic002G113300 Sobic007G106900 Sobic007G106900 Sobic001G023200--Sobic007G106900 Sobic002G114800 Sobic002G114800 Sobic009G177400--Sobic002G114800 Sobic008G144401 Sobic008G144401 Sobic009G177400--Sobic008G144401 Sobic009G177400--Sobic002G258100 Sobic009G177400--Sobic008G107500 Sobic003G354400 Sobic003G354400 Sobic009G177400--Sobic003G354400 Sobic010G274500 Sobic010G274500 Sobic009G177400--Sobic010G274500 Sobic009G177400--Sobic002G175500 Sobic004G163300 Sobic004G163300 Sobic009G177400--Sobic004G163300 Sobic007G098400 Sobic007G098400 Sobic009G177400--Sobic007G098400 Sobic006G239800 Sobic006G239800 Sobic006G157700--Sobic006G239800 Sobic006G127100 Sobic006G127100 Sobic006G157700--Sobic006G127100 Sobic005G024900 Sobic005G024900 Sobic006G157700--Sobic005G024900 Sobic003G241000 Sobic003G241000 Sobic006G157700--Sobic003G241000 Sobic003G241500 Sobic003G241500 Sobic006G157700--Sobic003G241500 Sobic003G061800 Sobic003G061800 Sobic006G157700--Sobic003G061800 Sobic006G157700--Sobic002G175500 Sobic006G157700--Sobic003G354400 Sobic004G345800 Sobic004G345800 Sobic006G157700--Sobic004G345800 Sobic002G249000 Sobic002G249000 Sobic001G010400--Sobic002G249000 Sobic007G148800 Sobic007G148800 Sobic001G010400--Sobic007G148800 Sobic004G185900 Sobic004G185900 Sobic001G010400--Sobic004G185900 Sobic002G113800 Sobic002G113800 Sobic001G010400--Sobic002G113800 Sobic001G010400--Sobic001G393800 Sobic001G010400--Sobic002G258100 Sobic001G010400--Sobic002G180600 Sobic001G010400--Sobic008G107500 Sobic001G010400--Sobic010G016400 Sobic010G228600 Sobic010G228600 Sobic001G253600--Sobic010G228600 Sobic001G253600--Sobic010G144400 Sobic001G253600--Sobic001G056700 Sobic001G253600--Sobic002G258100 Sobic001G471900 Sobic001G471900 Sobic001G253600--Sobic001G471900 Sobic001G149700 Sobic001G149700 Sobic001G253600--Sobic001G149700 Sobic008G106800 Sobic008G106800 Sobic001G253600--Sobic008G106800 Sobic007G126200 Sobic007G126200 Sobic001G253600--Sobic007G126200 Sobic003G116700 Sobic003G116700 Sobic001G253600--Sobic003G116700 Sobic003G009100--Sobic001G023200 Sobic003G009100--Sobic003G354400 Sobic003G009100--Sobic005G150800 Sobic003G009100--Sobic002G113300 Sobic002G132000 Sobic002G132000 Sobic003G009100--Sobic002G132000 Sobic004G006200 Sobic004G006200 Sobic003G009100--Sobic004G006200 Sobic009G054700 Sobic009G054700 Sobic003G009100--Sobic009G054700 Sobic003G009100--Sobic004G203100 Sobic006G192700 Sobic006G192700 Sobic003G009100--Sobic006G192700
Octagon: transcription factors


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