Gene annotation
Transcriptome id Sobic.002G050200.1,Sobic.002G050200.2
Synonym Sb02g004205
Functional annotation expressed protein
UniProt C5XAF6 , A0A1B6Q9A2
Pfam PF03647
Panther DB PTHR12668 PTHR12668:SF18
NCBI CDD KOG4267; Predicted membrane protein
KEGG Orthology -
Gene Ontology GO:0016020; membrane


Orthologs (automatic annotation)
TAIR AT3G57280 : Transmembrane proteins 14C
RAP-DB (Rice) LOC_Os06g19690.1 : expressed protein
MaizeGDB (Corn) Zm00025a045144 , Zm00025a047564
Brachypodium KQK18514
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.002G050200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G016201 - K09481: SEC61B, protein transport protein SEC61 subunit beta
2 Sobic.010G029400 peptidase, T1 family, putative, expressed K02738: 20S proteasome subunit beta 1
3 Sobic.007G095400 expressed protein -
4 Sobic.008G058300 RNA polymerases N 8 kDa subunit, putative, expressed K03007: RPB10, DNA-directed RNA polymerases I, II, and III subunit RPABC5
5 Sobic.009G045800 bifunctional protein folD, putative, expressed -
6 Sobic.004G300900 OsGrx_C3 - glutaredoxin subgroup I, expressed K03676: grxC, GLRX, glutaredoxin 3
7 Sobic.002G263800 peptidase, T1 family, putative, expressed K02736: 20S proteasome subunit beta 7
8 Sobic.001G005900 PPR repeat domain containing protein, putative, expressed -
9 Sobic.002G406500 elongation factor protein, putative, expressed K03232: elongation factor 1-beta
10 Sobic.002G261800 snRK1-interacting protein 1, putative, expressed -
11 Sobic.010G173100 elongation factor 1-gamma, putative, expressed K03233: elongation factor 1-gamma
12 Sobic.001G083200 eukaryotic translation initiation factor 5A, putative, expressed K03263: translation initiation factor 5A
K02180: cell cycle arrest protein BUB3
13 Sobic.008G132800 expressed protein -
14 Sobic.009G065400 ribosomal protein L13, putative, expressed K02873: RP-L13e, large subunit ribosomal protein L13e
15 Sobic.001G048832 - -
16 Sobic.010G018400 expressed protein K02153: ATPeV0E, V-type H+-transporting ATPase subunit e
17 Sobic.001G364500 peptide methionine sulfoxide reductase msrB, putative, expressed K07305: peptide-methionine (R)-S-oxide reductase
18 Sobic.005G157200 prefoldin subunit, putative, expressed K09549: prefoldin subunit 2
19 Sobic.002G078400 ADP-ribosylation factor, putative, expressed K07937: ADP-ribosylation factor 1/2
K07977: Arf/Sar family, other
20 Sobic.003G025200 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e


Gene co-expression network
sample Sobic002G050200 Sobic002G050200 Sobic009G016201 Sobic009G016201 Sobic002G050200--Sobic009G016201 Sobic010G029400 Sobic010G029400 Sobic002G050200--Sobic010G029400 Sobic007G095400 Sobic007G095400 Sobic002G050200--Sobic007G095400 Sobic008G058300 Sobic008G058300 Sobic002G050200--Sobic008G058300 Sobic009G045800 Sobic009G045800 Sobic002G050200--Sobic009G045800 Sobic004G300900 Sobic004G300900 Sobic002G050200--Sobic004G300900 Sobic002G263800 Sobic002G263800 Sobic002G050200--Sobic002G263800 Sobic001G005900 Sobic001G005900 Sobic002G050200--Sobic001G005900 Sobic002G406500 Sobic002G406500 Sobic002G050200--Sobic002G406500 Sobic009G016201--Sobic002G263800 Sobic009G016201--Sobic007G095400 Sobic008G132800 Sobic008G132800 Sobic009G016201--Sobic008G132800 Sobic004G172700 Sobic004G172700 Sobic009G016201--Sobic004G172700 Sobic003G249800 Sobic003G249800 Sobic009G016201--Sobic003G249800 Sobic001G037000 Sobic001G037000 Sobic009G016201--Sobic001G037000 Sobic008G161000 Sobic008G161000 Sobic009G016201--Sobic008G161000 Sobic010G237000 Sobic010G237000 Sobic009G016201--Sobic010G237000 Sobic009G016201--Sobic010G029400 Sobic010G029400--Sobic008G132800 Sobic002G078400 Sobic002G078400 Sobic010G029400--Sobic002G078400 Sobic003G025200 Sobic003G025200 Sobic010G029400--Sobic003G025200 Sobic010G029400--Sobic002G406500 Sobic002G115000 Sobic002G115000 Sobic010G029400--Sobic002G115000 Sobic005G157200 Sobic005G157200 Sobic010G029400--Sobic005G157200 Sobic010G029400--Sobic008G058300 Sobic001G377800 Sobic001G377800 Sobic010G029400--Sobic001G377800 Sobic010G029400--Sobic009G016201 Sobic007G095400--Sobic002G263800 Sobic007G095400--Sobic009G016201 Sobic008G161800 Sobic008G161800 Sobic007G095400--Sobic008G161800 Sobic010G039800 Sobic010G039800 Sobic007G095400--Sobic010G039800 Sobic009G180000 Sobic009G180000 Sobic007G095400--Sobic009G180000 Sobic004G196300 Sobic004G196300 Sobic007G095400--Sobic004G196300 Sobic001G483100 Sobic001G483100 Sobic007G095400--Sobic001G483100 Sobic010G173100 Sobic010G173100 Sobic007G095400--Sobic010G173100 Sobic010G042800 Sobic010G042800 Sobic007G095400--Sobic010G042800 Sobic008G058300--Sobic005G157200 Sobic008G058300--Sobic003G025200 Sobic001G331900 Sobic001G331900 Sobic008G058300--Sobic001G331900 Sobic006G052400 Sobic006G052400 Sobic008G058300--Sobic006G052400 Sobic008G058300--Sobic004G300900 Sobic008G058300--Sobic010G029400 Sobic004G002350 Sobic004G002350 Sobic008G058300--Sobic004G002350 Sobic008G058300--Sobic002G078400 Sobic008G058300--Sobic001G377800 Sobic010G038700 Sobic010G038700 Sobic009G045800--Sobic010G038700 Sobic004G066800 Sobic004G066800 Sobic009G045800--Sobic004G066800 Sobic009G045800--Sobic010G029400 Sobic003G330500 Sobic003G330500 Sobic009G045800--Sobic003G330500 Sobic003G405900 Sobic003G405900 Sobic009G045800--Sobic003G405900 Sobic009G045800--Sobic010G042800 Sobic009G045800--Sobic002G406500 Sobic007G091000 Sobic007G091000 Sobic009G045800--Sobic007G091000 Sobic004G224900 Sobic004G224900 Sobic009G045800--Sobic004G224900 Sobic004G300900--Sobic002G078400 Sobic006G141500 Sobic006G141500 Sobic004G300900--Sobic006G141500 Sobic009G198500 Sobic009G198500 Sobic004G300900--Sobic009G198500 Sobic004G300900--Sobic001G331900 Sobic004G300900--Sobic001G005900 Sobic004G225500 Sobic004G225500 Sobic004G300900--Sobic004G225500 Sobic004G300900--Sobic008G058300 Sobic003G115800 Sobic003G115800 Sobic004G300900--Sobic003G115800 Sobic001G445800 Sobic001G445800 Sobic004G300900--Sobic001G445800 Sobic002G263800--Sobic008G161800 Sobic002G263800--Sobic007G095400 Sobic002G263800--Sobic001G483100 Sobic002G263800--Sobic009G180000 Sobic002G263800--Sobic010G173100 Sobic002G263800--Sobic010G039800 Sobic002G263800--Sobic009G016201 Sobic010G204500 Sobic010G204500 Sobic002G263800--Sobic010G204500 Sobic004G310300 Sobic004G310300 Sobic002G263800--Sobic004G310300 Sobic001G005900--Sobic009G198500 Sobic004G327300 Sobic004G327300 Sobic001G005900--Sobic004G327300 Sobic001G005900--Sobic004G300900 Sobic001G048832 Sobic001G048832 Sobic001G005900--Sobic001G048832 Sobic001G005900--Sobic002G078400 Sobic001G502200 Sobic001G502200 Sobic001G005900--Sobic001G502200 Sobic004G130900 Sobic004G130900 Sobic001G005900--Sobic004G130900 Sobic007G096700 Sobic007G096700 Sobic001G005900--Sobic007G096700 Sobic001G501200 Sobic001G501200 Sobic001G005900--Sobic001G501200 Sobic001G085400 Sobic001G085400 Sobic002G406500--Sobic001G085400 Sobic002G406500--Sobic001G377800 Sobic001G436200 Sobic001G436200 Sobic002G406500--Sobic001G436200 Sobic002G056200 Sobic002G056200 Sobic002G406500--Sobic002G056200 Sobic006G138100 Sobic006G138100 Sobic002G406500--Sobic006G138100 Sobic002G406500--Sobic002G115000 Sobic002G049300 Sobic002G049300 Sobic002G406500--Sobic002G049300 Sobic002G047600 Sobic002G047600 Sobic002G406500--Sobic002G047600 Sobic002G304900 Sobic002G304900 Sobic002G406500--Sobic002G304900
Octagon: transcription factors


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