Gene annotation
Transcriptome id Sobic.001G364500.1
Synonym MSRB2, Sb01g034750
Functional annotation peptide methionine sulfoxide reductase msrB, putative, expressed
UniProt C5WZL1
Pfam PF01641
Panther DB PTHR10173 PTHR10173:SF19
NCBI CDD KOG0856; Predicted pilin-like transcription factor
KEGG Orthology K07305; peptide-methionine (R)-S-oxide reductase
Gene Ontology GO:0016671; oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor GO:0006979response to oxidative stress


Orthologs (automatic annotation)
TAIR AT4G21860 : methionine sulfoxide reductase B 2
RAP-DB (Rice) LOC_Os03g24600.1 : peptide methionine sulfoxide reductase msrB, putative, expressed
MaizeGDB (Corn) Zm00025a002570
Brachypodium -
Barley -
Wheat TraesCS6B02G362800 , TraesCS6B02G362800 , TraesCS6A02G332000
Populus -


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cDNA sequences
Sobic.001G364500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G351500 - -
2 Sobic.004G225500 bolA, putative, expressed K05527: BolA family transcriptional regulator, general stress-responsive regulator
3 Sobic.004G224900 peptidase, T1 family, putative, expressed K02726: 20S proteasome subunit alpha 2
4 Sobic.001G005900 PPR repeat domain containing protein, putative, expressed -
5 Sobic.001G048832 - -
6 Sobic.007G078100 UPF0041 domain containing protein, putative, expressed -
7 Sobic.002G155500 ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
8 Sobic.001G132100 expressed protein -
9 Sobic.001G236300 cell division control protein 48 homolog E, putative, expressed K13525: VCP, transitional endoplasmic reticulum ATPase
10 Sobic.002G078400 ADP-ribosylation factor, putative, expressed K07937: ADP-ribosylation factor 1/2
K07977: Arf/Sar family, other
11 Sobic.003G330500 peptidase, T1 family, putative, expressed -
12 Sobic.001G538600 rhodanese, putative, expressed K18065: Cdc25 family phosphatase
13 Sobic.001G172000 expressed protein -
14 Sobic.009G111600 expressed protein -
15 Sobic.004G272300 expressed protein -
16 Sobic.004G300900 OsGrx_C3 - glutaredoxin subgroup I, expressed K03676: grxC, GLRX, glutaredoxin 3
17 Sobic.010G154700 - -
18 Sobic.001G418900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.001G034700 actin-depolymerizing factor, putative, expressed K05765: cofilin
20 Sobic.004G284500 ORM1, putative, expressed -


Gene co-expression network
sample Sobic001G364500 Sobic001G364500 Sobic004G351500 Sobic004G351500 Sobic001G364500--Sobic004G351500 Sobic004G225500 Sobic004G225500 Sobic001G364500--Sobic004G225500 Sobic004G224900 Sobic004G224900 Sobic001G364500--Sobic004G224900 Sobic001G005900 Sobic001G005900 Sobic001G364500--Sobic001G005900 Sobic001G048832 Sobic001G048832 Sobic001G364500--Sobic001G048832 Sobic007G078100 Sobic007G078100 Sobic001G364500--Sobic007G078100 Sobic002G155500 Sobic002G155500 Sobic001G364500--Sobic002G155500 Sobic001G132100 Sobic001G132100 Sobic001G364500--Sobic001G132100 Sobic001G236300 Sobic001G236300 Sobic001G364500--Sobic001G236300 Sobic004G351500--Sobic001G364500 Sobic001G087900 Sobic001G087900 Sobic004G351500--Sobic001G087900 Sobic004G351500--Sobic002G155500 Sobic001G034700 Sobic001G034700 Sobic004G351500--Sobic001G034700 Sobic009G062000 Sobic009G062000 Sobic004G351500--Sobic009G062000 Sobic004G351500--Sobic004G225500 Sobic001G536500 Sobic001G536500 Sobic004G351500--Sobic001G536500 Sobic002G078400 Sobic002G078400 Sobic004G351500--Sobic002G078400 Sobic008G129400 Sobic008G129400 Sobic004G351500--Sobic008G129400 Sobic008G189300 Sobic008G189300 Sobic004G225500--Sobic008G189300 Sobic004G225500--Sobic002G155500 Sobic004G272800 Sobic004G272800 Sobic004G225500--Sobic004G272800 Sobic004G300900 Sobic004G300900 Sobic004G225500--Sobic004G300900 Sobic004G225500--Sobic001G048832 Sobic001G340500 Sobic001G340500 Sobic004G225500--Sobic001G340500 Sobic002G153500 Sobic002G153500 Sobic004G225500--Sobic002G153500 Sobic010G154700 Sobic010G154700 Sobic004G225500--Sobic010G154700 Sobic010G121300 Sobic010G121300 Sobic004G225500--Sobic010G121300 Sobic003G330500 Sobic003G330500 Sobic004G224900--Sobic003G330500 Sobic006G252200 Sobic006G252200 Sobic004G224900--Sobic006G252200 Sobic007G176200 Sobic007G176200 Sobic004G224900--Sobic007G176200 Sobic004G138800 Sobic004G138800 Sobic004G224900--Sobic004G138800 Sobic007G076300 Sobic007G076300 Sobic004G224900--Sobic007G076300 Sobic001G481700 Sobic001G481700 Sobic004G224900--Sobic001G481700 Sobic001G502200 Sobic001G502200 Sobic004G224900--Sobic001G502200 Sobic001G458700 Sobic001G458700 Sobic004G224900--Sobic001G458700 Sobic004G224900--Sobic001G236300 Sobic009G198500 Sobic009G198500 Sobic001G005900--Sobic009G198500 Sobic004G327300 Sobic004G327300 Sobic001G005900--Sobic004G327300 Sobic001G005900--Sobic004G300900 Sobic001G005900--Sobic001G048832 Sobic001G005900--Sobic002G078400 Sobic001G005900--Sobic001G502200 Sobic004G130900 Sobic004G130900 Sobic001G005900--Sobic004G130900 Sobic007G096700 Sobic007G096700 Sobic001G005900--Sobic007G096700 Sobic001G501200 Sobic001G501200 Sobic001G005900--Sobic001G501200 Sobic001G048832--Sobic010G154700 Sobic001G048832--Sobic001G132100 Sobic007G051000 Sobic007G051000 Sobic001G048832--Sobic007G051000 Sobic009G176000 Sobic009G176000 Sobic001G048832--Sobic009G176000 Sobic005G188100 Sobic005G188100 Sobic001G048832--Sobic005G188100 Sobic002G190900 Sobic002G190900 Sobic001G048832--Sobic002G190900 Sobic009G119900 Sobic009G119900 Sobic001G048832--Sobic009G119900 Sobic001G048832--Sobic004G272800 Sobic002G398901 Sobic002G398901 Sobic001G048832--Sobic002G398901 Sobic004G276100 Sobic004G276100 Sobic007G078100--Sobic004G276100 Sobic002G257300 Sobic002G257300 Sobic007G078100--Sobic002G257300 Sobic007G161400 Sobic007G161400 Sobic007G078100--Sobic007G161400 Sobic007G078100--Sobic010G154700 Sobic007G078100--Sobic004G272800 Sobic004G051700 Sobic004G051700 Sobic007G078100--Sobic004G051700 Sobic007G078100--Sobic005G188100 Sobic007G078100--Sobic001G132100 Sobic007G078100--Sobic001G048832 Sobic002G155500--Sobic004G225500 Sobic002G155500--Sobic010G121300 Sobic002G155500--Sobic004G351500 Sobic002G155500--Sobic007G078100 Sobic002G155500--Sobic004G272800 Sobic002G155500--Sobic001G048832 Sobic002G155500--Sobic004G276100 Sobic002G155500--Sobic002G153500 Sobic002G233100 Sobic002G233100 Sobic002G155500--Sobic002G233100 Sobic001G132100--Sobic001G048832 Sobic001G132100--Sobic010G154700 Sobic001G132100--Sobic002G190900 Sobic001G132100--Sobic005G188100 Sobic001G132100--Sobic007G051000 Sobic001G132100--Sobic002G398901 Sobic001G132100--Sobic009G119900 Sobic010G018400 Sobic010G018400 Sobic001G132100--Sobic010G018400 Sobic001G132100--Sobic004G272800 Sobic003G367451 Sobic003G367451 Sobic001G236300--Sobic003G367451 Sobic001G236300--Sobic004G224900 Sobic007G114200 Sobic007G114200 Sobic001G236300--Sobic007G114200 Sobic001G236300--Sobic004G272800 Sobic001G058100 Sobic001G058100 Sobic001G236300--Sobic001G058100 Sobic001G236300--Sobic001G132100 Sobic001G236300--Sobic006G252200 Sobic004G335000 Sobic004G335000 Sobic001G236300--Sobic004G335000 Sobic007G045600 Sobic007G045600 Sobic001G236300--Sobic007G045600
Octagon: transcription factors


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