Gene annotation
Transcriptome id Sobic.002G315800.1,Sobic.002G315800.3,Sobic.002G315800.2
Synonym Sb02g034490
Functional annotation Papain family cysteine protease domain containing protein, expressed
UniProt A0A1B6QEF5 , A0A1B6QEG2
Pfam PF08127 PF00112
Panther DB PTHR12411 PTHR12411:SF367
NCBI CDD KOG1543; Cysteine proteinase Cathepsin L
KEGG Orthology K01363; cathepsin B
Gene Ontology GO:0004197; cysteine-type endopeptidase activity GO:0008234cysteine-type peptidase activity GO:0006508proteolysis


Orthologs (automatic annotation)
TAIR AT4G01610 : Cysteine proteinases superfamily protein
RAP-DB (Rice) LOC_Os05g24550.2 : Papain family cysteine protease domain containing protein, expressed
MaizeGDB (Corn) Zm00025a048207
Brachypodium KQK13373 , KQK13374
Barley HORVU4Hr1G010360.8 , HORVU4Hr1G010360.9 , HORVU4Hr1G010360.2 , HORVU4Hr1G010360.3 , HORVU4Hr1G010360.1 , HORVU4Hr1G010360.6 , HORVU4Hr1G010360.7 , HORVU4Hr1G010390.9 , HORVU4Hr1G010390.8 , HORVU4Hr1G010390.7 , HORVU4Hr1G010390.6 , HORVU4Hr1G010390.5 , HORVU4Hr1G010390.4 , HORVU4Hr1G010390.3 , HORVU4Hr1G010390.2 , HORVU4Hr1G010390.1 , HORVU4Hr1G010390.28 , HORVU4Hr1G010390.29 , HORVU4Hr1G010390.26 , HORVU4Hr1G010390.27 , HORVU4Hr1G010390.24 , HORVU4Hr1G010390.22 , HORVU4Hr1G010390.23 , HORVU4Hr1G010390.20 , HORVU4Hr1G010390.21 , HORVU4Hr1G010360.10 , HORVU4Hr1G010360.11 , HORVU4Hr1G010360.12 , HORVU4Hr1G010390.25 , HORVU4Hr1G010390.17 , HORVU4Hr1G010390.16 , HORVU4Hr1G010390.15 , HORVU4Hr1G010390.14 , HORVU4Hr1G010390.13 , HORVU4Hr1G010390.12 , HORVU4Hr1G010390.11 , HORVU4Hr1G010390.10 , HORVU4Hr1G010390.19 , HORVU4Hr1G010390.18
Wheat TraesCS4B02G062400 , TraesCS4A02G252900 , TraesCS4B02G062600 , TraesCS4B02G062600 , TraesCS4B02G062600 , TraesCS4D02G061400 , TraesCS4B02G062500 , TraesCS4A02G252700 , TraesCS4A02G252800
Populus -


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cDNA sequences
Sobic.002G315800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G034700 aspartic proteinase oryzasin-1 precursor, putative, expressed K08245: phytepsin
2 Sobic.003G241500 dehydrogenase, putative, expressed K00031: IDH1, IDH2, isocitrate dehydrogenase
3 Sobic.004G131040 - K03544: clpX, ATP-dependent Clp protease ATP-binding subunit ClpX
4 Sobic.001G111150 - K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
5 Sobic.007G068100 aconitate hydratase protein, putative, expressed K01681: ACO, aconitate hydratase
6 Sobic.002G415900 acyl-CoA dehydrogenase family member 10, putative, expressed K00249: ACADM, acyl-CoA dehydrogenase
7 Sobic.004G124200 3-hydroxyacyl-CoA dehydrogenase, putative, expressed K10527: enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase
8 Sobic.001G474500 mitochondrial carrier protein, putative, expressed -
9 Sobic.004G345800 Peroxisomal 3-ketoacyl-CoA thiolase 3 PKT3 (At)(PubMedID : 27208977)@3-ketoacyl-CoA thiolase, peroxisomal precursor, putative, expressed K07513: acetyl-CoA acyltransferase 1
10 Sobic.010G205500 inorganic H+ pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
11 Sobic.001G325200 Expressed in drought and oxidative stress(PubMedID : 29862293)@aldehyde oxidase, putative, expressed K00106: xanthine dehydrogenase/oxidase
12 Sobic.001G176600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@cytochrome P450, putative, expressed -
13 Sobic.003G010600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K13606: NOL, chlorophyll(ide) b reductase
14 Sobic.010G112300 aluminum-activated malate transporter, putative, expressed -
15 Sobic.002G087800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@1-aminocyclopropane-1-carboxylate oxidase 2, putative, expressed -
16 Sobic.010G203200 protein kinase domain containing protein, expressed -
17 Sobic.006G028100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@electron transfer flavoprotein subunit beta, putative, expressed K03521: fixA, electron transfer flavoprotein beta subunit
18 Sobic.010G001500 AML1, putative, expressed -
19 Sobic.003G388251 - K01166: ribonuclease T2
20 Sobic.001G130000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic002G315800 Sobic002G315800 Sobic009G034700 Sobic009G034700 Sobic002G315800--Sobic009G034700 Sobic003G241500 Sobic003G241500 Sobic002G315800--Sobic003G241500 Sobic004G131040 Sobic004G131040 Sobic002G315800--Sobic004G131040 Sobic001G111150 Sobic001G111150 Sobic002G315800--Sobic001G111150 Sobic007G068100 Sobic007G068100 Sobic002G315800--Sobic007G068100 Sobic002G415900 Sobic002G415900 Sobic002G315800--Sobic002G415900 Sobic004G124200 Sobic004G124200 Sobic002G315800--Sobic004G124200 Sobic001G474500 Sobic001G474500 Sobic002G315800--Sobic001G474500 Sobic004G345800 Sobic004G345800 Sobic002G315800--Sobic004G345800 Sobic005G178100 Sobic005G178100 Sobic009G034700--Sobic005G178100 Sobic003G388251 Sobic003G388251 Sobic009G034700--Sobic003G388251 Sobic009G034700--Sobic004G124200 Sobic009G034700--Sobic001G474500 Sobic001G069900 Sobic001G069900 Sobic009G034700--Sobic001G069900 Sobic006G028900 Sobic006G028900 Sobic009G034700--Sobic006G028900 Sobic008G079300 Sobic008G079300 Sobic009G034700--Sobic008G079300 Sobic001G325200 Sobic001G325200 Sobic009G034700--Sobic001G325200 Sobic001G015500 Sobic001G015500 Sobic009G034700--Sobic001G015500 Sobic002G087800 Sobic002G087800 Sobic003G241500--Sobic002G087800 Sobic003G241500--Sobic002G315800 Sobic003G241500--Sobic002G415900 Sobic005G024900 Sobic005G024900 Sobic003G241500--Sobic005G024900 Sobic003G241500--Sobic004G345800 Sobic009G057300 Sobic009G057300 Sobic003G241500--Sobic009G057300 Sobic004G127700 Sobic004G127700 Sobic003G241500--Sobic004G127700 Sobic003G241500--Sobic001G474500 Sobic003G428400 Sobic003G428400 Sobic003G241500--Sobic003G428400 Sobic010G000600 Sobic010G000600 Sobic004G131040--Sobic010G000600 Sobic004G265800 Sobic004G265800 Sobic004G131040--Sobic004G265800 Sobic002G181300 Sobic002G181300 Sobic004G131040--Sobic002G181300 Sobic001G146800 Sobic001G146800 Sobic004G131040--Sobic001G146800 Sobic004G131040--Sobic002G315800 Sobic006G030600 Sobic006G030600 Sobic004G131040--Sobic006G030600 Sobic007G004500 Sobic007G004500 Sobic004G131040--Sobic007G004500 Sobic002G193100 Sobic002G193100 Sobic004G131040--Sobic002G193100 Sobic003G110000 Sobic003G110000 Sobic004G131040--Sobic003G110000 Sobic010G130200 Sobic010G130200 Sobic001G111150--Sobic010G130200 Sobic001G111150--Sobic007G068100 Sobic001G111150--Sobic009G057300 Sobic003G354400 Sobic003G354400 Sobic001G111150--Sobic003G354400 Sobic010G001500 Sobic010G001500 Sobic001G111150--Sobic010G001500 Sobic001G111150--Sobic003G388251 Sobic001G111150--Sobic001G474500 Sobic001G111150--Sobic004G127700 Sobic001G111150--Sobic004G124200 Sobic007G068100--Sobic001G325200 Sobic007G068100--Sobic001G474500 Sobic007G068100--Sobic003G388251 Sobic003G148800 Sobic003G148800 Sobic007G068100--Sobic003G148800 Sobic007G068100--Sobic009G057300 Sobic004G101900 Sobic004G101900 Sobic007G068100--Sobic004G101900 Sobic007G068100--Sobic003G428400 Sobic009G226300 Sobic009G226300 Sobic007G068100--Sobic009G226300 Sobic004G321800 Sobic004G321800 Sobic007G068100--Sobic004G321800 Sobic002G415900--Sobic007G068100 Sobic002G415900--Sobic001G474500 Sobic002G415900--Sobic009G057300 Sobic002G415900--Sobic003G388251 Sobic002G415900--Sobic001G111150 Sobic001G322700 Sobic001G322700 Sobic002G415900--Sobic001G322700 Sobic003G200100 Sobic003G200100 Sobic002G415900--Sobic003G200100 Sobic003G226200 Sobic003G226200 Sobic002G415900--Sobic003G226200 Sobic002G415900--Sobic004G124200 Sobic004G124200--Sobic003G388251 Sobic004G124200--Sobic004G101900 Sobic004G124200--Sobic001G325200 Sobic004G124200--Sobic001G015500 Sobic009G161000 Sobic009G161000 Sobic004G124200--Sobic009G161000 Sobic010G043400 Sobic010G043400 Sobic004G124200--Sobic010G043400 Sobic006G199000 Sobic006G199000 Sobic004G124200--Sobic006G199000 Sobic004G124200--Sobic007G068100 Sobic004G124200--Sobic005G178100 Sobic001G474500--Sobic007G068100 Sobic001G474500--Sobic001G325200 Sobic001G474500--Sobic009G057300 Sobic004G060900 Sobic004G060900 Sobic001G474500--Sobic004G060900 Sobic001G474500--Sobic003G388251 Sobic001G474500--Sobic004G321800 Sobic001G474500--Sobic003G428400 Sobic001G130000 Sobic001G130000 Sobic001G474500--Sobic001G130000 Sobic001G474500--Sobic009G034700 Sobic003G061800 Sobic003G061800 Sobic004G345800--Sobic003G061800 Sobic004G345800--Sobic001G474500 Sobic003G184900 Sobic003G184900 Sobic004G345800--Sobic003G184900 Sobic004G345800--Sobic003G388251 Sobic004G345800--Sobic008G079300 Sobic004G345800--Sobic007G068100 Sobic004G345800--Sobic009G057300 Sobic006G127100 Sobic006G127100 Sobic004G345800--Sobic006G127100 Sobic004G345800--Sobic004G321800
Octagon: transcription factors


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