Gene annotation
Transcriptome id Sobic.006G244400.1
Synonym ENDO2, Sb06g031020
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
nuclease PA3, putative, expressed
UniProt C5Y9F6
Pfam PF02265
Panther DB PTHR33146 PTHR33146:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006308; DNA catabolic process GO:0004519endonuclease activity GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT1G68290 : endonuclease 2
RAP-DB (Rice) LOC_Os04g55850.1 : nuclease PA3, putative, expressed
MaizeGDB (Corn) Zm00025a009498
Brachypodium KQJ85028
Barley HORVU2Hr1G112830.6 , HORVU2Hr1G112830.11 , HORVU2Hr1G112830.12 , HORVU2Hr1G112580.11 , HORVU2Hr1G112580.10 , HORVU2Hr1G112580.12 , HORVU2Hr1G112830.1 , HORVU2Hr1G112830.3 , HORVU2Hr1G112830.2 , HORVU2Hr1G112830.5 , HORVU2Hr1G112830.7 , HORVU2Hr1G112830.8 , HORVU2Hr1G112580.5 , HORVU2Hr1G112580.4 , HORVU2Hr1G112580.7 , HORVU2Hr1G112580.6 , HORVU2Hr1G112580.1 , HORVU2Hr1G112580.3 , HORVU2Hr1G112580.2 , HORVU2Hr1G112580.9 , HORVU2Hr1G112580.8
Wheat TraesCS2B02G535500 , TraesCS3A02G044000 , TraesCS3A02G044000 , TraesCS3D02G036900 , TraesCS3B02G039600 , TraesCS2D02G507800 , TraesCS2D02G507700 , TraesCS2A02G507500 , TraesCS2A02G507400 , TraesCS2A02G507400 , TraesCS2B02G535400 , TraesCS3D02G036800 , TraesCS3A02G043900 , TraesCS3A02G043900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G512800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aconitate hydratase protein, putative, expressed K01681: ACO, aconitate hydratase
2 Sobic.010G206000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transmembrane amino acid transporter protein, putative, expressed -
3 Sobic.005G024900 major facilitator superfamily antiporter, putative, expressed -
4 Sobic.010G248900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@disease resistance protein RPM1, putative, expressed K13457: RPM1, disease resistance protein RPM1
5 Sobic.002G155400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@serine/threonine-protein kinase BRI1-like 1 precursor, putative, expressed -
6 Sobic.006G100332 - -
7 Sobic.002G409500 lipase precursor, putative, expressed -
8 Sobic.007G068100 aconitate hydratase protein, putative, expressed K01681: ACO, aconitate hydratase
9 Sobic.005G079900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@F-box domain containing protein, expressed -
10 Sobic.002G087800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@1-aminocyclopropane-1-carboxylate oxidase 2, putative, expressed -
11 Sobic.002G322900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@integral membrane protein DUF6 containing protein, expressed -
12 Sobic.001G305800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@U-box domain containing protein, expressed -
13 Sobic.003G149200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@late embryogenesis abundant protein, putative, expressed -
14 Sobic.009G234800 aspartic proteinase oryzasin-1 precursor, putative, expressed K08245: phytepsin
15 Sobic.001G132000 fumarylacetoacetase, putative, expressed K01557: acylpyruvate hydrolase
16 Sobic.006G030700 receptor kinase, putative, expressed -
17 Sobic.006G119200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@copper methylamine oxidase precursor, putative, expressed K00276: AOC3, AOC2, primary-amine oxidase
18 Sobic.010G020700 expressed protein -
19 Sobic.009G172500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@aminotransferase, putative, expressed K00827: alanine-glyoxylate transaminase / (R)-3-amino-2-methylpropionate-pyruvate transaminase
20 Sobic.004G246200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@dihydroorotate dihydrogenase protein, putative, expressed K00207: dihydropyrimidine dehydrogenase (NADP+)


Gene co-expression network
sample Sobic006G244400 Sobic006G244400 Sobic001G512800 Sobic001G512800 Sobic006G244400--Sobic001G512800 Sobic010G206000 Sobic010G206000 Sobic006G244400--Sobic010G206000 Sobic005G024900 Sobic005G024900 Sobic006G244400--Sobic005G024900 Sobic010G248900 Sobic010G248900 Sobic006G244400--Sobic010G248900 Sobic002G155400 Sobic002G155400 Sobic006G244400--Sobic002G155400 Sobic006G100332 Sobic006G100332 Sobic006G244400--Sobic006G100332 Sobic002G409500 Sobic002G409500 Sobic006G244400--Sobic002G409500 Sobic007G068100 Sobic007G068100 Sobic006G244400--Sobic007G068100 Sobic005G079900 Sobic005G079900 Sobic006G244400--Sobic005G079900 Sobic003G138200 Sobic003G138200 Sobic001G512800--Sobic003G138200 Sobic002G322900 Sobic002G322900 Sobic001G512800--Sobic002G322900 Sobic001G512800--Sobic010G206000 Sobic004G246200 Sobic004G246200 Sobic001G512800--Sobic004G246200 Sobic001G512800--Sobic002G409500 Sobic009G029600 Sobic009G029600 Sobic001G512800--Sobic009G029600 Sobic001G512800--Sobic010G248900 Sobic009G054500 Sobic009G054500 Sobic001G512800--Sobic009G054500 Sobic001G512800--Sobic005G079900 Sobic010G206000--Sobic001G512800 Sobic010G206000--Sobic004G246200 Sobic001G488500 Sobic001G488500 Sobic010G206000--Sobic001G488500 Sobic010G206000--Sobic002G322900 Sobic001G305800 Sobic001G305800 Sobic010G206000--Sobic001G305800 Sobic010G206000--Sobic002G155400 Sobic001G412700 Sobic001G412700 Sobic010G206000--Sobic001G412700 Sobic004G255000 Sobic004G255000 Sobic010G206000--Sobic004G255000 Sobic005G018500 Sobic005G018500 Sobic010G206000--Sobic005G018500 Sobic002G087800 Sobic002G087800 Sobic005G024900--Sobic002G087800 Sobic001G132000 Sobic001G132000 Sobic005G024900--Sobic001G132000 Sobic003G061400 Sobic003G061400 Sobic005G024900--Sobic003G061400 Sobic003G440900 Sobic003G440900 Sobic005G024900--Sobic003G440900 Sobic003G241500 Sobic003G241500 Sobic005G024900--Sobic003G241500 Sobic004G333200 Sobic004G333200 Sobic005G024900--Sobic004G333200 Sobic005G024900--Sobic006G244400 Sobic005G152200 Sobic005G152200 Sobic005G024900--Sobic005G152200 Sobic006G127100 Sobic006G127100 Sobic005G024900--Sobic006G127100 Sobic001G249300 Sobic001G249300 Sobic010G248900--Sobic001G249300 Sobic006G030700 Sobic006G030700 Sobic010G248900--Sobic006G030700 Sobic010G248900--Sobic001G512800 Sobic010G248900--Sobic005G018500 Sobic010G248900--Sobic009G054500 Sobic003G259200 Sobic003G259200 Sobic010G248900--Sobic003G259200 Sobic001G280200 Sobic001G280200 Sobic010G248900--Sobic001G280200 Sobic009G226300 Sobic009G226300 Sobic010G248900--Sobic009G226300 Sobic010G248900--Sobic006G100332 Sobic001G386400 Sobic001G386400 Sobic002G155400--Sobic001G386400 Sobic009G161401 Sobic009G161401 Sobic002G155400--Sobic009G161401 Sobic006G119200 Sobic006G119200 Sobic002G155400--Sobic006G119200 Sobic008G044000 Sobic008G044000 Sobic002G155400--Sobic008G044000 Sobic002G155400--Sobic002G322900 Sobic002G155400--Sobic010G206000 Sobic002G155400--Sobic001G512800 Sobic004G341200 Sobic004G341200 Sobic002G155400--Sobic004G341200 Sobic004G106900 Sobic004G106900 Sobic002G155400--Sobic004G106900 Sobic001G150600 Sobic001G150600 Sobic006G100332--Sobic001G150600 Sobic003G087200 Sobic003G087200 Sobic006G100332--Sobic003G087200 Sobic006G100332--Sobic009G226300 Sobic006G100332--Sobic009G054500 Sobic004G321800 Sobic004G321800 Sobic006G100332--Sobic004G321800 Sobic007G187300 Sobic007G187300 Sobic006G100332--Sobic007G187300 Sobic006G100332--Sobic006G030700 Sobic006G100332--Sobic001G249300 Sobic003G148800 Sobic003G148800 Sobic006G100332--Sobic003G148800 Sobic002G409500--Sobic009G029600 Sobic003G219600 Sobic003G219600 Sobic002G409500--Sobic003G219600 Sobic009G211400 Sobic009G211400 Sobic002G409500--Sobic009G211400 Sobic002G409500--Sobic001G280200 Sobic002G409500--Sobic001G249300 Sobic003G257100 Sobic003G257100 Sobic002G409500--Sobic003G257100 Sobic002G409500--Sobic004G255000 Sobic002G215800 Sobic002G215800 Sobic002G409500--Sobic002G215800 Sobic002G409500--Sobic003G259200 Sobic001G325200 Sobic001G325200 Sobic007G068100--Sobic001G325200 Sobic001G474500 Sobic001G474500 Sobic007G068100--Sobic001G474500 Sobic003G388251 Sobic003G388251 Sobic007G068100--Sobic003G388251 Sobic007G068100--Sobic003G148800 Sobic009G057300 Sobic009G057300 Sobic007G068100--Sobic009G057300 Sobic004G101900 Sobic004G101900 Sobic007G068100--Sobic004G101900 Sobic003G428400 Sobic003G428400 Sobic007G068100--Sobic003G428400 Sobic007G068100--Sobic009G226300 Sobic007G068100--Sobic004G321800 Sobic005G079900--Sobic004G101900 Sobic009G234800 Sobic009G234800 Sobic005G079900--Sobic009G234800 Sobic005G231900 Sobic005G231900 Sobic005G079900--Sobic005G231900 Sobic003G303300 Sobic003G303300 Sobic005G079900--Sobic003G303300 Sobic005G079900--Sobic001G488500 Sobic005G079900--Sobic001G512800 Sobic002G215700 Sobic002G215700 Sobic005G079900--Sobic002G215700 Sobic005G079900--Sobic007G068100 Sobic005G079900--Sobic004G246200
Octagon: transcription factors


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