Gene annotation
Transcriptome id Sobic.010G020700.6,Sobic.010G020700.5,Sobic.010G020700.3,Sobic.010G020700.9,Sobic.010G020700.4,Sobic.010G020700.8,Sobic.010G020700.1,Sobic.010G020700.7
Synonym
Functional annotation expressed protein
UniProt A0A1W0VR29 , A0A194YGU5 , A0A194YHV9 , A0A1W0VR33
Pfam PF12214
Panther DB PTHR14326 PTHR14326:SF16
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005874; microtubule GO:0005819spindle


Orthologs (automatic annotation)
TAIR AT4G22860 : Cell cycle regulated microtubule associated protein
RAP-DB (Rice) LOC_Os06g03980.1 : expressed protein
MaizeGDB (Corn) Zm00025a050176
Brachypodium PNT76591 , PNT76592 , KQK19710 , KQK19709 , PNT76588 , PNT76589
Barley HORVU7Hr1G012910.27 , HORVU7Hr1G012910.26 , HORVU7Hr1G012910.25 , HORVU7Hr1G012910.24 , HORVU7Hr1G012910.23 , HORVU7Hr1G012910.22 , HORVU7Hr1G012910.21 , HORVU7Hr1G012910.20 , HORVU7Hr1G012910.28 , HORVU7Hr1G012910.8 , HORVU7Hr1G012910.9 , HORVU7Hr1G012910.4 , HORVU7Hr1G012910.7 , HORVU7Hr1G012910.1 , HORVU7Hr1G012910.2 , HORVU7Hr1G012910.19 , HORVU7Hr1G012910.34 , HORVU7Hr1G012910.30 , HORVU7Hr1G012910.31 , HORVU7Hr1G012910.32 , HORVU7Hr1G012910.33 , HORVU7Hr1G012910.16 , HORVU7Hr1G012910.14 , HORVU7Hr1G012910.15 , HORVU7Hr1G012910.12 , HORVU7Hr1G012910.13 , HORVU7Hr1G012910.10 , HORVU7Hr1G012910.11 , HORVU7Hr1G012910.3
Wheat TraesCS4A02G422800 , TraesCS4A02G422800 , TraesCS7A02G066300 , TraesCS7A02G066300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G512800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aconitate hydratase protein, putative, expressed K01681: ACO, aconitate hydratase
2 Sobic.006G244400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@nuclease PA3, putative, expressed -
3 Sobic.005G079900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@F-box domain containing protein, expressed -
4 Sobic.009G212600 expressed protein K00294: 1-pyrroline-5-carboxylate dehydrogenase
5 Sobic.009G241000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@3 Ketoacyl CoA synthetase 11 KCS11 (At)(PubMedID : 27208977)@3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
6 Sobic.001G227800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@expressed protein -
7 Sobic.002G215700 similar to Aldehyde dehydrogenase(PubMedID : 29862293)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Aldehyde dehydrogenase B4(PubMedID : 26320239)@Zinc finger(C3H4-type Ring finger) family protein(PubMedID : 26320239)@a glutamate S-semialdehyde dehydrogenase(PubMedID : 26320239)@aldehyde dehydrogenase, putative, expressed K14085: aldehyde dehydrogenase family 7 member A1
8 Sobic.003G259200 -(PubMedID : 26976818)@uncharacterized kinase mug58, putative, expressed K15918: D-glycerate 3-kinase
9 Sobic.010G182500 ras-related protein, putative, expressed K07936: GTP-binding nuclear protein Ran
10 Sobic.001G274800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@oxidoreductase, aldo/keto reductase family protein, putative, expressed -
11 Sobic.006G100332 - -
12 Sobic.002G409500 lipase precursor, putative, expressed -
13 Sobic.003G084000 transporter family protein, putative, expressed -
14 Sobic.004G032800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CGMC_MAPKCMGC_2.7 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
15 Sobic.003G138200 expressed protein -
16 Sobic.009G054500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@lipase, putative, expressed -
17 Sobic.003G304200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@phospholipase, patatin family, putative, expressed K14674: TAG lipase / steryl ester hydrolase / phospholipase A2 / LPA acyltransferase
18 Sobic.004G246200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@dihydroorotate dihydrogenase protein, putative, expressed K00207: dihydropyrimidine dehydrogenase (NADP+)
19 Sobic.007G092900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@cytochrome P450, putative, expressed -
20 Sobic.004G206401 - -


Gene co-expression network
sample Sobic010G020700 Sobic010G020700 Sobic001G512800 Sobic001G512800 Sobic010G020700--Sobic001G512800 Sobic006G244400 Sobic006G244400 Sobic010G020700--Sobic006G244400 Sobic005G079900 Sobic005G079900 Sobic010G020700--Sobic005G079900 Sobic009G212600 Sobic009G212600 Sobic010G020700--Sobic009G212600 Sobic009G241000 Sobic009G241000 Sobic010G020700--Sobic009G241000 Sobic001G227800 Sobic001G227800 Sobic010G020700--Sobic001G227800 Sobic002G215700 Sobic002G215700 Sobic010G020700--Sobic002G215700 Sobic003G259200 Sobic003G259200 Sobic010G020700--Sobic003G259200 Sobic010G182500 Sobic010G182500 Sobic010G020700--Sobic010G182500 Sobic003G138200 Sobic003G138200 Sobic001G512800--Sobic003G138200 Sobic002G322900 Sobic002G322900 Sobic001G512800--Sobic002G322900 Sobic010G206000 Sobic010G206000 Sobic001G512800--Sobic010G206000 Sobic004G246200 Sobic004G246200 Sobic001G512800--Sobic004G246200 Sobic002G409500 Sobic002G409500 Sobic001G512800--Sobic002G409500 Sobic009G029600 Sobic009G029600 Sobic001G512800--Sobic009G029600 Sobic010G248900 Sobic010G248900 Sobic001G512800--Sobic010G248900 Sobic009G054500 Sobic009G054500 Sobic001G512800--Sobic009G054500 Sobic001G512800--Sobic005G079900 Sobic006G244400--Sobic001G512800 Sobic006G244400--Sobic010G206000 Sobic005G024900 Sobic005G024900 Sobic006G244400--Sobic005G024900 Sobic006G244400--Sobic010G248900 Sobic002G155400 Sobic002G155400 Sobic006G244400--Sobic002G155400 Sobic006G100332 Sobic006G100332 Sobic006G244400--Sobic006G100332 Sobic006G244400--Sobic002G409500 Sobic007G068100 Sobic007G068100 Sobic006G244400--Sobic007G068100 Sobic006G244400--Sobic005G079900 Sobic004G101900 Sobic004G101900 Sobic005G079900--Sobic004G101900 Sobic009G234800 Sobic009G234800 Sobic005G079900--Sobic009G234800 Sobic005G231900 Sobic005G231900 Sobic005G079900--Sobic005G231900 Sobic003G303300 Sobic003G303300 Sobic005G079900--Sobic003G303300 Sobic001G488500 Sobic001G488500 Sobic005G079900--Sobic001G488500 Sobic005G079900--Sobic001G512800 Sobic005G079900--Sobic002G215700 Sobic005G079900--Sobic007G068100 Sobic005G079900--Sobic004G246200 Sobic003G084000 Sobic003G084000 Sobic009G212600--Sobic003G084000 Sobic005G197100 Sobic005G197100 Sobic009G212600--Sobic005G197100 Sobic004G032800 Sobic004G032800 Sobic009G212600--Sobic004G032800 Sobic009G166600 Sobic009G166600 Sobic009G212600--Sobic009G166600 Sobic003G304200 Sobic003G304200 Sobic009G212600--Sobic003G304200 Sobic001G130200 Sobic001G130200 Sobic009G212600--Sobic001G130200 Sobic004G096700 Sobic004G096700 Sobic009G212600--Sobic004G096700 Sobic003G226200 Sobic003G226200 Sobic009G212600--Sobic003G226200 Sobic006G139000 Sobic006G139000 Sobic009G212600--Sobic006G139000 Sobic004G206401 Sobic004G206401 Sobic009G241000--Sobic004G206401 Sobic002G265300 Sobic002G265300 Sobic009G241000--Sobic002G265300 Sobic004G198800 Sobic004G198800 Sobic009G241000--Sobic004G198800 Sobic003G377000 Sobic003G377000 Sobic009G241000--Sobic003G377000 Sobic002G139600 Sobic002G139600 Sobic009G241000--Sobic002G139600 Sobic002G431000 Sobic002G431000 Sobic009G241000--Sobic002G431000 Sobic009G241000--Sobic001G512800 Sobic001G274800 Sobic001G274800 Sobic009G241000--Sobic001G274800 Sobic009G241000--Sobic004G096700 Sobic001G227800--Sobic002G215700 Sobic009G226300 Sobic009G226300 Sobic001G227800--Sobic009G226300 Sobic001G227800--Sobic009G054500 Sobic007G187300 Sobic007G187300 Sobic001G227800--Sobic007G187300 Sobic001G227800--Sobic003G259200 Sobic002G304000 Sobic002G304000 Sobic001G227800--Sobic002G304000 Sobic005G018500 Sobic005G018500 Sobic001G227800--Sobic005G018500 Sobic001G227800--Sobic006G100332 Sobic003G219600 Sobic003G219600 Sobic001G227800--Sobic003G219600 Sobic002G215700--Sobic001G227800 Sobic002G215700--Sobic009G054500 Sobic002G215700--Sobic009G226300 Sobic002G215700--Sobic004G101900 Sobic002G215700--Sobic002G304000 Sobic002G215700--Sobic006G100332 Sobic002G215700--Sobic003G138200 Sobic003G148800 Sobic003G148800 Sobic002G215700--Sobic003G148800 Sobic002G215700--Sobic005G018500 Sobic003G259200--Sobic009G054500 Sobic003G259200--Sobic005G018500 Sobic001G249300 Sobic001G249300 Sobic003G259200--Sobic001G249300 Sobic003G259200--Sobic003G219600 Sobic004G255000 Sobic004G255000 Sobic003G259200--Sobic004G255000 Sobic003G259200--Sobic009G226300 Sobic003G259200--Sobic009G029600 Sobic005G151700 Sobic005G151700 Sobic003G259200--Sobic005G151700 Sobic003G259200--Sobic007G187300 Sobic010G182500--Sobic009G226300 Sobic010G182500--Sobic007G187300 Sobic010G182500--Sobic009G054500 Sobic010G182500--Sobic001G249300 Sobic010G182500--Sobic005G018500 Sobic010G182500--Sobic006G100332 Sobic010G182500--Sobic003G138200 Sobic010G182500--Sobic003G259200 Sobic004G260000 Sobic004G260000 Sobic010G182500--Sobic004G260000
Octagon: transcription factors


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