Gene annotation
Transcriptome id Sobic.009G241000.1
Synonym KCS11, Sb09g029260,
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
3 Ketoacyl CoA synthetase 11 KCS11 (At) (PubMedID : 27208977)
3-ketoacyl-CoA synthase, putative, expressed
UniProt C5YW23
Pfam PF08541 PF08392
Panther DB PTHR31561 PTHR31561:SF19
NCBI CDD -
KEGG Orthology K15397; 3-ketoacyl-CoA synthase
Gene Ontology GO:0016747; transferase activity, transferring acyl groups other than amino-acyl groups GO:0008610lipid biosynthetic process GO:0016020membrane GO:0006633fatty acid biosynthetic process


Orthologs (automatic annotation)
TAIR AT2G26640 : 3-ketoacyl-CoA synthase 11
RAP-DB (Rice) LOC_Os05g49900.1 : 3-ketoacyl-CoA synthase, putative, expressed
MaizeGDB (Corn) Zm00025a051234 , Zm00025a000930 , Zm00025a020257 , Zm00025a036645 , Zm00025a001551 , Zm00025a042702 , Zm00025a013566 , Zm00025a029505 , Zm00025a044614 , Zm00025a053041 , Zm00025a044659 , Zm00025a006916 , Zm00025a003809 , Zm00025a032652 , Zm00025a017777 , Zm00025a052892 , Zm00025a001341 , Zm00025a021922 , Zm00025a000774 , Zm00025a025466
Brachypodium PNT75706 , KQJ89024 , KQK04750 , KQJ89941 , KQJ96727 , PNT76138 , KQK18680 , PNT67097 , PNT77754 , PNT77755 , KQK22844 , KQJ88016 , KQK01599 , KQK17805 , KQK23304 , KQK23503
Barley HORVU6Hr1G073300.1 , HORVU4Hr1G076940.2 , HORVU4Hr1G067340.4 , HORVU1Hr1G089710.1 , HORVU1Hr1G089710.2 , HORVU1Hr1G089710.3 , HORVU4Hr1G073840.2 , HORVU4Hr1G073840.3 , HORVU4Hr1G073840.4 , HORVU4Hr1G073840.5 , HORVU4Hr1G073840.6 , HORVU4Hr1G073840.8 , HORVU1Hr1G086760.1 , HORVU7Hr1G042070.2 , HORVU7Hr1G042070.3 , HORVU7Hr1G042070.1 , HORVU4Hr1G063420.4 , HORVU7Hr1G084610.10 , HORVU7Hr1G084610.11 , HORVU4Hr1G067340.2 , HORVU4Hr1G067340.3 , HORVU4Hr1G067340.1 , HORVU7Hr1G084610.1 , HORVU7Hr1G084610.2 , HORVU7Hr1G084610.3 , HORVU7Hr1G084610.4 , HORVU7Hr1G084610.5 , HORVU7Hr1G084610.6 , HORVU7Hr1G084610.7 , HORVU7Hr1G084610.8 , HORVU7Hr1G084610.9 , HORVU1Hr1G090730.1 , HORVU4Hr1G076940.3 , HORVU4Hr1G063420.5 , HORVU4Hr1G063420.3 , HORVU4Hr1G063420.2 , HORVU4Hr1G063420.1
Wheat TraesCS4A02G065300 , TraesCS6D02G071600 , TraesCS4D02G242200 , TraesCS6A02G073300 , TraesCS4D02G277300 , TraesCS6B02G473900 , TraesCS6B02G098300 , TraesCS4D02G148300 , TraesCS4B02G297500 , TraesCS4A02G025300 , TraesCS4A02G007400 , TraesCS4B02G278800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G206401 - -
2 Sobic.002G265300 acyl-coenzyme A thioesterase 10, mitochondrial precursor, putative, expressed K17361: acyl-coenzyme A thioesterase 9
3 Sobic.004G198800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@expressed protein K01113: alkaline phosphatase D
4 Sobic.003G377000 powdery mildew resistant protein 5, putative, expressed -
5 Sobic.002G139600 2-phosphoglycerate kinase-related, putative, expressed -
6 Sobic.002G431000 transporter, putative, expressed -
7 Sobic.001G512800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aconitate hydratase protein, putative, expressed K01681: ACO, aconitate hydratase
8 Sobic.001G274800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@oxidoreductase, aldo/keto reductase family protein, putative, expressed -
9 Sobic.004G096700 xaa-Pro dipeptidase, putative, expressed K14213: Xaa-Pro dipeptidase
10 Sobic.010G182500 ras-related protein, putative, expressed K07936: GTP-binding nuclear protein Ran
11 Sobic.002G295700 transporter family protein, putative, expressed -
12 Sobic.009G235600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transporter family protein, putative, expressed K08145: SLC2A8, MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 8
13 Sobic.006G244400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@nuclease PA3, putative, expressed -
14 Sobic.010G184300 glycosyltransferase family protein, putative, expressed K00771: protein xylosyltransferase
15 Sobic.006G132600 - -
16 Sobic.002G266200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
17 Sobic.010G020700 expressed protein -
18 Sobic.004G192800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@mitochondrial prohibitin complex protein 1, putative, expressed K17080: prohibitin 1
19 Sobic.K043400 dnaJ homolog subfamily C member, putative, expressed K09523: DnaJ homolog subfamily C member 3
20 Sobic.008G015600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@CAMK_CAMK_like.42 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase


Gene co-expression network
sample Sobic009G241000 Sobic009G241000 Sobic004G206401 Sobic004G206401 Sobic009G241000--Sobic004G206401 Sobic002G265300 Sobic002G265300 Sobic009G241000--Sobic002G265300 Sobic004G198800 Sobic004G198800 Sobic009G241000--Sobic004G198800 Sobic003G377000 Sobic003G377000 Sobic009G241000--Sobic003G377000 Sobic002G139600 Sobic002G139600 Sobic009G241000--Sobic002G139600 Sobic002G431000 Sobic002G431000 Sobic009G241000--Sobic002G431000 Sobic001G512800 Sobic001G512800 Sobic009G241000--Sobic001G512800 Sobic001G274800 Sobic001G274800 Sobic009G241000--Sobic001G274800 Sobic004G096700 Sobic004G096700 Sobic009G241000--Sobic004G096700 Sobic004G206401--Sobic009G241000 Sobic004G206401--Sobic001G274800 Sobic004G043001 Sobic004G043001 Sobic004G206401--Sobic004G043001 Sobic003G184900 Sobic003G184900 Sobic004G206401--Sobic003G184900 Sobic003G105800 Sobic003G105800 Sobic004G206401--Sobic003G105800 Sobic008G079300 Sobic008G079300 Sobic004G206401--Sobic008G079300 Sobic004G206401--Sobic002G265300 Sobic010G182500 Sobic010G182500 Sobic004G206401--Sobic010G182500 Sobic007G186200 Sobic007G186200 Sobic004G206401--Sobic007G186200 Sobic002G265300--Sobic003G377000 Sobic002G007800 Sobic002G007800 Sobic002G265300--Sobic002G007800 Sobic002G265300--Sobic004G096700 Sobic002G265300--Sobic002G431000 Sobic002G426300 Sobic002G426300 Sobic002G265300--Sobic002G426300 Sobic010G171000 Sobic010G171000 Sobic002G265300--Sobic010G171000 Sobic002G265300--Sobic009G241000 Sobic010G184300 Sobic010G184300 Sobic002G265300--Sobic010G184300 Sobic009G025200 Sobic009G025200 Sobic002G265300--Sobic009G025200 Sobic004G198800--Sobic002G139600 Sobic003G308800 Sobic003G308800 Sobic004G198800--Sobic003G308800 Sobic006G166400 Sobic006G166400 Sobic004G198800--Sobic006G166400 Sobic004G198800--Sobic003G377000 Sobic004G198800--Sobic002G007800 Sobic004G256700 Sobic004G256700 Sobic004G198800--Sobic004G256700 Sobic001G387200 Sobic001G387200 Sobic004G198800--Sobic001G387200 Sobic006G120900 Sobic006G120900 Sobic004G198800--Sobic006G120900 Sobic003G129900 Sobic003G129900 Sobic004G198800--Sobic003G129900 Sobic003G377000--Sobic002G265300 Sobic003G377000--Sobic002G431000 Sobic003G377000--Sobic002G139600 Sobic005G177700 Sobic005G177700 Sobic003G377000--Sobic005G177700 Sobic007G026800 Sobic007G026800 Sobic003G377000--Sobic007G026800 Sobic003G377000--Sobic010G184300 Sobic004G093600 Sobic004G093600 Sobic003G377000--Sobic004G093600 Sobic003G377000--Sobic004G096700 SobicK043400 SobicK043400 Sobic003G377000--SobicK043400 Sobic002G139600--Sobic003G377000 Sobic002G139600--Sobic002G007800 Sobic002G139600--Sobic002G431000 Sobic002G139600--Sobic004G198800 Sobic002G160100 Sobic002G160100 Sobic002G139600--Sobic002G160100 Sobic001G179800 Sobic001G179800 Sobic002G139600--Sobic001G179800 Sobic004G192800 Sobic004G192800 Sobic002G139600--Sobic004G192800 Sobic002G139600--SobicK043400 Sobic002G139600--Sobic003G308800 Sobic002G431000--Sobic010G184300 Sobic002G295700 Sobic002G295700 Sobic002G431000--Sobic002G295700 Sobic002G431000--Sobic003G377000 Sobic001G457700 Sobic001G457700 Sobic002G431000--Sobic001G457700 Sobic004G236200 Sobic004G236200 Sobic002G431000--Sobic004G236200 Sobic002G431000--Sobic005G177700 Sobic004G112900 Sobic004G112900 Sobic002G431000--Sobic004G112900 Sobic007G056100 Sobic007G056100 Sobic002G431000--Sobic007G056100 Sobic010G064600 Sobic010G064600 Sobic002G431000--Sobic010G064600 Sobic003G138200 Sobic003G138200 Sobic001G512800--Sobic003G138200 Sobic002G322900 Sobic002G322900 Sobic001G512800--Sobic002G322900 Sobic010G206000 Sobic010G206000 Sobic001G512800--Sobic010G206000 Sobic004G246200 Sobic004G246200 Sobic001G512800--Sobic004G246200 Sobic002G409500 Sobic002G409500 Sobic001G512800--Sobic002G409500 Sobic009G029600 Sobic009G029600 Sobic001G512800--Sobic009G029600 Sobic010G248900 Sobic010G248900 Sobic001G512800--Sobic010G248900 Sobic009G054500 Sobic009G054500 Sobic001G512800--Sobic009G054500 Sobic005G079900 Sobic005G079900 Sobic001G512800--Sobic005G079900 Sobic001G274800--Sobic003G184900 Sobic006G100332 Sobic006G100332 Sobic001G274800--Sobic006G100332 Sobic004G321800 Sobic004G321800 Sobic001G274800--Sobic004G321800 Sobic002G324000 Sobic002G324000 Sobic001G274800--Sobic002G324000 Sobic001G274800--Sobic004G206401 Sobic001G274800--Sobic003G105800 Sobic007G068100 Sobic007G068100 Sobic001G274800--Sobic007G068100 Sobic001G274800--Sobic007G186200 Sobic001G182500 Sobic001G182500 Sobic001G274800--Sobic001G182500 Sobic004G096700--Sobic002G295700 Sobic001G399700 Sobic001G399700 Sobic004G096700--Sobic001G399700 Sobic004G096700--SobicK043400 Sobic002G301100 Sobic002G301100 Sobic004G096700--Sobic002G301100 Sobic009G054600 Sobic009G054600 Sobic004G096700--Sobic009G054600 Sobic010G133400 Sobic010G133400 Sobic004G096700--Sobic010G133400 Sobic001G501900 Sobic001G501900 Sobic004G096700--Sobic001G501900 Sobic004G254800 Sobic004G254800 Sobic004G096700--Sobic004G254800 Sobic004G096700--Sobic010G171000
Octagon: transcription factors


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