Gene annotation
Transcriptome id Sobic.004G192800.1
Synonym ATPHB3, Sb04g024070, PHB3
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
mitochondrial prohibitin complex protein 1, putative, expressed
UniProt C5XVS3
Pfam PF01145
Panther DB PTHR23222 PTHR23222:SF3
NCBI CDD KOG3083; Prohibitin
KEGG Orthology K17080; prohibitin 1
Gene Ontology GO:0016020; membrane


Orthologs (automatic annotation)
TAIR AT5G40770 : prohibitin 3
RAP-DB (Rice) LOC_Os02g37000.1 : mitochondrial prohibitin complex protein 1, putative, expressed
MaizeGDB (Corn) Zm00025a020835 , Zm00025a056226
Brachypodium KQJ83000 , KQK00047
Barley HORVU6Hr1G047300.2 , HORVU6Hr1G047300.1
Wheat TraesCS6A02G198500 , TraesCS6D02G185000
Populus -


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cDNA sequences
Sobic.004G192800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G431000 transporter, putative, expressed -
2 Sobic.002G139600 2-phosphoglycerate kinase-related, putative, expressed -
3 Sobic.009G088800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@aminotransferase domain containing protein, putative, expressed K18482: 4-amino-4-deoxychorismate lyase
4 Sobic.005G044300 exo70 exocyst complex subunit, putative, expressed K07195: EXOC7, exocyst complex component 7
5 Sobic.001G057600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@stem-specific protein TSJT1, putative, expressed -
6 Sobic.004G159000 cytochrome b-c1 complex subunit Rieske, mitochondrial precursor, putative, expressed K00411: UQCRFS1, RIP1, ubiquinol-cytochrome c reductase iron-sulfur subunit
7 Sobic.001G118300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@GLTP domain containing protein, putative, expressed -
8 Sobic.003G129900 dehydrogenase, putative, expressed K00030: isocitrate dehydrogenase (NAD+)
9 Sobic.003G196600 expressed protein -
10 Sobic.002G295700 transporter family protein, putative, expressed -
11 Sobic.001G443200 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3
12 Sobic.K043400 dnaJ homolog subfamily C member, putative, expressed K09523: DnaJ homolog subfamily C member 3
13 Sobic.005G019100 TRAF-type zinc finger family protein, expressed -
14 Sobic.004G296700 ethylene-responsive element-binding protein, putative, expressed -
15 Sobic.004G198800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@expressed protein K01113: alkaline phosphatase D
16 Sobic.009G050500 nifU, putative, expressed -
17 Sobic.003G377000 powdery mildew resistant protein 5, putative, expressed -
18 Sobic.004G186300 protein phosphotase protein, putative, expressed -
19 Sobic.002G366800 RNA recognition motif containing protein, putative, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
20 Sobic.004G256700 ZAC, putative, expressed K12486: stromal membrane-associated protein


Gene co-expression network
sample Sobic004G192800 Sobic004G192800 Sobic002G431000 Sobic002G431000 Sobic004G192800--Sobic002G431000 Sobic002G139600 Sobic002G139600 Sobic004G192800--Sobic002G139600 Sobic009G088800 Sobic009G088800 Sobic004G192800--Sobic009G088800 Sobic005G044300 Sobic005G044300 Sobic004G192800--Sobic005G044300 Sobic001G057600 Sobic001G057600 Sobic004G192800--Sobic001G057600 Sobic004G159000 Sobic004G159000 Sobic004G192800--Sobic004G159000 Sobic001G118300 Sobic001G118300 Sobic004G192800--Sobic001G118300 Sobic003G129900 Sobic003G129900 Sobic004G192800--Sobic003G129900 Sobic003G196600 Sobic003G196600 Sobic004G192800--Sobic003G196600 Sobic010G184300 Sobic010G184300 Sobic002G431000--Sobic010G184300 Sobic002G295700 Sobic002G295700 Sobic002G431000--Sobic002G295700 Sobic003G377000 Sobic003G377000 Sobic002G431000--Sobic003G377000 Sobic001G457700 Sobic001G457700 Sobic002G431000--Sobic001G457700 Sobic004G236200 Sobic004G236200 Sobic002G431000--Sobic004G236200 Sobic005G177700 Sobic005G177700 Sobic002G431000--Sobic005G177700 Sobic004G112900 Sobic004G112900 Sobic002G431000--Sobic004G112900 Sobic007G056100 Sobic007G056100 Sobic002G431000--Sobic007G056100 Sobic010G064600 Sobic010G064600 Sobic002G431000--Sobic010G064600 Sobic002G139600--Sobic003G377000 Sobic002G007800 Sobic002G007800 Sobic002G139600--Sobic002G007800 Sobic002G139600--Sobic002G431000 Sobic004G198800 Sobic004G198800 Sobic002G139600--Sobic004G198800 Sobic002G160100 Sobic002G160100 Sobic002G139600--Sobic002G160100 Sobic001G179800 Sobic001G179800 Sobic002G139600--Sobic001G179800 Sobic002G139600--Sobic004G192800 SobicK043400 SobicK043400 Sobic002G139600--SobicK043400 Sobic003G308800 Sobic003G308800 Sobic002G139600--Sobic003G308800 Sobic009G088800--Sobic001G057600 Sobic009G088800--Sobic005G044300 Sobic009G088800--Sobic004G192800 Sobic009G088800--Sobic001G118300 Sobic004G256700 Sobic004G256700 Sobic009G088800--Sobic004G256700 Sobic009G088800--Sobic002G139600 Sobic009G088800--Sobic003G129900 Sobic002G423000 Sobic002G423000 Sobic009G088800--Sobic002G423000 Sobic003G273900 Sobic003G273900 Sobic009G088800--Sobic003G273900 Sobic008G018300 Sobic008G018300 Sobic005G044300--Sobic008G018300 Sobic005G044300--Sobic004G159000 Sobic001G387200 Sobic001G387200 Sobic005G044300--Sobic001G387200 Sobic004G039400 Sobic004G039400 Sobic005G044300--Sobic004G039400 Sobic002G420600 Sobic002G420600 Sobic005G044300--Sobic002G420600 Sobic004G353500 Sobic004G353500 Sobic005G044300--Sobic004G353500 Sobic003G335300 Sobic003G335300 Sobic005G044300--Sobic003G335300 Sobic003G016300 Sobic003G016300 Sobic005G044300--Sobic003G016300 Sobic001G038000 Sobic001G038000 Sobic005G044300--Sobic001G038000 Sobic001G057600--Sobic009G088800 Sobic006G118400 Sobic006G118400 Sobic001G057600--Sobic006G118400 Sobic004G186300 Sobic004G186300 Sobic001G057600--Sobic004G186300 Sobic001G057600--Sobic001G118300 Sobic001G057600--Sobic004G192800 Sobic005G019100 Sobic005G019100 Sobic001G057600--Sobic005G019100 Sobic009G050000 Sobic009G050000 Sobic001G057600--Sobic009G050000 Sobic001G057600--Sobic005G044300 Sobic008G129000 Sobic008G129000 Sobic001G057600--Sobic008G129000 Sobic007G013900 Sobic007G013900 Sobic004G159000--Sobic007G013900 Sobic004G344800 Sobic004G344800 Sobic004G159000--Sobic004G344800 Sobic002G262200 Sobic002G262200 Sobic004G159000--Sobic002G262200 Sobic004G030000 Sobic004G030000 Sobic004G159000--Sobic004G030000 Sobic004G159000--Sobic003G196600 Sobic002G090700 Sobic002G090700 Sobic004G159000--Sobic002G090700 Sobic003G152900 Sobic003G152900 Sobic004G159000--Sobic003G152900 Sobic002G260200 Sobic002G260200 Sobic004G159000--Sobic002G260200 Sobic010G007400 Sobic010G007400 Sobic004G159000--Sobic010G007400 Sobic001G118300--Sobic005G019100 Sobic006G039600 Sobic006G039600 Sobic001G118300--Sobic006G039600 Sobic001G118300--Sobic004G256700 Sobic010G262300 Sobic010G262300 Sobic001G118300--Sobic010G262300 Sobic001G118300--Sobic003G196600 Sobic010G031000 Sobic010G031000 Sobic001G118300--Sobic010G031000 Sobic004G159400 Sobic004G159400 Sobic001G118300--Sobic004G159400 Sobic001G118300--Sobic004G159000 Sobic003G273000 Sobic003G273000 Sobic001G118300--Sobic003G273000 Sobic003G129900--Sobic001G387200 Sobic004G093600 Sobic004G093600 Sobic003G129900--Sobic004G093600 Sobic006G120900 Sobic006G120900 Sobic003G129900--Sobic006G120900 Sobic003G129900--Sobic005G019100 Sobic004G173700 Sobic004G173700 Sobic003G129900--Sobic004G173700 Sobic003G129900--Sobic004G256700 Sobic003G129900--Sobic002G420600 Sobic003G034900 Sobic003G034900 Sobic003G129900--Sobic003G034900 Sobic001G518500 Sobic001G518500 Sobic003G129900--Sobic001G518500 Sobic003G196600--Sobic004G159000 Sobic003G196600--Sobic004G256700 Sobic003G340700 Sobic003G340700 Sobic003G196600--Sobic003G340700 Sobic009G112900 Sobic009G112900 Sobic003G196600--Sobic009G112900 Sobic003G196600--Sobic004G030000 Sobic003G196600--Sobic004G039400 Sobic003G196600--Sobic001G518500 Sobic003G196600--Sobic005G019100 Sobic008G175100 Sobic008G175100 Sobic003G196600--Sobic008G175100
Octagon: transcription factors


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