Gene annotation
Transcriptome id Sobic.009G088800.1
Synonym Sb09g008180
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)" (PubMedID : 27586543)
aminotransferase domain containing protein, putative, expressed
UniProt C5YVA1
Pfam PF01063
Panther DB PTHR11825 PTHR11825:SF47
NCBI CDD KOG0975; Branched chain aminotransferase BCAT1, pyridoxal phosphate enzymes type IV superfamily
KEGG Orthology K18482; 4-amino-4-deoxychorismate lyase
Gene Ontology GO:0008152; metabolic process GO:0003824catalytic activity


Orthologs (automatic annotation)
TAIR AT5G57850 : D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein
RAP-DB (Rice) LOC_Os05g15530.1 : aminotransferase domain containing protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G057600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@stem-specific protein TSJT1, putative, expressed -
2 Sobic.005G044300 exo70 exocyst complex subunit, putative, expressed K07195: EXOC7, exocyst complex component 7
3 Sobic.004G192800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@mitochondrial prohibitin complex protein 1, putative, expressed K17080: prohibitin 1
4 Sobic.001G118300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@GLTP domain containing protein, putative, expressed -
5 Sobic.004G256700 ZAC, putative, expressed K12486: stromal membrane-associated protein
6 Sobic.002G139600 2-phosphoglycerate kinase-related, putative, expressed -
7 Sobic.003G129900 dehydrogenase, putative, expressed K00030: isocitrate dehydrogenase (NAD+)
8 Sobic.002G423000 zinc finger family protein, putative, expressed -
9 Sobic.003G273900 mitochondrial carrier protein, putative, expressed -
10 Sobic.004G198800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@expressed protein K01113: alkaline phosphatase D
11 Sobic.001G387200 expressed protein -
12 Sobic.005G019100 TRAF-type zinc finger family protein, expressed -
13 Sobic.004G296700 ethylene-responsive element-binding protein, putative, expressed -
14 Sobic.009G050500 nifU, putative, expressed -
15 Sobic.004G173700 SLL1 protein, putative, expressed -
16 Sobic.004G093600 2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed K00627: DLAT, aceF, pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase)
17 Sobic.003G196600 expressed protein -
18 Sobic.002G034700 similar to Putative uncharacterized protein(PubMedID : 29862293)@CAMK_KIN1/SNF1/Nim1_like.28 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
19 Sobic.003G137600 CHIT10 - Chitinase family protein precursor, expressed -
20 Sobic.010G043200 OsMAPK6(Ortholog in rice:Liu et al. (2015))(PubMedID : 31659928)@CGMC_MAPKCMGC_2_ERK.12 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K14512: mitogen-activated protein kinase 6


Gene co-expression network
sample Sobic009G088800 Sobic009G088800 Sobic001G057600 Sobic001G057600 Sobic009G088800--Sobic001G057600 Sobic005G044300 Sobic005G044300 Sobic009G088800--Sobic005G044300 Sobic004G192800 Sobic004G192800 Sobic009G088800--Sobic004G192800 Sobic001G118300 Sobic001G118300 Sobic009G088800--Sobic001G118300 Sobic004G256700 Sobic004G256700 Sobic009G088800--Sobic004G256700 Sobic002G139600 Sobic002G139600 Sobic009G088800--Sobic002G139600 Sobic003G129900 Sobic003G129900 Sobic009G088800--Sobic003G129900 Sobic002G423000 Sobic002G423000 Sobic009G088800--Sobic002G423000 Sobic003G273900 Sobic003G273900 Sobic009G088800--Sobic003G273900 Sobic001G057600--Sobic009G088800 Sobic006G118400 Sobic006G118400 Sobic001G057600--Sobic006G118400 Sobic004G186300 Sobic004G186300 Sobic001G057600--Sobic004G186300 Sobic001G057600--Sobic001G118300 Sobic001G057600--Sobic004G192800 Sobic005G019100 Sobic005G019100 Sobic001G057600--Sobic005G019100 Sobic009G050000 Sobic009G050000 Sobic001G057600--Sobic009G050000 Sobic001G057600--Sobic005G044300 Sobic008G129000 Sobic008G129000 Sobic001G057600--Sobic008G129000 Sobic008G018300 Sobic008G018300 Sobic005G044300--Sobic008G018300 Sobic004G159000 Sobic004G159000 Sobic005G044300--Sobic004G159000 Sobic001G387200 Sobic001G387200 Sobic005G044300--Sobic001G387200 Sobic004G039400 Sobic004G039400 Sobic005G044300--Sobic004G039400 Sobic002G420600 Sobic002G420600 Sobic005G044300--Sobic002G420600 Sobic004G353500 Sobic004G353500 Sobic005G044300--Sobic004G353500 Sobic003G335300 Sobic003G335300 Sobic005G044300--Sobic003G335300 Sobic003G016300 Sobic003G016300 Sobic005G044300--Sobic003G016300 Sobic001G038000 Sobic001G038000 Sobic005G044300--Sobic001G038000 Sobic002G431000 Sobic002G431000 Sobic004G192800--Sobic002G431000 Sobic004G192800--Sobic002G139600 Sobic004G192800--Sobic009G088800 Sobic004G192800--Sobic005G044300 Sobic004G192800--Sobic001G057600 Sobic004G192800--Sobic004G159000 Sobic004G192800--Sobic001G118300 Sobic004G192800--Sobic003G129900 Sobic003G196600 Sobic003G196600 Sobic004G192800--Sobic003G196600 Sobic001G118300--Sobic005G019100 Sobic006G039600 Sobic006G039600 Sobic001G118300--Sobic006G039600 Sobic001G118300--Sobic004G256700 Sobic010G262300 Sobic010G262300 Sobic001G118300--Sobic010G262300 Sobic001G118300--Sobic003G196600 Sobic010G031000 Sobic010G031000 Sobic001G118300--Sobic010G031000 Sobic004G159400 Sobic004G159400 Sobic001G118300--Sobic004G159400 Sobic001G118300--Sobic004G159000 Sobic003G273000 Sobic003G273000 Sobic001G118300--Sobic003G273000 Sobic004G256700--Sobic003G129900 Sobic004G256700--Sobic005G019100 Sobic004G256700--Sobic001G387200 Sobic006G120900 Sobic006G120900 Sobic004G256700--Sobic006G120900 Sobic004G093600 Sobic004G093600 Sobic004G256700--Sobic004G093600 Sobic004G256700--Sobic003G196600 Sobic003G274200 Sobic003G274200 Sobic004G256700--Sobic003G274200 Sobic004G173700 Sobic004G173700 Sobic004G256700--Sobic004G173700 Sobic001G518500 Sobic001G518500 Sobic004G256700--Sobic001G518500 Sobic003G377000 Sobic003G377000 Sobic002G139600--Sobic003G377000 Sobic002G007800 Sobic002G007800 Sobic002G139600--Sobic002G007800 Sobic002G139600--Sobic002G431000 Sobic004G198800 Sobic004G198800 Sobic002G139600--Sobic004G198800 Sobic002G160100 Sobic002G160100 Sobic002G139600--Sobic002G160100 Sobic001G179800 Sobic001G179800 Sobic002G139600--Sobic001G179800 Sobic002G139600--Sobic004G192800 SobicK043400 SobicK043400 Sobic002G139600--SobicK043400 Sobic003G308800 Sobic003G308800 Sobic002G139600--Sobic003G308800 Sobic003G129900--Sobic001G387200 Sobic003G129900--Sobic004G093600 Sobic003G129900--Sobic006G120900 Sobic003G129900--Sobic005G019100 Sobic003G129900--Sobic004G173700 Sobic003G129900--Sobic004G256700 Sobic003G129900--Sobic002G420600 Sobic003G034900 Sobic003G034900 Sobic003G129900--Sobic003G034900 Sobic003G129900--Sobic001G518500 Sobic002G423000--Sobic005G044300 Sobic002G423000--Sobic001G118300 Sobic002G423000--Sobic009G088800 Sobic007G212100 Sobic007G212100 Sobic002G423000--Sobic007G212100 Sobic001G217500 Sobic001G217500 Sobic002G423000--Sobic001G217500 Sobic002G423000--Sobic004G173700 Sobic010G216400 Sobic010G216400 Sobic002G423000--Sobic010G216400 Sobic003G218400 Sobic003G218400 Sobic002G423000--Sobic003G218400 Sobic002G423000--Sobic003G129900 Sobic001G459500 Sobic001G459500 Sobic003G273900--Sobic001G459500 Sobic003G152900 Sobic003G152900 Sobic003G273900--Sobic003G152900 Sobic004G339300 Sobic004G339300 Sobic003G273900--Sobic004G339300 Sobic003G116600 Sobic003G116600 Sobic003G273900--Sobic003G116600 Sobic001G342200 Sobic001G342200 Sobic003G273900--Sobic001G342200 Sobic004G030000 Sobic004G030000 Sobic003G273900--Sobic004G030000 Sobic009G112900 Sobic009G112900 Sobic003G273900--Sobic009G112900 Sobic010G007400 Sobic010G007400 Sobic003G273900--Sobic010G007400 Sobic002G401700 Sobic002G401700 Sobic003G273900--Sobic002G401700
Octagon: transcription factors


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