Gene annotation
Transcriptome id Sobic.002G034700.1
Synonym SnRK3.23, Sb02g003030, ATCIPK23, LKS1, CIPK23
Functional annotation similar to Putative uncharacterized protein (PubMedID : 29862293)
CAMK_KIN1/SNF1/Nim1_like.28 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
UniProt C4P7S2 , A0A1W0W220
Pfam PF03822 PF00069
Panther DB PTHR24343 PTHR24343:SF136
NCBI CDD KOG0583; Serine/threonine protein kinase
KEGG Orthology -
Gene Ontology GO:0007165; signal transduction GO:0006468protein phosphorylation GO:0005524ATP binding GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT1G30270 : CBL-interacting protein kinase 23
RAP-DB (Rice) LOC_Os07g05620.2 : CAMK_KIN1/SNF1/Nim1_like.28 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
MaizeGDB (Corn) Zm00025a057016 , Zm00025a045015 , Zm00025a028830 , Zm00025a033384 , Zm00025a028958 , Zm00025a022744
Brachypodium KQK21052
Barley HORVU2Hr1G060350.14 , HORVU2Hr1G060350.15 , HORVU2Hr1G060350.16 , HORVU2Hr1G060350.10 , HORVU2Hr1G060350.11 , HORVU2Hr1G060350.12 , HORVU2Hr1G060350.13 , HORVU2Hr1G060350.7 , HORVU2Hr1G060350.4 , HORVU2Hr1G060350.5 , HORVU2Hr1G060350.2 , HORVU2Hr1G060350.3 , HORVU2Hr1G060350.1 , HORVU2Hr1G060350.8 , HORVU2Hr1G060350.9 , HORVU2Hr1G060350.6
Wheat TraesCS2D02G252600 , TraesCS2B02G271700 , TraesCS2A02G251800
Populus -


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cDNA sequences
Sobic.002G034700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G485000 expressed protein -
2 Sobic.006G120900 dehydrogenase, putative, expressed K00030: isocitrate dehydrogenase (NAD+)
3 Sobic.001G020700 expressed protein -
4 Sobic.007G138100 zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
5 Sobic.002G397900 39S ribosomal protein L46, mitochondrial precursor, putative, expressed K17427: large subunit ribosomal protein L46
6 Sobic.003G129900 dehydrogenase, putative, expressed K00030: isocitrate dehydrogenase (NAD+)
7 Sobic.001G387200 expressed protein -
8 Sobic.009G017600 cupin domain containing protein, expressed -
9 Sobic.003G380300 cytochrome c, putative, expressed K08738: cytochrome c
10 Sobic.004G247500 "HD-zip transcription factor, ortholog of sihdz02 of foxtail millet (Setaria italica L.)"(PubMedID : 29862293)@caleosin related protein, putative, expressed K17991: peroxygenase
11 Sobic.009G157800 transporter family protein, putative, expressed -
12 Sobic.002G382300 expressed protein -
13 Sobic.001G408400 phosphatase, putative, expressed K07252: dolichyldiphosphatase
14 Sobic.003G349900 50S ribosomal protein L17, putative, expressed K02879: RP-L17, MRPL17, large subunit ribosomal protein L17
15 Sobic.001G015000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@nuclear antigen, putative, expressed -
16 Sobic.002G259700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transketolase, putative, expressed K00162: PDHB, pyruvate dehydrogenase E1 component beta subunit
17 Sobic.002G113200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.001G365700 OsRhmbd13 - Putative Rhomboid homologue, expressed -
19 Sobic.004G173700 SLL1 protein, putative, expressed -
20 Sobic.008G050900 expressed protein -


Gene co-expression network
sample Sobic002G034700 Sobic002G034700 Sobic001G485000 Sobic001G485000 Sobic002G034700--Sobic001G485000 Sobic006G120900 Sobic006G120900 Sobic002G034700--Sobic006G120900 Sobic001G020700 Sobic001G020700 Sobic002G034700--Sobic001G020700 Sobic007G138100 Sobic007G138100 Sobic002G034700--Sobic007G138100 Sobic002G397900 Sobic002G397900 Sobic002G034700--Sobic002G397900 Sobic003G129900 Sobic003G129900 Sobic002G034700--Sobic003G129900 Sobic001G387200 Sobic001G387200 Sobic002G034700--Sobic001G387200 Sobic009G017600 Sobic009G017600 Sobic002G034700--Sobic009G017600 Sobic003G380300 Sobic003G380300 Sobic002G034700--Sobic003G380300 Sobic001G015000 Sobic001G015000 Sobic001G485000--Sobic001G015000 Sobic001G103600 Sobic001G103600 Sobic001G485000--Sobic001G103600 Sobic009G240500 Sobic009G240500 Sobic001G485000--Sobic009G240500 Sobic008G095500 Sobic008G095500 Sobic001G485000--Sobic008G095500 Sobic003G018000 Sobic003G018000 Sobic001G485000--Sobic003G018000 Sobic001G242200 Sobic001G242200 Sobic001G485000--Sobic001G242200 Sobic004G002700 Sobic004G002700 Sobic001G485000--Sobic004G002700 Sobic002G013550 Sobic002G013550 Sobic001G485000--Sobic002G013550 Sobic009G149100 Sobic009G149100 Sobic001G485000--Sobic009G149100 Sobic004G173700 Sobic004G173700 Sobic006G120900--Sobic004G173700 Sobic003G234500 Sobic003G234500 Sobic006G120900--Sobic003G234500 Sobic003G089100 Sobic003G089100 Sobic006G120900--Sobic003G089100 Sobic006G120900--Sobic003G129900 Sobic006G120900--Sobic003G380300 Sobic003G212000 Sobic003G212000 Sobic006G120900--Sobic003G212000 Sobic006G120900--Sobic001G387200 Sobic002G420600 Sobic002G420600 Sobic006G120900--Sobic002G420600 Sobic003G137600 Sobic003G137600 Sobic006G120900--Sobic003G137600 Sobic004G062200 Sobic004G062200 Sobic001G020700--Sobic004G062200 Sobic001G039100 Sobic001G039100 Sobic001G020700--Sobic001G039100 Sobic010G105000 Sobic010G105000 Sobic001G020700--Sobic010G105000 Sobic001G020700--Sobic003G212000 Sobic001G020700--Sobic006G120900 Sobic001G020700--Sobic003G380300 Sobic008G050900 Sobic008G050900 Sobic001G020700--Sobic008G050900 Sobic008G071300 Sobic008G071300 Sobic001G020700--Sobic008G071300 Sobic004G298200 Sobic004G298200 Sobic001G020700--Sobic004G298200 Sobic002G113200 Sobic002G113200 Sobic007G138100--Sobic002G113200 Sobic007G138100--Sobic003G212000 Sobic007G138100--Sobic003G137600 Sobic007G138000 Sobic007G138000 Sobic007G138100--Sobic007G138000 Sobic007G138100--Sobic003G234500 Sobic003G040700 Sobic003G040700 Sobic007G138100--Sobic003G040700 Sobic007G138100--Sobic008G071300 Sobic007G138100--Sobic006G120900 Sobic006G267100 Sobic006G267100 Sobic007G138100--Sobic006G267100 Sobic003G349900 Sobic003G349900 Sobic002G397900--Sobic003G349900 Sobic001G280500 Sobic001G280500 Sobic002G397900--Sobic001G280500 Sobic002G397900--Sobic003G089100 Sobic004G074600 Sobic004G074600 Sobic002G397900--Sobic004G074600 Sobic002G213900 Sobic002G213900 Sobic002G397900--Sobic002G213900 Sobic002G414800 Sobic002G414800 Sobic002G397900--Sobic002G414800 Sobic002G054700 Sobic002G054700 Sobic002G397900--Sobic002G054700 Sobic001G356200 Sobic001G356200 Sobic002G397900--Sobic001G356200 Sobic003G201500 Sobic003G201500 Sobic002G397900--Sobic003G201500 Sobic003G129900--Sobic001G387200 Sobic004G093600 Sobic004G093600 Sobic003G129900--Sobic004G093600 Sobic003G129900--Sobic006G120900 Sobic005G019100 Sobic005G019100 Sobic003G129900--Sobic005G019100 Sobic003G129900--Sobic004G173700 Sobic004G256700 Sobic004G256700 Sobic003G129900--Sobic004G256700 Sobic003G129900--Sobic002G420600 Sobic003G034900 Sobic003G034900 Sobic003G129900--Sobic003G034900 Sobic001G518500 Sobic001G518500 Sobic003G129900--Sobic001G518500 Sobic001G387200--Sobic003G129900 Sobic001G387200--Sobic004G093600 Sobic001G387200--Sobic006G120900 Sobic001G387200--Sobic004G173700 Sobic008G018300 Sobic008G018300 Sobic001G387200--Sobic008G018300 Sobic001G387200--Sobic004G256700 Sobic002G255400 Sobic002G255400 Sobic001G387200--Sobic002G255400 Sobic001G387200--Sobic002G420600 Sobic001G387200--Sobic005G019100 Sobic009G017600--Sobic001G103600 Sobic009G017600--Sobic001G015000 Sobic009G017600--Sobic004G002700 Sobic009G017600--Sobic008G095500 Sobic004G003300 Sobic004G003300 Sobic009G017600--Sobic004G003300 Sobic001G518900 Sobic001G518900 Sobic009G017600--Sobic001G518900 Sobic009G017600--Sobic009G149100 Sobic004G217100 Sobic004G217100 Sobic009G017600--Sobic004G217100 Sobic002G097200 Sobic002G097200 Sobic009G017600--Sobic002G097200 Sobic003G380300--Sobic006G120900 Sobic001G408400 Sobic001G408400 Sobic003G380300--Sobic001G408400 Sobic003G380300--Sobic001G387200 Sobic003G380300--Sobic010G105000 Sobic003G380300--Sobic004G173700 Sobic003G380300--Sobic003G234500 Sobic003G380300--Sobic003G137600 Sobic003G380300--Sobic003G129900 Sobic002G259700 Sobic002G259700 Sobic003G380300--Sobic002G259700
Octagon: transcription factors


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