Gene annotation
Transcriptome id Sobic.009G050500.1
Synonym NFU4, Sb09g004310, ATNFU2
Functional annotation nifU, putative, expressed
UniProt C5Z0J5
Pfam PF01106 PF08712
Panther DB PTHR11178 PTHR11178:SF1
NCBI CDD KOG2358; NifU-like domain-containing proteins
KEGG Orthology -
Gene Ontology GO:0016226; iron-sulfur cluster assembly GO:0005506iron ion binding


Orthologs (automatic annotation)
TAIR AT3G20970 : NFU domain protein 4
RAP-DB (Rice) LOC_Os05g06330.1 : nifU, putative, expressed
MaizeGDB (Corn) Zm00025a036909
Brachypodium KQK07399
Barley HORVU1Hr1G022700.4 , HORVU1Hr1G022700.5 , HORVU1Hr1G022700.6 , HORVU1Hr1G022700.7 , HORVU1Hr1G022700.1 , HORVU1Hr1G022700.2 , HORVU1Hr1G022700.3 , HORVU1Hr1G022700.8 , HORVU1Hr1G022700.9 , HORVU1Hr1G022700.10 , HORVU1Hr1G022700.11
Wheat TraesCS1A02G097200 , TraesCS1B02G126700 , TraesCS1D02G106000
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.009G050500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G023100 heat shock protein DnaJ, putative, expressed -
2 Sobic.002G431000 transporter, putative, expressed -
3 Sobic.002G291600 - -
4 Sobic.003G043800 BT1 family protein, putative, expressed -
5 Sobic.003G305900 expressed protein -
6 Sobic.003G346500 similar to Nuclear transcription factor Y subunit B-3(PubMedID : 29862293)@tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed K08065: NFYB, nuclear transcription Y subunit beta
7 Sobic.003G377000 powdery mildew resistant protein 5, putative, expressed -
8 Sobic.002G139600 2-phosphoglycerate kinase-related, putative, expressed -
9 Sobic.003G270600 adaptor complexes medium subunit family domain containing protein, expressed K12393: AP-1 complex subunit mu
10 Sobic.007G056100 expressed protein K15077: elongin-A
11 Sobic.010G243400 expressed protein -
12 Sobic.004G256700 ZAC, putative, expressed K12486: stromal membrane-associated protein
13 Sobic.002G355800 calcium-binding protein, putative, expressed K08272: CAB39, calcium binding protein 39
14 Sobic.003G160500 thiamin pyrophosphokinase 1, putative, expressed K00949: thiN, TPK1, thiamine pyrophosphokinase
15 Sobic.001G122000 oxysterol-binding protein, putative, expressed -
16 Sobic.006G217300 NAD dependent epimerase/dehydratase family domain containing protein, expressed K12448: UXE, UDP-arabinose 4-epimerase
17 Sobic.005G177700 transmembrane protein 49, putative, expressed -
18 Sobic.006G219900 csAtPR5, putative, expressed -
19 Sobic.008G140400 diacylglycerol kinase 1, putative, expressed K00901: dgkA, diacylglycerol kinase (ATP)
20 Sobic.001G421400 expressed protein -


Gene co-expression network
sample Sobic009G050500 Sobic009G050500 Sobic002G023100 Sobic002G023100 Sobic009G050500--Sobic002G023100 Sobic002G431000 Sobic002G431000 Sobic009G050500--Sobic002G431000 Sobic002G291600 Sobic002G291600 Sobic009G050500--Sobic002G291600 Sobic003G043800 Sobic003G043800 Sobic009G050500--Sobic003G043800 Sobic003G305900 Sobic003G305900 Sobic009G050500--Sobic003G305900 Sobic003G346500 Sobic003G346500 Sobic009G050500--Sobic003G346500 Sobic003G377000 Sobic003G377000 Sobic009G050500--Sobic003G377000 Sobic002G139600 Sobic002G139600 Sobic009G050500--Sobic002G139600 Sobic003G270600 Sobic003G270600 Sobic009G050500--Sobic003G270600 Sobic003G190600 Sobic003G190600 Sobic002G023100--Sobic003G190600 Sobic003G160500 Sobic003G160500 Sobic002G023100--Sobic003G160500 Sobic002G023100--Sobic003G305900 Sobic007G158900 Sobic007G158900 Sobic002G023100--Sobic007G158900 Sobic001G061200 Sobic001G061200 Sobic002G023100--Sobic001G061200 Sobic002G023100--Sobic009G050500 Sobic003G058500 Sobic003G058500 Sobic002G023100--Sobic003G058500 Sobic010G181600 Sobic010G181600 Sobic002G023100--Sobic010G181600 Sobic004G141400 Sobic004G141400 Sobic002G023100--Sobic004G141400 Sobic010G184300 Sobic010G184300 Sobic002G431000--Sobic010G184300 Sobic002G295700 Sobic002G295700 Sobic002G431000--Sobic002G295700 Sobic002G431000--Sobic003G377000 Sobic001G457700 Sobic001G457700 Sobic002G431000--Sobic001G457700 Sobic004G236200 Sobic004G236200 Sobic002G431000--Sobic004G236200 Sobic005G177700 Sobic005G177700 Sobic002G431000--Sobic005G177700 Sobic004G112900 Sobic004G112900 Sobic002G431000--Sobic004G112900 Sobic007G056100 Sobic007G056100 Sobic002G431000--Sobic007G056100 Sobic010G064600 Sobic010G064600 Sobic002G431000--Sobic010G064600 Sobic002G291600--Sobic003G190600 Sobic002G291600--Sobic002G023100 Sobic002G291600--Sobic004G141400 Sobic002G291600--Sobic009G050500 Sobic002G291600--Sobic010G181600 Sobic004G218300 Sobic004G218300 Sobic002G291600--Sobic004G218300 Sobic010G243400 Sobic010G243400 Sobic002G291600--Sobic010G243400 Sobic002G291600--Sobic007G158900 Sobic001G378200 Sobic001G378200 Sobic002G291600--Sobic001G378200 Sobic006G217300 Sobic006G217300 Sobic003G043800--Sobic006G217300 Sobic001G122500 Sobic001G122500 Sobic003G043800--Sobic001G122500 Sobic010G026300 Sobic010G026300 Sobic003G043800--Sobic010G026300 Sobic004G124500 Sobic004G124500 Sobic003G043800--Sobic004G124500 Sobic004G207900 Sobic004G207900 Sobic003G043800--Sobic004G207900 Sobic003G043800--Sobic001G378200 Sobic006G207900 Sobic006G207900 Sobic003G043800--Sobic006G207900 Sobic006G055400 Sobic006G055400 Sobic003G043800--Sobic006G055400 Sobic005G207400 Sobic005G207400 Sobic003G043800--Sobic005G207400 Sobic003G305900--Sobic003G160500 Sobic003G305900--Sobic002G023100 Sobic001G277300 Sobic001G277300 Sobic003G305900--Sobic001G277300 Sobic001G385000 Sobic001G385000 Sobic003G305900--Sobic001G385000 Sobic003G305900--Sobic010G181600 Sobic003G022000 Sobic003G022000 Sobic003G305900--Sobic003G022000 Sobic002G397900 Sobic002G397900 Sobic003G305900--Sobic002G397900 Sobic003G117800 Sobic003G117800 Sobic003G305900--Sobic003G117800 Sobic010G160300 Sobic010G160300 Sobic003G305900--Sobic010G160300 Sobic004G101500 Sobic004G101500 Sobic003G346500--Sobic004G101500 Sobic004G186300 Sobic004G186300 Sobic003G346500--Sobic004G186300 Sobic010G253400 Sobic010G253400 Sobic003G346500--Sobic010G253400 Sobic006G222500 Sobic006G222500 Sobic003G346500--Sobic006G222500 Sobic008G140400 Sobic008G140400 Sobic003G346500--Sobic008G140400 Sobic007G148400 Sobic007G148400 Sobic003G346500--Sobic007G148400 Sobic003G270100 Sobic003G270100 Sobic003G346500--Sobic003G270100 Sobic007G140600 Sobic007G140600 Sobic003G346500--Sobic007G140600 Sobic001G408400 Sobic001G408400 Sobic003G346500--Sobic001G408400 Sobic002G265300 Sobic002G265300 Sobic003G377000--Sobic002G265300 Sobic003G377000--Sobic002G431000 Sobic003G377000--Sobic002G139600 Sobic003G377000--Sobic005G177700 Sobic007G026800 Sobic007G026800 Sobic003G377000--Sobic007G026800 Sobic003G377000--Sobic010G184300 Sobic004G093600 Sobic004G093600 Sobic003G377000--Sobic004G093600 Sobic004G096700 Sobic004G096700 Sobic003G377000--Sobic004G096700 SobicK043400 SobicK043400 Sobic003G377000--SobicK043400 Sobic002G139600--Sobic003G377000 Sobic002G007800 Sobic002G007800 Sobic002G139600--Sobic002G007800 Sobic002G139600--Sobic002G431000 Sobic004G198800 Sobic004G198800 Sobic002G139600--Sobic004G198800 Sobic002G160100 Sobic002G160100 Sobic002G139600--Sobic002G160100 Sobic001G179800 Sobic001G179800 Sobic002G139600--Sobic001G179800 Sobic004G192800 Sobic004G192800 Sobic002G139600--Sobic004G192800 Sobic002G139600--SobicK043400 Sobic003G308800 Sobic003G308800 Sobic002G139600--Sobic003G308800 Sobic003G270600--Sobic004G236200 Sobic003G394200 Sobic003G394200 Sobic003G270600--Sobic003G394200 Sobic009G229600 Sobic009G229600 Sobic003G270600--Sobic009G229600 Sobic003G427600 Sobic003G427600 Sobic003G270600--Sobic003G427600 Sobic009G226400 Sobic009G226400 Sobic003G270600--Sobic009G226400 Sobic004G039600 Sobic004G039600 Sobic003G270600--Sobic004G039600 Sobic001G369000 Sobic001G369000 Sobic003G270600--Sobic001G369000 Sobic009G049400 Sobic009G049400 Sobic003G270600--Sobic009G049400 Sobic004G228800 Sobic004G228800 Sobic003G270600--Sobic004G228800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.