Gene annotation
Transcriptome id Sobic.003G305900.1
Synonym Sb03g035440
Functional annotation expressed protein
UniProt C5XKW0
Pfam PF02582
Panther DB PTHR16255 PTHR16255:SF9
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G69380 : Protein of unknown function (DUF155)
RAP-DB (Rice) LOC_Os01g55860.1 : expressed protein
MaizeGDB (Corn) Zm00025a027444
Brachypodium PNT72908 , PNT72906 , PNT72907
Barley HORVU2Hr1G034660.35 , HORVU2Hr1G034660.34 , HORVU2Hr1G034660.37 , HORVU2Hr1G034660.36 , HORVU2Hr1G034660.31 , HORVU2Hr1G034660.30 , HORVU2Hr1G034660.33 , HORVU2Hr1G034660.32 , HORVU2Hr1G034660.39 , HORVU2Hr1G034660.38 , HORVU2Hr1G100980.18 , HORVU2Hr1G100980.19 , HORVU2Hr1G100980.10 , HORVU2Hr1G100980.11 , HORVU2Hr1G100980.12 , HORVU2Hr1G100980.13 , HORVU2Hr1G100980.14 , HORVU2Hr1G100980.15 , HORVU2Hr1G100980.16 , HORVU2Hr1G100980.17 , HORVU2Hr1G034660.28 , HORVU2Hr1G034660.29 , HORVU2Hr1G034660.22 , HORVU2Hr1G034660.23 , HORVU2Hr1G034660.20 , HORVU2Hr1G034660.21 , HORVU2Hr1G034660.26 , HORVU2Hr1G034660.27 , HORVU2Hr1G034660.24 , HORVU2Hr1G034660.25 , HORVU3Hr1G074120.1 , HORVU3Hr1G074120.3 , HORVU3Hr1G074120.2 , HORVU3Hr1G074120.5 , HORVU3Hr1G074120.4 , HORVU3Hr1G074120.7 , HORVU3Hr1G074120.6 , HORVU3Hr1G074120.9 , HORVU3Hr1G074120.8 , HORVU2Hr1G100980.29 , HORVU2Hr1G100980.28 , HORVU2Hr1G100980.25 , HORVU2Hr1G100980.24 , HORVU2Hr1G100980.27 , HORVU2Hr1G100980.26 , HORVU2Hr1G100980.21 , HORVU2Hr1G100980.20 , HORVU2Hr1G100980.23 , HORVU2Hr1G100980.22 , HORVU2Hr1G100980.8 , HORVU2Hr1G100980.9 , HORVU2Hr1G034660.58 , HORVU2Hr1G100980.2 , HORVU2Hr1G100980.3 , HORVU2Hr1G034660.55 , HORVU2Hr1G100980.1 , HORVU2Hr1G100980.6 , HORVU2Hr1G100980.7 , HORVU2Hr1G100980.4 , HORVU2Hr1G100980.5 , HORVU2Hr1G100980.32 , HORVU2Hr1G100980.33 , HORVU2Hr1G100980.30 , HORVU2Hr1G100980.31 , HORVU2Hr1G034660.48 , HORVU2Hr1G034660.49 , HORVU2Hr1G034660.44 , HORVU2Hr1G034660.45 , HORVU2Hr1G034660.46 , HORVU2Hr1G034660.47 , HORVU2Hr1G034660.40 , HORVU2Hr1G034660.41 , HORVU2Hr1G034660.42 , HORVU2Hr1G034660.43 , HORVU2Hr1G034660.57 , HORVU2Hr1G034660.56 , HORVU2Hr1G034660.54 , HORVU2Hr1G116720.1 , HORVU2Hr1G034660.53 , HORVU2Hr1G034660.52 , HORVU2Hr1G034660.51 , HORVU2Hr1G034660.50 , HORVU3Hr1G074120.11 , HORVU3Hr1G074120.10 , HORVU2Hr1G034660.13 , HORVU2Hr1G034660.12 , HORVU2Hr1G034660.17 , HORVU2Hr1G034660.16 , HORVU2Hr1G034660.15 , HORVU2Hr1G034660.14 , HORVU2Hr1G034660.19 , HORVU2Hr1G034660.18
Wheat TraesCS3A02G302000 , TraesCS3A02G302000 , TraesCS3D02G300000 , TraesCS3B02G334600 , TraesCS3B02G334600
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G160500 thiamin pyrophosphokinase 1, putative, expressed K00949: thiN, TPK1, thiamine pyrophosphokinase
2 Sobic.002G023100 heat shock protein DnaJ, putative, expressed -
3 Sobic.001G277300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsFBX351 - F-box domain containing protein, expressed -
4 Sobic.001G385000 nucleoside-triphosphatase, putative, expressed K14641: apyrase
5 Sobic.010G181600 WD domain, G-beta repeat domain containing protein, expressed K13137: STRAP, serine-threonine kinase receptor-associated protein
6 Sobic.003G022000 phospho-N-acetylmuramoyl-pentapeptide-transferase, putative, expressed K01000: phospho-N-acetylmuramoyl-pentapeptide-transferase
7 Sobic.002G397900 39S ribosomal protein L46, mitochondrial precursor, putative, expressed K17427: large subunit ribosomal protein L46
8 Sobic.003G117800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
9 Sobic.010G160300 RNA recognition motif containing protein, putative, expressed -
10 Sobic.003G058500 expressed protein -
11 Sobic.003G394500 GPI transamidase component PIG-S-related, putative, expressed K05291: GPI-anchor transamidase subunit S
12 Sobic.006G050100 expressed protein -
13 Sobic.006G204700 oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed K10770: ALKBH8, alkylated DNA repair protein alkB homolog 8
14 Sobic.006G112500 CAF1 family ribonuclease containing protein, putative, expressed K01148: PARN, poly(A)-specific ribonuclease
15 Sobic.001G073700 tubulin/FtsZ domain containing protein, putative, expressed K07374: tubulin alpha
16 Sobic.001G203600 PPR repeat domain containing protein, putative, expressed -
17 Sobic.009G040250 - -
18 Sobic.010G086300 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ
19 Sobic.003G372200 AGC_AGC_other_PDK1_Pk61C.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed K06276: 3-phosphoinositide dependent protein kinase-1
20 Sobic.003G021600 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K13117: ATP-dependent RNA helicase DDX35


Gene co-expression network
sample Sobic003G305900 Sobic003G305900 Sobic003G160500 Sobic003G160500 Sobic003G305900--Sobic003G160500 Sobic002G023100 Sobic002G023100 Sobic003G305900--Sobic002G023100 Sobic001G277300 Sobic001G277300 Sobic003G305900--Sobic001G277300 Sobic001G385000 Sobic001G385000 Sobic003G305900--Sobic001G385000 Sobic010G181600 Sobic010G181600 Sobic003G305900--Sobic010G181600 Sobic003G022000 Sobic003G022000 Sobic003G305900--Sobic003G022000 Sobic002G397900 Sobic002G397900 Sobic003G305900--Sobic002G397900 Sobic003G117800 Sobic003G117800 Sobic003G305900--Sobic003G117800 Sobic010G160300 Sobic010G160300 Sobic003G305900--Sobic010G160300 Sobic003G058500 Sobic003G058500 Sobic003G160500--Sobic003G058500 Sobic003G160500--Sobic002G023100 Sobic003G160500--Sobic003G305900 Sobic001G399700 Sobic001G399700 Sobic003G160500--Sobic001G399700 Sobic001G501900 Sobic001G501900 Sobic003G160500--Sobic001G501900 Sobic001G378800 Sobic001G378800 Sobic003G160500--Sobic001G378800 Sobic006G232800 Sobic006G232800 Sobic003G160500--Sobic006G232800 Sobic003G160500--Sobic010G160300 Sobic003G160500--Sobic010G181600 Sobic003G190600 Sobic003G190600 Sobic002G023100--Sobic003G190600 Sobic002G023100--Sobic003G160500 Sobic002G023100--Sobic003G305900 Sobic007G158900 Sobic007G158900 Sobic002G023100--Sobic007G158900 Sobic001G061200 Sobic001G061200 Sobic002G023100--Sobic001G061200 Sobic009G050500 Sobic009G050500 Sobic002G023100--Sobic009G050500 Sobic002G023100--Sobic003G058500 Sobic002G023100--Sobic010G181600 Sobic004G141400 Sobic004G141400 Sobic002G023100--Sobic004G141400 Sobic001G277300--Sobic003G305900 Sobic003G057050 Sobic003G057050 Sobic001G277300--Sobic003G057050 Sobic001G277300--Sobic002G397900 Sobic008G095900 Sobic008G095900 Sobic001G277300--Sobic008G095900 Sobic002G108100 Sobic002G108100 Sobic001G277300--Sobic002G108100 Sobic002G362500 Sobic002G362500 Sobic001G277300--Sobic002G362500 Sobic004G051600 Sobic004G051600 Sobic001G277300--Sobic004G051600 Sobic008G132200 Sobic008G132200 Sobic001G277300--Sobic008G132200 Sobic001G277300--Sobic001G378800 Sobic010G086300 Sobic010G086300 Sobic001G385000--Sobic010G086300 Sobic003G394500 Sobic003G394500 Sobic001G385000--Sobic003G394500 Sobic001G385000--Sobic006G232800 Sobic001G149000 Sobic001G149000 Sobic001G385000--Sobic001G149000 Sobic001G385000--Sobic003G117800 Sobic001G356200 Sobic001G356200 Sobic001G385000--Sobic001G356200 Sobic008G152700 Sobic008G152700 Sobic001G385000--Sobic008G152700 Sobic001G424800 Sobic001G424800 Sobic001G385000--Sobic001G424800 Sobic001G308500 Sobic001G308500 Sobic001G385000--Sobic001G308500 Sobic010G181600--Sobic003G058500 Sobic010G181600--Sobic001G424800 Sobic010G181600--Sobic003G117800 Sobic001G475300 Sobic001G475300 Sobic010G181600--Sobic001G475300 Sobic008G006000 Sobic008G006000 Sobic010G181600--Sobic008G006000 Sobic003G353700 Sobic003G353700 Sobic010G181600--Sobic003G353700 Sobic007G218600 Sobic007G218600 Sobic010G181600--Sobic007G218600 Sobic004G004100 Sobic004G004100 Sobic010G181600--Sobic004G004100 Sobic003G250400 Sobic003G250400 Sobic010G181600--Sobic003G250400 Sobic002G167100 Sobic002G167100 Sobic003G022000--Sobic002G167100 Sobic007G086600 Sobic007G086600 Sobic003G022000--Sobic007G086600 Sobic002G201700 Sobic002G201700 Sobic003G022000--Sobic002G201700 Sobic007G192500 Sobic007G192500 Sobic003G022000--Sobic007G192500 Sobic002G309100 Sobic002G309100 Sobic003G022000--Sobic002G309100 Sobic001G499500 Sobic001G499500 Sobic003G022000--Sobic001G499500 Sobic003G022000--Sobic001G385000 Sobic001G117900 Sobic001G117900 Sobic003G022000--Sobic001G117900 Sobic009G025700 Sobic009G025700 Sobic003G022000--Sobic009G025700 Sobic003G349900 Sobic003G349900 Sobic002G397900--Sobic003G349900 Sobic001G280500 Sobic001G280500 Sobic002G397900--Sobic001G280500 Sobic003G089100 Sobic003G089100 Sobic002G397900--Sobic003G089100 Sobic004G074600 Sobic004G074600 Sobic002G397900--Sobic004G074600 Sobic002G213900 Sobic002G213900 Sobic002G397900--Sobic002G213900 Sobic002G414800 Sobic002G414800 Sobic002G397900--Sobic002G414800 Sobic002G054700 Sobic002G054700 Sobic002G397900--Sobic002G054700 Sobic002G397900--Sobic001G356200 Sobic003G201500 Sobic003G201500 Sobic002G397900--Sobic003G201500 Sobic003G117800--Sobic001G424800 Sobic003G385300 Sobic003G385300 Sobic003G117800--Sobic003G385300 Sobic003G117800--Sobic003G394500 Sobic001G057400 Sobic001G057400 Sobic003G117800--Sobic001G057400 Sobic003G117800--Sobic008G152700 Sobic003G117800--Sobic001G149000 Sobic003G117800--Sobic001G356200 Sobic003G117800--Sobic001G385000 Sobic009G046900 Sobic009G046900 Sobic003G117800--Sobic009G046900 Sobic002G304700 Sobic002G304700 Sobic010G160300--Sobic002G304700 Sobic010G160300--Sobic001G280500 Sobic005G063200 Sobic005G063200 Sobic010G160300--Sobic005G063200 Sobic001G114200 Sobic001G114200 Sobic010G160300--Sobic001G114200 Sobic010G160300--Sobic001G501900 Sobic004G350700 Sobic004G350700 Sobic010G160300--Sobic004G350700 Sobic002G007800 Sobic002G007800 Sobic010G160300--Sobic002G007800 Sobic010G160300--Sobic003G117800 Sobic010G160300--Sobic001G149000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.