Gene annotation
Transcriptome id Sobic.001G277300.1
Synonym Sb01g027340
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
OsFBX351 - F-box domain containing protein, expressed
UniProt C5WPY9
Pfam PF00646
Panther DB PTHR32212 PTHR32212:SF88
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G58930 : F-box/RNI-like superfamily protein
RAP-DB (Rice) LOC_Os10g03780.1 : OsFBX351 - F-box domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat TraesCS7B02G235800
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G305900 expressed protein -
2 Sobic.003G057050 - -
3 Sobic.002G397900 39S ribosomal protein L46, mitochondrial precursor, putative, expressed K17427: large subunit ribosomal protein L46
4 Sobic.008G095900 ATP binding protein, putative, expressed K17592: sacsin
5 Sobic.002G108100 OsFBLD6 - F-box, LRR and FBD domain containing protein, expressed -
6 Sobic.002G362500 expressed protein -
7 Sobic.004G051600 EMB2758, putative, expressed -
8 Sobic.008G132200 tetratricopeptide repeat domain containing protein, expressed -
9 Sobic.001G378800 fumarate hydratase, mitochondrial precursor, putative, expressed K01679: E4.2.1.2B, fumC, fumarate hydratase, class II
10 Sobic.001G073700 tubulin/FtsZ domain containing protein, putative, expressed K07374: tubulin alpha
11 Sobic.001G498800 UAA transporter family domain containing protein, expressed K15272: solute carrier family 35 (UDP-sugar transporter), member A1/2/3
12 Sobic.001G385000 nucleoside-triphosphatase, putative, expressed K14641: apyrase
13 Sobic.003G291900 expressed protein -
14 Sobic.005G048600 expressed protein -
15 Sobic.003G160500 thiamin pyrophosphokinase 1, putative, expressed K00949: thiN, TPK1, thiamine pyrophosphokinase
16 Sobic.002G414800 PPR repeat domain containing protein, putative, expressed -
17 Sobic.003G200000 respiratory burst oxidase, putative, expressed -
18 Sobic.001G308500 glycosyltransferase family protein 1, putative, expressed -
19 Sobic.002G007800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transcription factor jumonji, putative, expressed K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
20 Sobic.003G117800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -


Gene co-expression network
sample Sobic001G277300 Sobic001G277300 Sobic003G305900 Sobic003G305900 Sobic001G277300--Sobic003G305900 Sobic003G057050 Sobic003G057050 Sobic001G277300--Sobic003G057050 Sobic002G397900 Sobic002G397900 Sobic001G277300--Sobic002G397900 Sobic008G095900 Sobic008G095900 Sobic001G277300--Sobic008G095900 Sobic002G108100 Sobic002G108100 Sobic001G277300--Sobic002G108100 Sobic002G362500 Sobic002G362500 Sobic001G277300--Sobic002G362500 Sobic004G051600 Sobic004G051600 Sobic001G277300--Sobic004G051600 Sobic008G132200 Sobic008G132200 Sobic001G277300--Sobic008G132200 Sobic001G378800 Sobic001G378800 Sobic001G277300--Sobic001G378800 Sobic003G160500 Sobic003G160500 Sobic003G305900--Sobic003G160500 Sobic002G023100 Sobic002G023100 Sobic003G305900--Sobic002G023100 Sobic003G305900--Sobic001G277300 Sobic001G385000 Sobic001G385000 Sobic003G305900--Sobic001G385000 Sobic010G181600 Sobic010G181600 Sobic003G305900--Sobic010G181600 Sobic003G022000 Sobic003G022000 Sobic003G305900--Sobic003G022000 Sobic003G305900--Sobic002G397900 Sobic003G117800 Sobic003G117800 Sobic003G305900--Sobic003G117800 Sobic010G160300 Sobic010G160300 Sobic003G305900--Sobic010G160300 Sobic003G057050--Sobic002G362500 Sobic007G039200 Sobic007G039200 Sobic003G057050--Sobic007G039200 Sobic003G057050--Sobic004G051600 Sobic002G414800 Sobic002G414800 Sobic003G057050--Sobic002G414800 Sobic008G166100 Sobic008G166100 Sobic003G057050--Sobic008G166100 Sobic003G349900 Sobic003G349900 Sobic003G057050--Sobic003G349900 Sobic009G163100 Sobic009G163100 Sobic003G057050--Sobic009G163100 Sobic008G156600 Sobic008G156600 Sobic003G057050--Sobic008G156600 Sobic002G389600 Sobic002G389600 Sobic003G057050--Sobic002G389600 Sobic002G397900--Sobic003G349900 Sobic001G280500 Sobic001G280500 Sobic002G397900--Sobic001G280500 Sobic003G089100 Sobic003G089100 Sobic002G397900--Sobic003G089100 Sobic004G074600 Sobic004G074600 Sobic002G397900--Sobic004G074600 Sobic002G213900 Sobic002G213900 Sobic002G397900--Sobic002G213900 Sobic002G397900--Sobic002G414800 Sobic002G054700 Sobic002G054700 Sobic002G397900--Sobic002G054700 Sobic001G356200 Sobic001G356200 Sobic002G397900--Sobic001G356200 Sobic003G201500 Sobic003G201500 Sobic002G397900--Sobic003G201500 Sobic004G194400 Sobic004G194400 Sobic008G095900--Sobic004G194400 Sobic001G308500 Sobic001G308500 Sobic008G095900--Sobic001G308500 Sobic008G095900--Sobic004G051600 Sobic001G478900 Sobic001G478900 Sobic008G095900--Sobic001G478900 Sobic008G085950 Sobic008G085950 Sobic008G095900--Sobic008G085950 Sobic006G191000 Sobic006G191000 Sobic008G095900--Sobic006G191000 Sobic010G086300 Sobic010G086300 Sobic008G095900--Sobic010G086300 Sobic006G071362 Sobic006G071362 Sobic008G095900--Sobic006G071362 Sobic003G004800 Sobic003G004800 Sobic008G095900--Sobic003G004800 Sobic003G342500 Sobic003G342500 Sobic002G108100--Sobic003G342500 Sobic008G155400 Sobic008G155400 Sobic002G108100--Sobic008G155400 Sobic005G045800 Sobic005G045800 Sobic002G108100--Sobic005G045800 Sobic009G066200 Sobic009G066200 Sobic002G108100--Sobic009G066200 Sobic003G200000 Sobic003G200000 Sobic002G108100--Sobic003G200000 Sobic003G352900 Sobic003G352900 Sobic002G108100--Sobic003G352900 Sobic007G189100 Sobic007G189100 Sobic002G108100--Sobic007G189100 Sobic007G118050 Sobic007G118050 Sobic002G108100--Sobic007G118050 Sobic001G131900 Sobic001G131900 Sobic002G108100--Sobic001G131900 Sobic001G322400 Sobic001G322400 Sobic002G362500--Sobic001G322400 Sobic001G072000 Sobic001G072000 Sobic002G362500--Sobic001G072000 Sobic009G201000 Sobic009G201000 Sobic002G362500--Sobic009G201000 Sobic002G362500--Sobic008G166100 Sobic002G362500--Sobic007G039200 Sobic002G362500--Sobic009G163100 Sobic004G113600 Sobic004G113600 Sobic002G362500--Sobic004G113600 Sobic001G387300 Sobic001G387300 Sobic002G362500--Sobic001G387300 Sobic004G074900 Sobic004G074900 Sobic002G362500--Sobic004G074900 Sobic004G051600--Sobic003G057050 Sobic004G051600--Sobic002G362500 Sobic004G051600--Sobic008G095900 Sobic004G051600--Sobic002G414800 Sobic004G051600--Sobic008G166100 Sobic004G051600--Sobic001G308500 Sobic004G051600--Sobic009G163100 Sobic006G219801 Sobic006G219801 Sobic004G051600--Sobic006G219801 Sobic004G051600--Sobic006G071362 Sobic002G070300 Sobic002G070300 Sobic008G132200--Sobic002G070300 Sobic003G260600 Sobic003G260600 Sobic008G132200--Sobic003G260600 Sobic002G255400 Sobic002G255400 Sobic008G132200--Sobic002G255400 Sobic003G372200 Sobic003G372200 Sobic008G132200--Sobic003G372200 Sobic008G132200--Sobic001G385000 Sobic002G167100 Sobic002G167100 Sobic008G132200--Sobic002G167100 Sobic008G132200--Sobic001G378800 Sobic006G232800 Sobic006G232800 Sobic008G132200--Sobic006G232800 Sobic010G253200 Sobic010G253200 Sobic008G132200--Sobic010G253200 Sobic001G378800--Sobic006G232800 Sobic003G394500 Sobic003G394500 Sobic001G378800--Sobic003G394500 Sobic001G047600 Sobic001G047600 Sobic001G378800--Sobic001G047600 Sobic004G077300 Sobic004G077300 Sobic001G378800--Sobic004G077300 Sobic001G378800--Sobic001G356200 Sobic001G378800--Sobic003G372200 Sobic001G424800 Sobic001G424800 Sobic001G378800--Sobic001G424800 Sobic001G378800--Sobic003G260600 Sobic004G350700 Sobic004G350700 Sobic001G378800--Sobic004G350700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.