Gene annotation
Transcriptome id Sobic.003G291900.3,Sobic.003G291900.2,Sobic.003G291900.1
Synonym Sb03g034240
Functional annotation expressed protein
UniProt C5XJZ8
Pfam PF15925
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os01g53940.1 : expressed protein
MaizeGDB (Corn) Zm00025a040073
Brachypodium -
Barley HORVU4Hr1G037320.1
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G498800 UAA transporter family domain containing protein, expressed K15272: solute carrier family 35 (UDP-sugar transporter), member A1/2/3
2 Sobic.001G378800 fumarate hydratase, mitochondrial precursor, putative, expressed K01679: E4.2.1.2B, fumC, fumarate hydratase, class II
3 Sobic.002G397900 39S ribosomal protein L46, mitochondrial precursor, putative, expressed K17427: large subunit ribosomal protein L46
4 Sobic.001G277300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsFBX351 - F-box domain containing protein, expressed -
5 Sobic.003G260600 ATP synthase, putative, expressed K02133: ATPeF1B, ATP5B, F-type H+-transporting ATPase subunit beta
6 Sobic.009G054600 -(PubMedID : 26976818)@dihydrolipoyl dehydrogenase, mitochondrial precursor, putative, expressed K00382: DLD, lpd, dihydrolipoamide dehydrogenase
7 Sobic.008G152700 expressed protein K07541: GPI mannosyltransferase 1 subunit X
8 Sobic.008G022400 EMB2748, putative, expressed -
9 Sobic.003G201500 outer mitochondrial membrane porin, putative, expressed K15040: voltage-dependent anion channel protein 2
10 Sobic.003G305900 expressed protein -
11 Sobic.004G186900 RNA recognition motif containing protein, putative, expressed -
12 Sobic.001G282200 ribosomal protein L35, putative, expressed -
13 Sobic.007G226800 -(PubMedID : 26976818)@dicarboxylate transporter 5(PubMedID : 27016024)@citrate transporter, putative, expressed K03319: divalent anion:Na+ symporter, DASS family
14 Sobic.003G058500 expressed protein -
15 Sobic.004G077300 guanine nucleotide exchange family protein, putative, expressed K18442: ARFGEF, brefeldin A-inhibited guanine nucleotide-exchange protein
16 Sobic.003G160500 thiamin pyrophosphokinase 1, putative, expressed K00949: thiN, TPK1, thiamine pyrophosphokinase
17 Sobic.002G054700 indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed K01695: tryptophan synthase alpha chain
18 Sobic.006G106300 - K17675: SUPV3L1, ATP-dependent RNA helicase SUPV3L1/SUV3
19 Sobic.003G049200 NADH-cytochrome b5 reductase, putative, expressed K00326: cytochrome-b5 reductase
20 Sobic.010G158000 dolichyl-phosphate beta-glycosyltransferase, putative, expressed -


Gene co-expression network
sample Sobic003G291900 Sobic003G291900 Sobic001G498800 Sobic001G498800 Sobic003G291900--Sobic001G498800 Sobic001G378800 Sobic001G378800 Sobic003G291900--Sobic001G378800 Sobic002G397900 Sobic002G397900 Sobic003G291900--Sobic002G397900 Sobic001G277300 Sobic001G277300 Sobic003G291900--Sobic001G277300 Sobic003G260600 Sobic003G260600 Sobic003G291900--Sobic003G260600 Sobic009G054600 Sobic009G054600 Sobic003G291900--Sobic009G054600 Sobic008G152700 Sobic008G152700 Sobic003G291900--Sobic008G152700 Sobic008G022400 Sobic008G022400 Sobic003G291900--Sobic008G022400 Sobic003G201500 Sobic003G201500 Sobic003G291900--Sobic003G201500 Sobic003G021600 Sobic003G021600 Sobic001G498800--Sobic003G021600 Sobic006G060000 Sobic006G060000 Sobic001G498800--Sobic006G060000 Sobic006G191000 Sobic006G191000 Sobic001G498800--Sobic006G191000 Sobic003G394500 Sobic003G394500 Sobic001G498800--Sobic003G394500 Sobic001G043200 Sobic001G043200 Sobic001G498800--Sobic001G043200 Sobic001G498800--Sobic008G152700 Sobic008G095900 Sobic008G095900 Sobic001G498800--Sobic008G095900 Sobic001G498800--Sobic001G378800 Sobic010G277700 Sobic010G277700 Sobic001G498800--Sobic010G277700 Sobic006G232800 Sobic006G232800 Sobic001G378800--Sobic006G232800 Sobic001G378800--Sobic003G394500 Sobic001G047600 Sobic001G047600 Sobic001G378800--Sobic001G047600 Sobic004G077300 Sobic004G077300 Sobic001G378800--Sobic004G077300 Sobic001G356200 Sobic001G356200 Sobic001G378800--Sobic001G356200 Sobic003G372200 Sobic003G372200 Sobic001G378800--Sobic003G372200 Sobic001G424800 Sobic001G424800 Sobic001G378800--Sobic001G424800 Sobic001G378800--Sobic003G260600 Sobic004G350700 Sobic004G350700 Sobic001G378800--Sobic004G350700 Sobic003G349900 Sobic003G349900 Sobic002G397900--Sobic003G349900 Sobic001G280500 Sobic001G280500 Sobic002G397900--Sobic001G280500 Sobic003G089100 Sobic003G089100 Sobic002G397900--Sobic003G089100 Sobic004G074600 Sobic004G074600 Sobic002G397900--Sobic004G074600 Sobic002G213900 Sobic002G213900 Sobic002G397900--Sobic002G213900 Sobic002G414800 Sobic002G414800 Sobic002G397900--Sobic002G414800 Sobic002G054700 Sobic002G054700 Sobic002G397900--Sobic002G054700 Sobic002G397900--Sobic001G356200 Sobic002G397900--Sobic003G201500 Sobic003G305900 Sobic003G305900 Sobic001G277300--Sobic003G305900 Sobic003G057050 Sobic003G057050 Sobic001G277300--Sobic003G057050 Sobic001G277300--Sobic002G397900 Sobic001G277300--Sobic008G095900 Sobic002G108100 Sobic002G108100 Sobic001G277300--Sobic002G108100 Sobic002G362500 Sobic002G362500 Sobic001G277300--Sobic002G362500 Sobic004G051600 Sobic004G051600 Sobic001G277300--Sobic004G051600 Sobic008G132200 Sobic008G132200 Sobic001G277300--Sobic008G132200 Sobic001G277300--Sobic001G378800 Sobic002G255400 Sobic002G255400 Sobic003G260600--Sobic002G255400 Sobic003G260600--Sobic003G201500 Sobic003G260600--Sobic003G089100 Sobic003G260600--Sobic008G132200 Sobic003G260600--Sobic001G378800 Sobic003G260600--Sobic003G372200 Sobic002G420600 Sobic002G420600 Sobic003G260600--Sobic002G420600 Sobic008G072500 Sobic008G072500 Sobic003G260600--Sobic008G072500 Sobic007G014700 Sobic007G014700 Sobic003G260600--Sobic007G014700 Sobic009G054600--Sobic001G378800 SobicK043400 SobicK043400 Sobic009G054600--SobicK043400 Sobic009G054600--Sobic001G047600 Sobic010G133400 Sobic010G133400 Sobic009G054600--Sobic010G133400 Sobic001G501900 Sobic001G501900 Sobic009G054600--Sobic001G501900 Sobic003G049200 Sobic003G049200 Sobic009G054600--Sobic003G049200 Sobic009G054600--Sobic004G077300 Sobic009G054600--Sobic001G424800 Sobic009G054600--Sobic003G201500 Sobic001G149000 Sobic001G149000 Sobic008G152700--Sobic001G149000 Sobic003G385300 Sobic003G385300 Sobic008G152700--Sobic003G385300 Sobic003G117800 Sobic003G117800 Sobic008G152700--Sobic003G117800 Sobic008G152700--Sobic004G077300 Sobic009G046900 Sobic009G046900 Sobic008G152700--Sobic009G046900 Sobic007G172700 Sobic007G172700 Sobic008G152700--Sobic007G172700 Sobic003G428000 Sobic003G428000 Sobic008G152700--Sobic003G428000 Sobic008G152700--Sobic003G394500 Sobic001G385000 Sobic001G385000 Sobic008G152700--Sobic001G385000 Sobic008G022400--Sobic001G280500 Sobic008G022400--Sobic002G414800 Sobic008G022400--Sobic002G213900 Sobic010G086300 Sobic010G086300 Sobic008G022400--Sobic010G086300 Sobic010G153400 Sobic010G153400 Sobic008G022400--Sobic010G153400 Sobic001G384200 Sobic001G384200 Sobic008G022400--Sobic001G384200 Sobic001G387300 Sobic001G387300 Sobic008G022400--Sobic001G387300 Sobic006G265800 Sobic006G265800 Sobic008G022400--Sobic006G265800 Sobic008G166100 Sobic008G166100 Sobic008G022400--Sobic008G166100 Sobic003G201500--Sobic003G089100 Sobic003G201500--Sobic003G260600 Sobic003G201500--Sobic003G372200 Sobic003G201500--Sobic002G420600 Sobic003G201500--Sobic002G255400 Sobic003G201500--Sobic001G378800 Sobic006G120900 Sobic006G120900 Sobic003G201500--Sobic006G120900 Sobic001G400000 Sobic001G400000 Sobic003G201500--Sobic001G400000 Sobic004G038500 Sobic004G038500 Sobic003G201500--Sobic004G038500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.