Gene annotation
Transcriptome id Sobic.002G139600.1
Synonym Sb02g012650
Functional annotation 2-phosphoglycerate kinase-related, putative, expressed
UniProt A0A1W0W3S3
Pfam PF13207
Panther DB PTHR33477:SF3 PTHR33477
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G60760 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os09g39870.1 : 2-phosphoglycerate kinase-related, putative, expressed
MaizeGDB (Corn) Zm00025a046028 , Zm00025a013473
Brachypodium PNT65212 , KQJ91653 , KQJ91652 , KQJ91654
Barley HORVU4Hr1G000650.7 , HORVU4Hr1G000650.6 , HORVU4Hr1G000650.5 , HORVU4Hr1G000650.4 , HORVU4Hr1G000650.3 , HORVU4Hr1G000650.2 , HORVU4Hr1G000650.1 , HORVU4Hr1G000650.9 , HORVU4Hr1G000650.8 , HORVU4Hr1G000650.14 , HORVU4Hr1G000650.13 , HORVU4Hr1G000650.12 , HORVU4Hr1G000650.11 , HORVU4Hr1G000650.10
Wheat TraesCS4B02G002600 , TraesCS4B02G002600 , TraesCS6A02G355900 , TraesCS4B02G002600 , TraesCS4A02G000800 , TraesCS4A02G000800 , TraesCS4D02G000700 , TraesCS4D02G000700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G377000 powdery mildew resistant protein 5, putative, expressed -
2 Sobic.002G007800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transcription factor jumonji, putative, expressed K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
3 Sobic.002G431000 transporter, putative, expressed -
4 Sobic.004G198800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@expressed protein K01113: alkaline phosphatase D
5 Sobic.002G160100 expressed protein K14001: SIL1, nucleotide exchange factor SIL1
6 Sobic.001G179800 alpha-soluble NSF attachment protein, putative, expressed K15296: NAPA, SNAPA, alpha-soluble NSF attachment protein
7 Sobic.004G192800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@mitochondrial prohibitin complex protein 1, putative, expressed K17080: prohibitin 1
8 Sobic.K043400 dnaJ homolog subfamily C member, putative, expressed K09523: DnaJ homolog subfamily C member 3
9 Sobic.003G308800 transmembrane protein 56, putative, expressed -
10 Sobic.009G088800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@aminotransferase domain containing protein, putative, expressed K18482: 4-amino-4-deoxychorismate lyase
11 Sobic.004G096700 xaa-Pro dipeptidase, putative, expressed K14213: Xaa-Pro dipeptidase
12 Sobic.002G295700 transporter family protein, putative, expressed -
13 Sobic.003G346500 similar to Nuclear transcription factor Y subunit B-3(PubMedID : 29862293)@tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed K08065: NFYB, nuclear transcription Y subunit beta
14 Sobic.009G050500 nifU, putative, expressed -
15 Sobic.009G241000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@3 Ketoacyl CoA synthetase 11 KCS11 (At)(PubMedID : 27208977)@3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
16 Sobic.002G265300 acyl-coenzyme A thioesterase 10, mitochondrial precursor, putative, expressed K17361: acyl-coenzyme A thioesterase 9
17 Sobic.010G095400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@urea active transporter, putative, expressed -
18 Sobic.010G171000 phospholipid-transporting ATPase 4, putative, expressed K01530: phospholipid-translocating ATPase
19 Sobic.008G140400 diacylglycerol kinase 1, putative, expressed K00901: dgkA, diacylglycerol kinase (ATP)
20 Sobic.001G501900 appr-1-p processing enzyme family protein, putative, expressed -


Gene co-expression network
sample Sobic002G139600 Sobic002G139600 Sobic003G377000 Sobic003G377000 Sobic002G139600--Sobic003G377000 Sobic002G007800 Sobic002G007800 Sobic002G139600--Sobic002G007800 Sobic002G431000 Sobic002G431000 Sobic002G139600--Sobic002G431000 Sobic004G198800 Sobic004G198800 Sobic002G139600--Sobic004G198800 Sobic002G160100 Sobic002G160100 Sobic002G139600--Sobic002G160100 Sobic001G179800 Sobic001G179800 Sobic002G139600--Sobic001G179800 Sobic004G192800 Sobic004G192800 Sobic002G139600--Sobic004G192800 SobicK043400 SobicK043400 Sobic002G139600--SobicK043400 Sobic003G308800 Sobic003G308800 Sobic002G139600--Sobic003G308800 Sobic002G265300 Sobic002G265300 Sobic003G377000--Sobic002G265300 Sobic003G377000--Sobic002G431000 Sobic003G377000--Sobic002G139600 Sobic005G177700 Sobic005G177700 Sobic003G377000--Sobic005G177700 Sobic007G026800 Sobic007G026800 Sobic003G377000--Sobic007G026800 Sobic010G184300 Sobic010G184300 Sobic003G377000--Sobic010G184300 Sobic004G093600 Sobic004G093600 Sobic003G377000--Sobic004G093600 Sobic004G096700 Sobic004G096700 Sobic003G377000--Sobic004G096700 Sobic003G377000--SobicK043400 Sobic002G304700 Sobic002G304700 Sobic002G007800--Sobic002G304700 Sobic009G106700 Sobic009G106700 Sobic002G007800--Sobic009G106700 Sobic010G160300 Sobic010G160300 Sobic002G007800--Sobic010G160300 Sobic010G095400 Sobic010G095400 Sobic002G007800--Sobic010G095400 Sobic006G166400 Sobic006G166400 Sobic002G007800--Sobic006G166400 Sobic001G501900 Sobic001G501900 Sobic002G007800--Sobic001G501900 Sobic002G057400 Sobic002G057400 Sobic002G007800--Sobic002G057400 Sobic003G211800 Sobic003G211800 Sobic002G007800--Sobic003G211800 Sobic003G385300 Sobic003G385300 Sobic002G007800--Sobic003G385300 Sobic002G431000--Sobic010G184300 Sobic002G295700 Sobic002G295700 Sobic002G431000--Sobic002G295700 Sobic002G431000--Sobic003G377000 Sobic001G457700 Sobic001G457700 Sobic002G431000--Sobic001G457700 Sobic004G236200 Sobic004G236200 Sobic002G431000--Sobic004G236200 Sobic002G431000--Sobic005G177700 Sobic004G112900 Sobic004G112900 Sobic002G431000--Sobic004G112900 Sobic007G056100 Sobic007G056100 Sobic002G431000--Sobic007G056100 Sobic010G064600 Sobic010G064600 Sobic002G431000--Sobic010G064600 Sobic004G198800--Sobic002G139600 Sobic004G198800--Sobic003G308800 Sobic004G198800--Sobic006G166400 Sobic004G198800--Sobic003G377000 Sobic004G198800--Sobic002G007800 Sobic004G256700 Sobic004G256700 Sobic004G198800--Sobic004G256700 Sobic001G387200 Sobic001G387200 Sobic004G198800--Sobic001G387200 Sobic006G120900 Sobic006G120900 Sobic004G198800--Sobic006G120900 Sobic003G129900 Sobic003G129900 Sobic004G198800--Sobic003G129900 Sobic002G160100--Sobic002G007800 Sobic002G160100--Sobic010G095400 Sobic001G490950 Sobic001G490950 Sobic002G160100--Sobic001G490950 Sobic004G032600 Sobic004G032600 Sobic002G160100--Sobic004G032600 Sobic006G219900 Sobic006G219900 Sobic002G160100--Sobic006G219900 Sobic002G368100 Sobic002G368100 Sobic002G160100--Sobic002G368100 Sobic002G160100--Sobic001G179800 Sobic003G392275 Sobic003G392275 Sobic002G160100--Sobic003G392275 Sobic002G102300 Sobic002G102300 Sobic002G160100--Sobic002G102300 Sobic001G179800--Sobic002G007800 Sobic001G179800--Sobic002G057400 Sobic001G179800--Sobic002G160100 Sobic001G179800--Sobic006G219900 Sobic001G179800--Sobic001G501900 Sobic001G179800--Sobic002G304700 Sobic001G179800--Sobic010G160300 Sobic001G179800--Sobic002G139600 Sobic003G117800 Sobic003G117800 Sobic001G179800--Sobic003G117800 Sobic004G192800--Sobic002G431000 Sobic004G192800--Sobic002G139600 Sobic009G088800 Sobic009G088800 Sobic004G192800--Sobic009G088800 Sobic005G044300 Sobic005G044300 Sobic004G192800--Sobic005G044300 Sobic001G057600 Sobic001G057600 Sobic004G192800--Sobic001G057600 Sobic004G159000 Sobic004G159000 Sobic004G192800--Sobic004G159000 Sobic001G118300 Sobic001G118300 Sobic004G192800--Sobic001G118300 Sobic004G192800--Sobic003G129900 Sobic003G196600 Sobic003G196600 Sobic004G192800--Sobic003G196600 Sobic001G378800 Sobic001G378800 SobicK043400--Sobic001G378800 Sobic001G047600 Sobic001G047600 SobicK043400--Sobic001G047600 Sobic009G054600 Sobic009G054600 SobicK043400--Sobic009G054600 SobicK043400--Sobic002G295700 Sobic002G117600 Sobic002G117600 SobicK043400--Sobic002G117600 Sobic006G012700 Sobic006G012700 SobicK043400--Sobic006G012700 Sobic010G065200 Sobic010G065200 SobicK043400--Sobic010G065200 SobicK043400--Sobic004G093600 SobicK043400--Sobic004G096700 Sobic004G176200 Sobic004G176200 Sobic003G308800--Sobic004G176200 Sobic003G308800--Sobic006G120900 Sobic003G380300 Sobic003G380300 Sobic003G308800--Sobic003G380300 Sobic003G308800--Sobic003G129900 Sobic003G308800--Sobic001G387200 Sobic003G308800--Sobic006G166400 Sobic001G408400 Sobic001G408400 Sobic003G308800--Sobic001G408400 Sobic003G308800--Sobic010G095400 Sobic003G308800--Sobic002G007800
Octagon: transcription factors


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