Gene annotation
Transcriptome id Sobic.004G198800.1
Synonym Sb04g024540,
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
Up-reguralion under heat (PubMedID : 24916767)
expressed protein
UniProt C5XWF9
Pfam PF09423
Panther DB PTHR33987
NCBI CDD -
KEGG Orthology K01113; alkaline phosphatase D
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G42370 : Calcineurin-like metallo-phosphoesterase superfamily protein
RAP-DB (Rice) LOC_Os02g37910.1 : expressed protein
MaizeGDB (Corn) Zm00025a021343
Brachypodium KQK00124 , KQK00125 , KQK00123
Barley -
Wheat TraesCS6D02G190500 , TraesCS6B02G225100 , TraesCS6A02G205300 , TraesCS6B02G225100
Populus -


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cDNA sequences
Sobic.004G198800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G139600 2-phosphoglycerate kinase-related, putative, expressed -
2 Sobic.003G308800 transmembrane protein 56, putative, expressed -
3 Sobic.006G166400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@ELMO/CED-12 family protein, putative, expressed -
4 Sobic.003G377000 powdery mildew resistant protein 5, putative, expressed -
5 Sobic.002G007800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transcription factor jumonji, putative, expressed K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
6 Sobic.004G256700 ZAC, putative, expressed K12486: stromal membrane-associated protein
7 Sobic.001G387200 expressed protein -
8 Sobic.006G120900 dehydrogenase, putative, expressed K00030: isocitrate dehydrogenase (NAD+)
9 Sobic.003G129900 dehydrogenase, putative, expressed K00030: isocitrate dehydrogenase (NAD+)
10 Sobic.002G265300 acyl-coenzyme A thioesterase 10, mitochondrial precursor, putative, expressed K17361: acyl-coenzyme A thioesterase 9
11 Sobic.003G306500 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsGH3.2 - Probable indole-3-acetic acid-amido synthetase, expressed K14487: auxin responsive GH3 gene family
12 Sobic.009G241000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@3 Ketoacyl CoA synthetase 11 KCS11 (At)(PubMedID : 27208977)@3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
13 Sobic.003G160500 thiamin pyrophosphokinase 1, putative, expressed K00949: thiN, TPK1, thiamine pyrophosphokinase
14 Sobic.004G093600 2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed K00627: DLAT, aceF, pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase)
15 Sobic.004G176200 SacI homology domain containing protein, expressed -
16 Sobic.002G095100 RNA-binding region RNP-1, putative, expressed -
17 Sobic.009G054600 -(PubMedID : 26976818)@dihydrolipoyl dehydrogenase, mitochondrial precursor, putative, expressed K00382: DLD, lpd, dihydrolipoamide dehydrogenase
18 Sobic.009G173100 Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.24 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
19 Sobic.009G088800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@aminotransferase domain containing protein, putative, expressed K18482: 4-amino-4-deoxychorismate lyase
20 Sobic.002G431000 transporter, putative, expressed -


Gene co-expression network
sample Sobic004G198800 Sobic004G198800 Sobic002G139600 Sobic002G139600 Sobic004G198800--Sobic002G139600 Sobic003G308800 Sobic003G308800 Sobic004G198800--Sobic003G308800 Sobic006G166400 Sobic006G166400 Sobic004G198800--Sobic006G166400 Sobic003G377000 Sobic003G377000 Sobic004G198800--Sobic003G377000 Sobic002G007800 Sobic002G007800 Sobic004G198800--Sobic002G007800 Sobic004G256700 Sobic004G256700 Sobic004G198800--Sobic004G256700 Sobic001G387200 Sobic001G387200 Sobic004G198800--Sobic001G387200 Sobic006G120900 Sobic006G120900 Sobic004G198800--Sobic006G120900 Sobic003G129900 Sobic003G129900 Sobic004G198800--Sobic003G129900 Sobic002G139600--Sobic003G377000 Sobic002G139600--Sobic002G007800 Sobic002G431000 Sobic002G431000 Sobic002G139600--Sobic002G431000 Sobic002G139600--Sobic004G198800 Sobic002G160100 Sobic002G160100 Sobic002G139600--Sobic002G160100 Sobic001G179800 Sobic001G179800 Sobic002G139600--Sobic001G179800 Sobic004G192800 Sobic004G192800 Sobic002G139600--Sobic004G192800 SobicK043400 SobicK043400 Sobic002G139600--SobicK043400 Sobic002G139600--Sobic003G308800 Sobic004G176200 Sobic004G176200 Sobic003G308800--Sobic004G176200 Sobic003G308800--Sobic006G120900 Sobic003G380300 Sobic003G380300 Sobic003G308800--Sobic003G380300 Sobic003G308800--Sobic003G129900 Sobic003G308800--Sobic001G387200 Sobic003G308800--Sobic006G166400 Sobic001G408400 Sobic001G408400 Sobic003G308800--Sobic001G408400 Sobic010G095400 Sobic010G095400 Sobic003G308800--Sobic010G095400 Sobic003G308800--Sobic002G007800 Sobic003G306500 Sobic003G306500 Sobic006G166400--Sobic003G306500 Sobic001G367301 Sobic001G367301 Sobic006G166400--Sobic001G367301 Sobic006G080700 Sobic006G080700 Sobic006G166400--Sobic006G080700 Sobic004G134900 Sobic004G134900 Sobic006G166400--Sobic004G134900 Sobic005G110460 Sobic005G110460 Sobic006G166400--Sobic005G110460 Sobic001G225800 Sobic001G225800 Sobic006G166400--Sobic001G225800 Sobic006G267100 Sobic006G267100 Sobic006G166400--Sobic006G267100 Sobic004G074600 Sobic004G074600 Sobic006G166400--Sobic004G074600 Sobic001G103100 Sobic001G103100 Sobic006G166400--Sobic001G103100 Sobic002G265300 Sobic002G265300 Sobic003G377000--Sobic002G265300 Sobic003G377000--Sobic002G431000 Sobic003G377000--Sobic002G139600 Sobic005G177700 Sobic005G177700 Sobic003G377000--Sobic005G177700 Sobic007G026800 Sobic007G026800 Sobic003G377000--Sobic007G026800 Sobic010G184300 Sobic010G184300 Sobic003G377000--Sobic010G184300 Sobic004G093600 Sobic004G093600 Sobic003G377000--Sobic004G093600 Sobic004G096700 Sobic004G096700 Sobic003G377000--Sobic004G096700 Sobic003G377000--SobicK043400 Sobic002G304700 Sobic002G304700 Sobic002G007800--Sobic002G304700 Sobic009G106700 Sobic009G106700 Sobic002G007800--Sobic009G106700 Sobic010G160300 Sobic010G160300 Sobic002G007800--Sobic010G160300 Sobic002G007800--Sobic010G095400 Sobic002G007800--Sobic006G166400 Sobic001G501900 Sobic001G501900 Sobic002G007800--Sobic001G501900 Sobic002G057400 Sobic002G057400 Sobic002G007800--Sobic002G057400 Sobic003G211800 Sobic003G211800 Sobic002G007800--Sobic003G211800 Sobic003G385300 Sobic003G385300 Sobic002G007800--Sobic003G385300 Sobic004G256700--Sobic003G129900 Sobic005G019100 Sobic005G019100 Sobic004G256700--Sobic005G019100 Sobic004G256700--Sobic001G387200 Sobic004G256700--Sobic006G120900 Sobic004G256700--Sobic004G093600 Sobic003G196600 Sobic003G196600 Sobic004G256700--Sobic003G196600 Sobic003G274200 Sobic003G274200 Sobic004G256700--Sobic003G274200 Sobic004G173700 Sobic004G173700 Sobic004G256700--Sobic004G173700 Sobic001G518500 Sobic001G518500 Sobic004G256700--Sobic001G518500 Sobic001G387200--Sobic003G129900 Sobic001G387200--Sobic004G093600 Sobic001G387200--Sobic006G120900 Sobic001G387200--Sobic004G173700 Sobic008G018300 Sobic008G018300 Sobic001G387200--Sobic008G018300 Sobic001G387200--Sobic004G256700 Sobic002G255400 Sobic002G255400 Sobic001G387200--Sobic002G255400 Sobic002G420600 Sobic002G420600 Sobic001G387200--Sobic002G420600 Sobic001G387200--Sobic005G019100 Sobic006G120900--Sobic004G173700 Sobic003G234500 Sobic003G234500 Sobic006G120900--Sobic003G234500 Sobic003G089100 Sobic003G089100 Sobic006G120900--Sobic003G089100 Sobic006G120900--Sobic003G129900 Sobic006G120900--Sobic003G380300 Sobic003G212000 Sobic003G212000 Sobic006G120900--Sobic003G212000 Sobic006G120900--Sobic001G387200 Sobic006G120900--Sobic002G420600 Sobic003G137600 Sobic003G137600 Sobic006G120900--Sobic003G137600 Sobic003G129900--Sobic001G387200 Sobic003G129900--Sobic004G093600 Sobic003G129900--Sobic006G120900 Sobic003G129900--Sobic005G019100 Sobic003G129900--Sobic004G173700 Sobic003G129900--Sobic004G256700 Sobic003G129900--Sobic002G420600 Sobic003G034900 Sobic003G034900 Sobic003G129900--Sobic003G034900 Sobic003G129900--Sobic001G518500
Octagon: transcription factors


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