Gene annotation
Transcriptome id Sobic.002G095100.1
Synonym Sb02g007840
Functional annotation RNA-binding region RNP-1, putative, expressed
UniProt A0A1B6QA59
Pfam -
Panther DB PTHR36309 PTHR36309:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G05970 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os07g15270.1 : RNA-binding region RNP-1, putative, expressed
MaizeGDB (Corn) Zm00025a045537
Brachypodium -
Barley -
Wheat TraesCS2D02G302300 , TraesCS2D02G302300 , TraesCS2A02G303800 , TraesCS2D02G302300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G304700 RFT1, putative, expressed K06316: oligosaccharide translocation protein RFT1
2 Sobic.002G057400 expressed protein K16586: HAUS augmin-like complex subunit 3
3 Sobic.010G160300 RNA recognition motif containing protein, putative, expressed -
4 Sobic.002G007800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transcription factor jumonji, putative, expressed K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
5 Sobic.006G156400 double-stranded RNA binding motif containing protein, expressed K18998: RNA polymerase II C-terminal domain phosphatase-like 1/2
6 Sobic.002G060400 OsFBX237 - F-box domain containing protein, expressed -
7 Sobic.001G501900 appr-1-p processing enzyme family protein, putative, expressed -
8 Sobic.001G404900 ubiquitin-activating enzyme, putative, expressed K03178: UBE1, ubiquitin-activating enzyme E1
9 Sobic.007G086600 indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed K01609: indole-3-glycerol phosphate synthase
10 Sobic.005G063200 expressed protein -
11 Sobic.004G077300 guanine nucleotide exchange family protein, putative, expressed K18442: ARFGEF, brefeldin A-inhibited guanine nucleotide-exchange protein
12 Sobic.009G040250 - -
13 Sobic.003G411300 expressed protein -
14 Sobic.004G350700 kelch repeat protein, putative, expressed -
15 Sobic.003G160500 thiamin pyrophosphokinase 1, putative, expressed K00949: thiN, TPK1, thiamine pyrophosphokinase
16 Sobic.001G073700 tubulin/FtsZ domain containing protein, putative, expressed K07374: tubulin alpha
17 Sobic.009G106700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
18 Sobic.005G225100 expressed protein -
19 Sobic.007G060100 expressed protein -
20 Sobic.005G048600 expressed protein -


Gene co-expression network
sample Sobic002G095100 Sobic002G095100 Sobic002G304700 Sobic002G304700 Sobic002G095100--Sobic002G304700 Sobic002G057400 Sobic002G057400 Sobic002G095100--Sobic002G057400 Sobic010G160300 Sobic010G160300 Sobic002G095100--Sobic010G160300 Sobic002G007800 Sobic002G007800 Sobic002G095100--Sobic002G007800 Sobic006G156400 Sobic006G156400 Sobic002G095100--Sobic006G156400 Sobic002G060400 Sobic002G060400 Sobic002G095100--Sobic002G060400 Sobic001G501900 Sobic001G501900 Sobic002G095100--Sobic001G501900 Sobic001G404900 Sobic001G404900 Sobic002G095100--Sobic001G404900 Sobic007G086600 Sobic007G086600 Sobic002G095100--Sobic007G086600 Sobic002G304700--Sobic010G160300 Sobic002G304700--Sobic006G156400 Sobic001G280500 Sobic001G280500 Sobic002G304700--Sobic001G280500 Sobic003G385300 Sobic003G385300 Sobic002G304700--Sobic003G385300 Sobic001G149000 Sobic001G149000 Sobic002G304700--Sobic001G149000 Sobic004G077300 Sobic004G077300 Sobic002G304700--Sobic004G077300 Sobic002G304700--Sobic002G007800 Sobic009G106700 Sobic009G106700 Sobic002G304700--Sobic009G106700 Sobic005G063200 Sobic005G063200 Sobic002G304700--Sobic005G063200 Sobic003G402800 Sobic003G402800 Sobic002G057400--Sobic003G402800 Sobic002G057400--Sobic002G304700 Sobic005G225100 Sobic005G225100 Sobic002G057400--Sobic005G225100 Sobic002G057400--Sobic003G385300 Sobic002G057400--Sobic010G160300 Sobic008G055500 Sobic008G055500 Sobic002G057400--Sobic008G055500 Sobic002G057400--Sobic002G007800 Sobic002G057400--Sobic005G063200 Sobic002G057400--Sobic001G501900 Sobic010G160300--Sobic002G304700 Sobic010G160300--Sobic001G280500 Sobic010G160300--Sobic005G063200 Sobic001G114200 Sobic001G114200 Sobic010G160300--Sobic001G114200 Sobic010G160300--Sobic001G501900 Sobic004G350700 Sobic004G350700 Sobic010G160300--Sobic004G350700 Sobic010G160300--Sobic002G007800 Sobic003G117800 Sobic003G117800 Sobic010G160300--Sobic003G117800 Sobic010G160300--Sobic001G149000 Sobic002G007800--Sobic002G304700 Sobic002G007800--Sobic009G106700 Sobic002G007800--Sobic010G160300 Sobic010G095400 Sobic010G095400 Sobic002G007800--Sobic010G095400 Sobic006G166400 Sobic006G166400 Sobic002G007800--Sobic006G166400 Sobic002G007800--Sobic001G501900 Sobic002G007800--Sobic002G057400 Sobic003G211800 Sobic003G211800 Sobic002G007800--Sobic003G211800 Sobic002G007800--Sobic003G385300 Sobic009G201000 Sobic009G201000 Sobic006G156400--Sobic009G201000 Sobic008G141100 Sobic008G141100 Sobic006G156400--Sobic008G141100 Sobic009G178400 Sobic009G178400 Sobic006G156400--Sobic009G178400 Sobic009G121200 Sobic009G121200 Sobic006G156400--Sobic009G121200 Sobic009G202000 Sobic009G202000 Sobic006G156400--Sobic009G202000 Sobic005G048500 Sobic005G048500 Sobic006G156400--Sobic005G048500 Sobic001G387300 Sobic001G387300 Sobic006G156400--Sobic001G387300 Sobic001G073700 Sobic001G073700 Sobic006G156400--Sobic001G073700 Sobic009G113500 Sobic009G113500 Sobic006G156400--Sobic009G113500 Sobic002G304500 Sobic002G304500 Sobic002G060400--Sobic002G304500 Sobic004G064800 Sobic004G064800 Sobic002G060400--Sobic004G064800 Sobic005G201200 Sobic005G201200 Sobic002G060400--Sobic005G201200 Sobic010G255400 Sobic010G255400 Sobic002G060400--Sobic010G255400 Sobic008G041300 Sobic008G041300 Sobic002G060400--Sobic008G041300 Sobic001G076600 Sobic001G076600 Sobic002G060400--Sobic001G076600 Sobic007G060100 Sobic007G060100 Sobic002G060400--Sobic007G060100 Sobic002G015700 Sobic002G015700 Sobic002G060400--Sobic002G015700 Sobic002G158300 Sobic002G158300 Sobic002G060400--Sobic002G158300 Sobic001G501900--Sobic004G350700 Sobic001G501900--Sobic003G385300 Sobic001G501900--Sobic008G055500 Sobic001G501900--Sobic002G304700 Sobic001G501900--Sobic010G160300 Sobic001G501900--Sobic004G077300 Sobic001G424800 Sobic001G424800 Sobic001G501900--Sobic001G424800 Sobic008G152700 Sobic008G152700 Sobic001G501900--Sobic008G152700 Sobic001G501900--Sobic003G117800 Sobic009G116900 Sobic009G116900 Sobic001G404900--Sobic009G116900 Sobic001G342900 Sobic001G342900 Sobic001G404900--Sobic001G342900 Sobic009G128500 Sobic009G128500 Sobic001G404900--Sobic009G128500 Sobic002G198100 Sobic002G198100 Sobic001G404900--Sobic002G198100 Sobic003G235100 Sobic003G235100 Sobic001G404900--Sobic003G235100 Sobic001G404900--Sobic002G095100 Sobic001G532400 Sobic001G532400 Sobic001G404900--Sobic001G532400 Sobic001G356100 Sobic001G356100 Sobic001G404900--Sobic001G356100 Sobic009G217400 Sobic009G217400 Sobic001G404900--Sobic009G217400 Sobic003G004800 Sobic003G004800 Sobic007G086600--Sobic003G004800 Sobic001G117900 Sobic001G117900 Sobic007G086600--Sobic001G117900 Sobic005G048600 Sobic005G048600 Sobic007G086600--Sobic005G048600 Sobic003G293400 Sobic003G293400 Sobic007G086600--Sobic003G293400 Sobic003G022000 Sobic003G022000 Sobic007G086600--Sobic003G022000 Sobic002G348400 Sobic002G348400 Sobic007G086600--Sobic002G348400 Sobic001G433600 Sobic001G433600 Sobic007G086600--Sobic001G433600 Sobic002G193500 Sobic002G193500 Sobic007G086600--Sobic002G193500 Sobic007G086600--Sobic009G201000
Octagon: transcription factors


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