Gene annotation
Transcriptome id Sobic.002G423000.2
Synonym Sb02g043390
Functional annotation zinc finger family protein, putative, expressed
UniProt A0A1W0W7X9
Pfam PF14624 PF00092
Panther DB PTHR10579 PTHR10579:SF51
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G60710 : Zinc finger (C3HC4-type RING finger) family protein
RAP-DB (Rice) LOC_Os08g03270.1 : zinc finger family protein, putative, expressed
MaizeGDB (Corn) Zm00025a035563 , Zm00025a015470
Brachypodium KQK03828
Barley HORVU5Hr1G076190.1 , HORVU5Hr1G076190.2
Wheat TraesCS2B02G515000 , TraesCS3A02G393700 , TraesCS5B02G284200 , TraesCS2D02G459400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G044300 exo70 exocyst complex subunit, putative, expressed K07195: EXOC7, exocyst complex component 7
2 Sobic.001G118300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@GLTP domain containing protein, putative, expressed -
3 Sobic.009G088800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@aminotransferase domain containing protein, putative, expressed K18482: 4-amino-4-deoxychorismate lyase
4 Sobic.007G212100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@AGC_PVPK_like_CDK8.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
5 Sobic.001G217500 transporter-related, putative, expressed K15285: solute carrier family 35, member E3
6 Sobic.004G173700 SLL1 protein, putative, expressed -
7 Sobic.010G216400 expressed protein -
8 Sobic.003G218400 cytochrome c oxidase subunit 5B, mitochondrial precursor, putative, expressed K02265: cytochrome c oxidase subunit 5b
9 Sobic.003G129900 dehydrogenase, putative, expressed K00030: isocitrate dehydrogenase (NAD+)
10 Sobic.004G159400 hydrolase, NUDIX family, domain containing protein, expressed K07766: diphosphoinositol-polyphosphate diphosphatase
11 Sobic.008G016700 expressed protein -
12 Sobic.008G112600 guanylate kinase, putative, expressed K00942: E2.7.4.8, guanylate kinase
13 Sobic.009G176500 similar to Putative uncharacterized protein(PubMedID : 29862293)@harpin-induced protein 1 domain containing protein, expressed -
14 Sobic.009G176400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
15 Sobic.005G019100 TRAF-type zinc finger family protein, expressed -
16 Sobic.008G006300 prenylated rab acceptor, putative, expressed -
17 Sobic.006G039600 expressed protein -
18 Sobic.001G387200 expressed protein -
19 Sobic.003G139200 - -
20 Sobic.001G365700 OsRhmbd13 - Putative Rhomboid homologue, expressed -


Gene co-expression network
sample Sobic002G423000 Sobic002G423000 Sobic005G044300 Sobic005G044300 Sobic002G423000--Sobic005G044300 Sobic001G118300 Sobic001G118300 Sobic002G423000--Sobic001G118300 Sobic009G088800 Sobic009G088800 Sobic002G423000--Sobic009G088800 Sobic007G212100 Sobic007G212100 Sobic002G423000--Sobic007G212100 Sobic001G217500 Sobic001G217500 Sobic002G423000--Sobic001G217500 Sobic004G173700 Sobic004G173700 Sobic002G423000--Sobic004G173700 Sobic010G216400 Sobic010G216400 Sobic002G423000--Sobic010G216400 Sobic003G218400 Sobic003G218400 Sobic002G423000--Sobic003G218400 Sobic003G129900 Sobic003G129900 Sobic002G423000--Sobic003G129900 Sobic008G018300 Sobic008G018300 Sobic005G044300--Sobic008G018300 Sobic004G159000 Sobic004G159000 Sobic005G044300--Sobic004G159000 Sobic001G387200 Sobic001G387200 Sobic005G044300--Sobic001G387200 Sobic004G039400 Sobic004G039400 Sobic005G044300--Sobic004G039400 Sobic002G420600 Sobic002G420600 Sobic005G044300--Sobic002G420600 Sobic004G353500 Sobic004G353500 Sobic005G044300--Sobic004G353500 Sobic003G335300 Sobic003G335300 Sobic005G044300--Sobic003G335300 Sobic003G016300 Sobic003G016300 Sobic005G044300--Sobic003G016300 Sobic001G038000 Sobic001G038000 Sobic005G044300--Sobic001G038000 Sobic005G019100 Sobic005G019100 Sobic001G118300--Sobic005G019100 Sobic006G039600 Sobic006G039600 Sobic001G118300--Sobic006G039600 Sobic004G256700 Sobic004G256700 Sobic001G118300--Sobic004G256700 Sobic010G262300 Sobic010G262300 Sobic001G118300--Sobic010G262300 Sobic003G196600 Sobic003G196600 Sobic001G118300--Sobic003G196600 Sobic010G031000 Sobic010G031000 Sobic001G118300--Sobic010G031000 Sobic004G159400 Sobic004G159400 Sobic001G118300--Sobic004G159400 Sobic001G118300--Sobic004G159000 Sobic003G273000 Sobic003G273000 Sobic001G118300--Sobic003G273000 Sobic001G057600 Sobic001G057600 Sobic009G088800--Sobic001G057600 Sobic009G088800--Sobic005G044300 Sobic004G192800 Sobic004G192800 Sobic009G088800--Sobic004G192800 Sobic009G088800--Sobic001G118300 Sobic009G088800--Sobic004G256700 Sobic002G139600 Sobic002G139600 Sobic009G088800--Sobic002G139600 Sobic009G088800--Sobic003G129900 Sobic009G088800--Sobic002G423000 Sobic003G273900 Sobic003G273900 Sobic009G088800--Sobic003G273900 Sobic009G176400 Sobic009G176400 Sobic007G212100--Sobic009G176400 Sobic007G212100--Sobic004G173700 Sobic003G137600 Sobic003G137600 Sobic007G212100--Sobic003G137600 Sobic004G232500 Sobic004G232500 Sobic007G212100--Sobic004G232500 Sobic010G250300 Sobic010G250300 Sobic007G212100--Sobic010G250300 Sobic004G232700 Sobic004G232700 Sobic007G212100--Sobic004G232700 Sobic003G139200 Sobic003G139200 Sobic007G212100--Sobic003G139200 Sobic004G247500 Sobic004G247500 Sobic007G212100--Sobic004G247500 Sobic004G165200 Sobic004G165200 Sobic007G212100--Sobic004G165200 Sobic004G257000 Sobic004G257000 Sobic001G217500--Sobic004G257000 Sobic001G031900 Sobic001G031900 Sobic001G217500--Sobic001G031900 Sobic002G395000 Sobic002G395000 Sobic001G217500--Sobic002G395000 Sobic001G217500--Sobic003G218400 Sobic007G013900 Sobic007G013900 Sobic001G217500--Sobic007G013900 Sobic004G170400 Sobic004G170400 Sobic001G217500--Sobic004G170400 Sobic010G059300 Sobic010G059300 Sobic001G217500--Sobic010G059300 Sobic002G078300 Sobic002G078300 Sobic001G217500--Sobic002G078300 Sobic006G058900 Sobic006G058900 Sobic001G217500--Sobic006G058900 Sobic004G173700--Sobic003G137600 Sobic006G120900 Sobic006G120900 Sobic004G173700--Sobic006G120900 Sobic004G173700--Sobic002G420600 Sobic004G173700--Sobic001G387200 Sobic001G365700 Sobic001G365700 Sobic004G173700--Sobic001G365700 Sobic004G173700--Sobic003G129900 Sobic004G173700--Sobic007G212100 Sobic001G303900 Sobic001G303900 Sobic004G173700--Sobic001G303900 Sobic004G173700--Sobic008G018300 Sobic010G216400--Sobic001G365700 Sobic009G069600 Sobic009G069600 Sobic010G216400--Sobic009G069600 Sobic010G216400--Sobic004G232500 Sobic010G216400--Sobic010G031000 Sobic010G216400--Sobic003G273000 Sobic010G216400--Sobic009G176400 Sobic010G216400--Sobic003G335300 Sobic010G216400--Sobic004G173700 Sobic001G482800 Sobic001G482800 Sobic010G216400--Sobic001G482800 Sobic001G047800 Sobic001G047800 Sobic003G218400--Sobic001G047800 Sobic004G260200 Sobic004G260200 Sobic003G218400--Sobic004G260200 Sobic002G309700 Sobic002G309700 Sobic003G218400--Sobic002G309700 Sobic002G418400 Sobic002G418400 Sobic003G218400--Sobic002G418400 Sobic003G215700 Sobic003G215700 Sobic003G218400--Sobic003G215700 Sobic001G404800 Sobic001G404800 Sobic003G218400--Sobic001G404800 Sobic003G218400--Sobic007G013900 Sobic003G218400--Sobic004G170400 Sobic001G074700 Sobic001G074700 Sobic003G218400--Sobic001G074700 Sobic003G129900--Sobic001G387200 Sobic004G093600 Sobic004G093600 Sobic003G129900--Sobic004G093600 Sobic003G129900--Sobic006G120900 Sobic003G129900--Sobic005G019100 Sobic003G129900--Sobic004G173700 Sobic003G129900--Sobic004G256700 Sobic003G129900--Sobic002G420600 Sobic003G034900 Sobic003G034900 Sobic003G129900--Sobic003G034900 Sobic001G518500 Sobic001G518500 Sobic003G129900--Sobic001G518500
Octagon: transcription factors


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