Gene annotation
| Transcriptome id | Sobic.001G057600.1 |
|---|---|
| Synonym | Sb01g005240 |
| Functional annotation | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)" (PubMedID : 27586543) stem-specific protein TSJT1, putative, expressed |
| UniProt | C5WX77 |
| Pfam | PF13537 |
| Panther DB | PTHR11772 PTHR11772:SF20 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT3G22850 : Aluminium induced protein with YGL and LRDR motifs |
|---|---|
| RAP-DB (Rice) | LOC_Os03g58170.1 : stem-specific protein TSJT1, putative, expressed |
| MaizeGDB (Corn) | Zm00025a008558 |
| Brachypodium | - |
| Barley | HORVU5Hr1G105840.4 |
| Wheat | TraesCS5D02G445900 , TraesCS5A02G438800 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.009G088800 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@aminotransferase domain containing protein, putative, expressed | K18482: 4-amino-4-deoxychorismate lyase |
| 2 | Sobic.006G118400 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@gibberellin 20 oxidase 2, putative, expressed | - |
| 3 | Sobic.004G186300 | protein phosphotase protein, putative, expressed | - |
| 4 | Sobic.001G118300 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@GLTP domain containing protein, putative, expressed | - |
| 5 | Sobic.004G192800 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@mitochondrial prohibitin complex protein 1, putative, expressed | K17080: prohibitin 1 |
| 6 | Sobic.005G019100 | TRAF-type zinc finger family protein, expressed | - |
| 7 | Sobic.009G050000 | Ser/Thr protein phosphatase family protein, putative, expressed | K06269: serine/threonine-protein phosphatase PP1 catalytic subunit |
| 8 | Sobic.005G044300 | exo70 exocyst complex subunit, putative, expressed | K07195: EXOC7, exocyst complex component 7 |
| 9 | Sobic.008G129000 | phosphatidic acid phosphatase-related, putative, expressed | - |
| 10 | Sobic.004G256700 | ZAC, putative, expressed | K12486: stromal membrane-associated protein |
| 11 | Sobic.003G196600 | expressed protein | - |
| 12 | Sobic.003G311700 | cyclase/dehydrase family protein, expressed | K18588: coenzyme Q-binding protein COQ10 |
| 13 | Sobic.001G408400 | phosphatase, putative, expressed | K07252: dolichyldiphosphatase |
| 14 | Sobic.003G043800 | BT1 family protein, putative, expressed | - |
| 15 | Sobic.003G005100 | seven in absentia protein family domain containing protein, expressed | K04506: E3 ubiquitin-protein ligase SIAH1 |
| 16 | Sobic.010G266800 | DUF803 domain containing, putative, expressed | - |
| 17 | Sobic.006G219900 | csAtPR5, putative, expressed | - |
| 18 | Sobic.002G401700 | TRAF-type zinc finger domain-containing protein 1, putative, expressed | - |
| 19 | Sobic.003G130700 | zinc finger, C3HC4 type domain containing protein, expressed | K11982: E3 ubiquitin-protein ligase RNF115/126 |
| 20 | Sobic.002G034700 | similar to Putative uncharacterized protein(PubMedID : 29862293)@CAMK_KIN1/SNF1/Nim1_like.28 - CAMK includes calcium/calmodulin depedent protein kinases, expressed | - |
Gene co-expression network
Octagon: transcription factors
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