Gene annotation
Transcriptome id Sobic.002G366800.3,Sobic.002G366800.2,Sobic.002G366800.1
Synonym Sb02g038590, GR-RBP3
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt A0A1B6QFH0
Pfam PF00076
Panther DB PTHR24012 PTHR24012:SF384 PTHR24012:SF384 PTHR24012
NCBI CDD -
KEGG Orthology K12741; heterogeneous nuclear ribonucleoprotein A1/A3
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT5G61030 : glycine-rich RNA-binding protein 3
RAP-DB (Rice) LOC_Os07g41120.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a048686
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G018300 expressed protein K17402: small subunit ribosomal protein S23
2 Sobic.002G034700 similar to Putative uncharacterized protein(PubMedID : 29862293)@CAMK_KIN1/SNF1/Nim1_like.28 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
3 Sobic.010G225201 - -
4 Sobic.003G113400 ribosomal protein L3, putative, expressed K02906: RP-L3, MRPL3, large subunit ribosomal protein L3
5 Sobic.002G397900 39S ribosomal protein L46, mitochondrial precursor, putative, expressed K17427: large subunit ribosomal protein L46
6 Sobic.003G129900 dehydrogenase, putative, expressed K00030: isocitrate dehydrogenase (NAD+)
7 Sobic.005G044300 exo70 exocyst complex subunit, putative, expressed K07195: EXOC7, exocyst complex component 7
8 Sobic.002G259700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transketolase, putative, expressed K00162: PDHB, pyruvate dehydrogenase E1 component beta subunit
9 Sobic.001G387200 expressed protein -
10 Sobic.003G167000 protein phosphotase protein, putative, expressed -
11 Sobic.010G039000 expressed protein -
12 Sobic.007G003100 transmembrane protein 18, putative, expressed -
13 Sobic.002G255400 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed K09569: FK506-binding protein 2
14 Sobic.002G295700 transporter family protein, putative, expressed -
15 Sobic.K043400 dnaJ homolog subfamily C member, putative, expressed K09523: DnaJ homolog subfamily C member 3
16 Sobic.009G112900 expressed protein K18170: LYRM7, complex III assembly factor LYRM7
17 Sobic.007G184200 haloacid dehalogenase-like hydrolase family protein, putative, expressed -
18 Sobic.001G060300 expressed protein -
19 Sobic.002G054700 indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed K01695: tryptophan synthase alpha chain
20 Sobic.009G218000 VIP1 protein, putative, expressed -


Gene co-expression network
sample Sobic002G366800 Sobic002G366800 Sobic008G018300 Sobic008G018300 Sobic002G366800--Sobic008G018300 Sobic002G034700 Sobic002G034700 Sobic002G366800--Sobic002G034700 Sobic010G225201 Sobic010G225201 Sobic002G366800--Sobic010G225201 Sobic003G113400 Sobic003G113400 Sobic002G366800--Sobic003G113400 Sobic002G397900 Sobic002G397900 Sobic002G366800--Sobic002G397900 Sobic003G129900 Sobic003G129900 Sobic002G366800--Sobic003G129900 Sobic005G044300 Sobic005G044300 Sobic002G366800--Sobic005G044300 Sobic002G259700 Sobic002G259700 Sobic002G366800--Sobic002G259700 Sobic001G387200 Sobic001G387200 Sobic002G366800--Sobic001G387200 Sobic002G255400 Sobic002G255400 Sobic008G018300--Sobic002G255400 Sobic002G352200 Sobic002G352200 Sobic008G018300--Sobic002G352200 Sobic008G018300--Sobic001G387200 Sobic004G173700 Sobic004G173700 Sobic008G018300--Sobic004G173700 Sobic002G420600 Sobic002G420600 Sobic008G018300--Sobic002G420600 Sobic003G260600 Sobic003G260600 Sobic008G018300--Sobic003G260600 Sobic001G282200 Sobic001G282200 Sobic008G018300--Sobic001G282200 Sobic008G018300--Sobic003G129900 Sobic003G016300 Sobic003G016300 Sobic008G018300--Sobic003G016300 Sobic001G485000 Sobic001G485000 Sobic002G034700--Sobic001G485000 Sobic006G120900 Sobic006G120900 Sobic002G034700--Sobic006G120900 Sobic001G020700 Sobic001G020700 Sobic002G034700--Sobic001G020700 Sobic007G138100 Sobic007G138100 Sobic002G034700--Sobic007G138100 Sobic002G034700--Sobic002G397900 Sobic002G034700--Sobic003G129900 Sobic002G034700--Sobic001G387200 Sobic009G017600 Sobic009G017600 Sobic002G034700--Sobic009G017600 Sobic003G380300 Sobic003G380300 Sobic002G034700--Sobic003G380300 Sobic002G034750 Sobic002G034750 Sobic010G225201--Sobic002G034750 Sobic010G039000 Sobic010G039000 Sobic010G225201--Sobic010G039000 Sobic001G504500 Sobic001G504500 Sobic010G225201--Sobic001G504500 Sobic008G006000 Sobic008G006000 Sobic010G225201--Sobic008G006000 Sobic010G255900 Sobic010G255900 Sobic010G225201--Sobic010G255900 Sobic010G225201--Sobic002G397900 Sobic004G100100 Sobic004G100100 Sobic010G225201--Sobic004G100100 Sobic005G170000 Sobic005G170000 Sobic010G225201--Sobic005G170000 Sobic007G219500 Sobic007G219500 Sobic010G225201--Sobic007G219500 Sobic003G167000 Sobic003G167000 Sobic003G113400--Sobic003G167000 Sobic009G041800 Sobic009G041800 Sobic003G113400--Sobic009G041800 Sobic004G334200 Sobic004G334200 Sobic003G113400--Sobic004G334200 Sobic007G191600 Sobic007G191600 Sobic003G113400--Sobic007G191600 Sobic001G203600 Sobic001G203600 Sobic003G113400--Sobic001G203600 Sobic004G043600 Sobic004G043600 Sobic003G113400--Sobic004G043600 Sobic002G402500 Sobic002G402500 Sobic003G113400--Sobic002G402500 Sobic010G250000 Sobic010G250000 Sobic003G113400--Sobic010G250000 Sobic001G052100 Sobic001G052100 Sobic003G113400--Sobic001G052100 Sobic003G349900 Sobic003G349900 Sobic002G397900--Sobic003G349900 Sobic001G280500 Sobic001G280500 Sobic002G397900--Sobic001G280500 Sobic003G089100 Sobic003G089100 Sobic002G397900--Sobic003G089100 Sobic004G074600 Sobic004G074600 Sobic002G397900--Sobic004G074600 Sobic002G213900 Sobic002G213900 Sobic002G397900--Sobic002G213900 Sobic002G414800 Sobic002G414800 Sobic002G397900--Sobic002G414800 Sobic002G054700 Sobic002G054700 Sobic002G397900--Sobic002G054700 Sobic001G356200 Sobic001G356200 Sobic002G397900--Sobic001G356200 Sobic003G201500 Sobic003G201500 Sobic002G397900--Sobic003G201500 Sobic003G129900--Sobic001G387200 Sobic004G093600 Sobic004G093600 Sobic003G129900--Sobic004G093600 Sobic003G129900--Sobic006G120900 Sobic005G019100 Sobic005G019100 Sobic003G129900--Sobic005G019100 Sobic003G129900--Sobic004G173700 Sobic004G256700 Sobic004G256700 Sobic003G129900--Sobic004G256700 Sobic003G129900--Sobic002G420600 Sobic003G034900 Sobic003G034900 Sobic003G129900--Sobic003G034900 Sobic001G518500 Sobic001G518500 Sobic003G129900--Sobic001G518500 Sobic005G044300--Sobic008G018300 Sobic004G159000 Sobic004G159000 Sobic005G044300--Sobic004G159000 Sobic005G044300--Sobic001G387200 Sobic004G039400 Sobic004G039400 Sobic005G044300--Sobic004G039400 Sobic005G044300--Sobic002G420600 Sobic004G353500 Sobic004G353500 Sobic005G044300--Sobic004G353500 Sobic003G335300 Sobic003G335300 Sobic005G044300--Sobic003G335300 Sobic005G044300--Sobic003G016300 Sobic001G038000 Sobic001G038000 Sobic005G044300--Sobic001G038000 Sobic002G259700--Sobic001G356200 Sobic002G259700--Sobic003G201500 Sobic002G259700--Sobic003G089100 Sobic002G259700--Sobic002G054700 Sobic002G259700--Sobic006G120900 Sobic002G259700--Sobic001G387200 Sobic002G259700--Sobic002G255400 Sobic004G107100 Sobic004G107100 Sobic002G259700--Sobic004G107100 Sobic002G259700--Sobic002G397900 Sobic001G387200--Sobic003G129900 Sobic001G387200--Sobic004G093600 Sobic001G387200--Sobic006G120900 Sobic001G387200--Sobic004G173700 Sobic001G387200--Sobic008G018300 Sobic001G387200--Sobic004G256700 Sobic001G387200--Sobic002G255400 Sobic001G387200--Sobic002G420600 Sobic001G387200--Sobic005G019100
Octagon: transcription factors


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