Gene annotation
Transcriptome id Sobic.008G015600.1
Synonym Sb08g001380, CPK34
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
CAMK_CAMK_like.42 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
UniProt C5YQL9
Pfam PF07714 PF13499
Panther DB PTHR24349 PTHR24349:SF130
NCBI CDD KOG0032; Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily
KEGG Orthology K13412; calcium-dependent protein kinase
Gene Ontology GO:0006468; protein phosphorylation GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT5G12180 : calcium-dependent protein kinase 17
RAP-DB (Rice) LOC_Os11g04170.1 : CAMK_CAMK_like.42 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
MaizeGDB (Corn) Zm00025a039821 , Zm00025a027150 , Zm00025a041347 , Zm00025a025734 , Zm00025a033981 , Zm00025a033401 , Zm00025a012860 , Zm00025a038581 , Zm00025a037842 , Zm00025a032700 , Zm00025a054043 , Zm00025a013124
Brachypodium KQJ91880 , KQK12836 , KQK08794 , KQJ92400 , KQK05644 , KQJ89539 , KQK10184 , PNT73998 , PNT73999
Barley HORVU3Hr1G079040.5 , HORVU3Hr1G079040.4 , HORVU3Hr1G079040.7 , HORVU3Hr1G079040.6 , HORVU3Hr1G079040.1 , HORVU3Hr1G079040.3 , HORVU3Hr1G079040.2 , HORVU4Hr1G026640.1 , HORVU4Hr1G026640.4 , HORVU4Hr1G026640.5 , HORVU1Hr1G092710.1 , HORVU1Hr1G092710.2 , HORVU6Hr1G094990.7 , HORVU6Hr1G094990.5 , HORVU6Hr1G094990.8 , HORVU0Hr1G032220.2 , HORVU0Hr1G032220.1 , HORVU1Hr1G068240.2 , HORVU1Hr1G068240.1 , HORVU6Hr1G094990.6 , HORVU6Hr1G094990.4 , HORVU6Hr1G094990.3 , HORVU6Hr1G094990.2 , HORVU6Hr1G094990.1 , HORVU5Hr1G044550.1 , HORVU5Hr1G044550.3 , HORVU5Hr1G044550.2
Wheat TraesCS5B02G428700 , TraesCS1B02G320400 , TraesCS5D02G153800 , TraesCS5D02G434500 , TraesCS1A02G424200 , TraesCS4A02G187900 , TraesCS4D02G125500 , TraesCS3A02G334200 , TraesCS5A02G426800 , TraesCS5A02G426800 , TraesCS2D02G456400 , TraesCS5A02G107900 , TraesCS5A02G107900 , TraesCS5A02G107900 , TraesCS5A02G107900 , TraesCS5D02G434500 , TraesCS6B02G467300 , TraesCS6D02G404800 , TraesCS5B02G428400 , TraesCS5B02G428400 , TraesCS5B02G137600 , TraesCS3B02G365200 , TraesCS5D02G122800 , TraesCS6A02G261200 , TraesCS3A02G224900 , TraesCS5B02G115400 , TraesCS5B02G115400 , TraesCS1A02G309400 , TraesCS1A02G309400 , TraesCS3D02G327700 , TraesCS3D02G327700 , TraesCS3D02G327700 , TraesCS5D02G122800 , TraesCS6D02G242000 , TraesCS6D02G242000 , TraesCS3B02G254500 , TraesCS5D02G434800 , TraesCS5D02G434800 , TraesCS1D02G308800 , TraesCS1D02G308800 , TraesCS6A02G421000 , TraesCS5A02G426500 , TraesCS4B02G130300 , TraesCS5D02G122800 , TraesCS5D02G122800 , TraesCS5A02G138300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G104600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@dnaJ domain containing protein, expressed K09510: DnaJ homolog subfamily B member 4
2 Sobic.002G265300 acyl-coenzyme A thioesterase 10, mitochondrial precursor, putative, expressed K17361: acyl-coenzyme A thioesterase 9
3 Sobic.010G182500 ras-related protein, putative, expressed K07936: GTP-binding nuclear protein Ran
4 Sobic.002G266200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.006G030700 receptor kinase, putative, expressed -
6 Sobic.001G280200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsSCP44 - Putative Serine Carboxypeptidase homologue, expressed K16296: serine carboxypeptidase-like clade I
7 Sobic.008G153400 peptidase, putative, expressed K18151: ureidoglycolate amidohydrolase
8 Sobic.001G162700 "phosphatidylinositol phosphatase, up-regulated under severe drought stress"(PubMedID : 24655390)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@endonuclease/exonuclease/phosphatase family domain containing protein, expressed K01106: inositol-1,4,5-trisphosphate 5-phosphatase
9 Sobic.002G409500 lipase precursor, putative, expressed -
10 Sobic.009G241000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@3 Ketoacyl CoA synthetase 11 KCS11 (At)(PubMedID : 27208977)@3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
11 Sobic.007G187300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
12 Sobic.010G098100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@glycosyl hydrolases family 16, putative, expressed K08235: xyloglucan:xyloglucosyl transferase
13 Sobic.K030700 - -
14 Sobic.006G081900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsFBX199 - F-box domain containing protein, expressed -
15 Sobic.002G209000 glutamate receptor, putative, expressed K05387: glutamate receptor, ionotropic, plant
16 Sobic.001G249300 Cf2/Cf5 disease resistance protein, putative, expressed -
17 Sobic.001G512800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aconitate hydratase protein, putative, expressed K01681: ACO, aconitate hydratase
18 Sobic.001G434650 - -
19 Sobic.002G085300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
20 Sobic.009G029600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutamate--cysteine ligase, chloroplast precursor, putative, expressed K01919: glutamate--cysteine ligase


Gene co-expression network
sample Sobic008G015600 Sobic008G015600 Sobic007G104600 Sobic007G104600 Sobic008G015600--Sobic007G104600 Sobic002G265300 Sobic002G265300 Sobic008G015600--Sobic002G265300 Sobic010G182500 Sobic010G182500 Sobic008G015600--Sobic010G182500 Sobic002G266200 Sobic002G266200 Sobic008G015600--Sobic002G266200 Sobic006G030700 Sobic006G030700 Sobic008G015600--Sobic006G030700 Sobic001G280200 Sobic001G280200 Sobic008G015600--Sobic001G280200 Sobic008G153400 Sobic008G153400 Sobic008G015600--Sobic008G153400 Sobic001G162700 Sobic001G162700 Sobic008G015600--Sobic001G162700 Sobic002G409500 Sobic002G409500 Sobic008G015600--Sobic002G409500 Sobic007G104600--Sobic008G015600 Sobic010G270200 Sobic010G270200 Sobic007G104600--Sobic010G270200 Sobic004G051500 Sobic004G051500 Sobic007G104600--Sobic004G051500 Sobic006G132600 Sobic006G132600 Sobic007G104600--Sobic006G132600 Sobic001G434650 Sobic001G434650 Sobic007G104600--Sobic001G434650 Sobic006G077700 Sobic006G077700 Sobic007G104600--Sobic006G077700 Sobic006G166400 Sobic006G166400 Sobic007G104600--Sobic006G166400 Sobic002G381800 Sobic002G381800 Sobic007G104600--Sobic002G381800 Sobic004G198800 Sobic004G198800 Sobic007G104600--Sobic004G198800 Sobic003G377000 Sobic003G377000 Sobic002G265300--Sobic003G377000 Sobic002G007800 Sobic002G007800 Sobic002G265300--Sobic002G007800 Sobic004G096700 Sobic004G096700 Sobic002G265300--Sobic004G096700 Sobic002G431000 Sobic002G431000 Sobic002G265300--Sobic002G431000 Sobic002G426300 Sobic002G426300 Sobic002G265300--Sobic002G426300 Sobic010G171000 Sobic010G171000 Sobic002G265300--Sobic010G171000 Sobic009G241000 Sobic009G241000 Sobic002G265300--Sobic009G241000 Sobic010G184300 Sobic010G184300 Sobic002G265300--Sobic010G184300 Sobic009G025200 Sobic009G025200 Sobic002G265300--Sobic009G025200 Sobic009G226300 Sobic009G226300 Sobic010G182500--Sobic009G226300 Sobic007G187300 Sobic007G187300 Sobic010G182500--Sobic007G187300 Sobic009G054500 Sobic009G054500 Sobic010G182500--Sobic009G054500 Sobic001G249300 Sobic001G249300 Sobic010G182500--Sobic001G249300 Sobic005G018500 Sobic005G018500 Sobic010G182500--Sobic005G018500 Sobic006G100332 Sobic006G100332 Sobic010G182500--Sobic006G100332 Sobic003G138200 Sobic003G138200 Sobic010G182500--Sobic003G138200 Sobic003G259200 Sobic003G259200 Sobic010G182500--Sobic003G259200 Sobic004G260000 Sobic004G260000 Sobic010G182500--Sobic004G260000 Sobic002G266200--Sobic003G138200 Sobic002G266200--Sobic001G249300 Sobic001G150200 Sobic001G150200 Sobic002G266200--Sobic001G150200 Sobic002G215700 Sobic002G215700 Sobic002G266200--Sobic002G215700 Sobic002G266200--Sobic009G054500 Sobic007G186200 Sobic007G186200 Sobic002G266200--Sobic007G186200 Sobic002G266200--Sobic007G187300 Sobic002G266200--Sobic009G226300 Sobic001G512800 Sobic001G512800 Sobic002G266200--Sobic001G512800 Sobic006G030700--Sobic007G187300 Sobic006G030700--Sobic009G226300 Sobic006G030700--Sobic001G249300 Sobic001G150600 Sobic001G150600 Sobic006G030700--Sobic001G150600 Sobic006G030700--Sobic001G280200 Sobic006G030700--Sobic009G054500 Sobic006G030700--Sobic006G100332 Sobic009G029600 Sobic009G029600 Sobic006G030700--Sobic009G029600 Sobic003G087200 Sobic003G087200 Sobic006G030700--Sobic003G087200 Sobic001G280200--Sobic001G249300 Sobic001G280200--Sobic009G029600 Sobic001G280200--Sobic006G030700 Sobic004G255000 Sobic004G255000 Sobic001G280200--Sobic004G255000 Sobic001G280200--Sobic009G226300 Sobic001G280200--Sobic007G187300 Sobic001G280200--Sobic009G054500 Sobic001G280200--Sobic001G162700 Sobic001G280200--Sobic001G150600 Sobic008G153400--Sobic001G150600 Sobic006G199000 Sobic006G199000 Sobic008G153400--Sobic006G199000 Sobic008G153400--Sobic006G030700 Sobic001G325200 Sobic001G325200 Sobic008G153400--Sobic001G325200 Sobic003G398100 Sobic003G398100 Sobic008G153400--Sobic003G398100 Sobic003G257100 Sobic003G257100 Sobic008G153400--Sobic003G257100 Sobic008G153400--Sobic003G087200 Sobic006G091700 Sobic006G091700 Sobic008G153400--Sobic006G091700 Sobic008G153400--Sobic009G226300 Sobic001G162700--Sobic001G280200 Sobic001G162700--Sobic001G249300 Sobic010G098100 Sobic010G098100 Sobic001G162700--Sobic010G098100 Sobic001G162700--Sobic009G029600 Sobic001G162700--Sobic003G259200 Sobic001G162700--Sobic004G255000 Sobic001G483500 Sobic001G483500 Sobic001G162700--Sobic001G483500 Sobic001G162700--Sobic006G030700 Sobic001G412700 Sobic001G412700 Sobic001G162700--Sobic001G412700 Sobic002G409500--Sobic009G029600 Sobic003G219600 Sobic003G219600 Sobic002G409500--Sobic003G219600 Sobic009G211400 Sobic009G211400 Sobic002G409500--Sobic009G211400 Sobic002G409500--Sobic001G280200 Sobic002G409500--Sobic001G249300 Sobic002G409500--Sobic003G257100 Sobic002G409500--Sobic004G255000 Sobic002G215800 Sobic002G215800 Sobic002G409500--Sobic002G215800 Sobic002G409500--Sobic003G259200
Octagon: transcription factors


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