Gene annotation
Transcriptome id Sobic.006G081900.1
Synonym Sb06g016855
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
OsFBX199 - F-box domain containing protein, expressed
UniProt A0A1Z5RCW1
Pfam PF00646
Panther DB PTHR32133 PTHR32133:SF109
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G47790 : F-box and associated interaction domains-containing protein
RAP-DB (Rice) LOC_Os06g40220.1 : OsFBX199 - F-box domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G209000 glutamate receptor, putative, expressed K05387: glutamate receptor, ionotropic, plant
2 Sobic.006G100400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.010G248900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@disease resistance protein RPM1, putative, expressed K13457: RPM1, disease resistance protein RPM1
4 Sobic.008G015600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@CAMK_CAMK_like.42 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
5 Sobic.010G170550 - -
6 Sobic.001G483500 DUF567 domain containing protein, putative, expressed -
7 Sobic.003G269700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@SAM dependent carboxyl methyltransferase, putative, expressed -
8 Sobic.001G251900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@exonuclease, putative, expressed -
9 Sobic.002G409500 lipase precursor, putative, expressed -
10 Sobic.004G255000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@aspartic proteinase nepenthesin-2 precursor, putative, expressed -
11 Sobic.001G412700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@IN2-1 protein, putative, expressed K00799: GST, glutathione S-transferase
12 Sobic.009G061300 - -
13 Sobic.003G259200 -(PubMedID : 26976818)@uncharacterized kinase mug58, putative, expressed K15918: D-glycerate 3-kinase
14 Sobic.002G100700 expressed protein -
15 Sobic.003G219600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@ThiF family domain containing protein, putative, expressed K08337: ubiquitin-like modifier-activating enzyme ATG7
16 Sobic.004G006966 - -
17 Sobic.004G006966 - -
18 Sobic.004G006966 - -
19 Sobic.004G006966 - -
20 Sobic.004G006966 - -


Gene co-expression network
sample Sobic006G081900 Sobic006G081900 Sobic002G209000 Sobic002G209000 Sobic006G081900--Sobic002G209000 Sobic006G100400 Sobic006G100400 Sobic006G081900--Sobic006G100400 Sobic010G248900 Sobic010G248900 Sobic006G081900--Sobic010G248900 Sobic008G015600 Sobic008G015600 Sobic006G081900--Sobic008G015600 Sobic010G170550 Sobic010G170550 Sobic006G081900--Sobic010G170550 Sobic001G483500 Sobic001G483500 Sobic006G081900--Sobic001G483500 Sobic003G269700 Sobic003G269700 Sobic006G081900--Sobic003G269700 Sobic001G251900 Sobic001G251900 Sobic006G081900--Sobic001G251900 Sobic002G409500 Sobic002G409500 Sobic006G081900--Sobic002G409500 Sobic001G101400 Sobic001G101400 Sobic002G209000--Sobic001G101400 Sobic002G209000--Sobic001G483500 Sobic002G209000--Sobic001G251900 Sobic007G003200 Sobic007G003200 Sobic002G209000--Sobic007G003200 Sobic001G212000 Sobic001G212000 Sobic002G209000--Sobic001G212000 Sobic010G016800 Sobic010G016800 Sobic002G209000--Sobic010G016800 Sobic010G098100 Sobic010G098100 Sobic002G209000--Sobic010G098100 Sobic004G006966 Sobic004G006966 Sobic002G209000--Sobic004G006966 Sobic006G100400--Sobic003G269700 Sobic003G219600 Sobic003G219600 Sobic006G100400--Sobic003G219600 Sobic006G100400--Sobic001G483500 Sobic005G151700 Sobic005G151700 Sobic006G100400--Sobic005G151700 Sobic003G259200 Sobic003G259200 Sobic006G100400--Sobic003G259200 Sobic006G100400--Sobic001G251900 Sobic004G255000 Sobic004G255000 Sobic006G100400--Sobic004G255000 Sobic006G100400--Sobic002G409500 Sobic006G100400--Sobic010G098100 Sobic001G249300 Sobic001G249300 Sobic010G248900--Sobic001G249300 Sobic006G030700 Sobic006G030700 Sobic010G248900--Sobic006G030700 Sobic001G512800 Sobic001G512800 Sobic010G248900--Sobic001G512800 Sobic005G018500 Sobic005G018500 Sobic010G248900--Sobic005G018500 Sobic009G054500 Sobic009G054500 Sobic010G248900--Sobic009G054500 Sobic010G248900--Sobic003G259200 Sobic001G280200 Sobic001G280200 Sobic010G248900--Sobic001G280200 Sobic009G226300 Sobic009G226300 Sobic010G248900--Sobic009G226300 Sobic006G100332 Sobic006G100332 Sobic010G248900--Sobic006G100332 Sobic007G104600 Sobic007G104600 Sobic008G015600--Sobic007G104600 Sobic002G265300 Sobic002G265300 Sobic008G015600--Sobic002G265300 Sobic010G182500 Sobic010G182500 Sobic008G015600--Sobic010G182500 Sobic002G266200 Sobic002G266200 Sobic008G015600--Sobic002G266200 Sobic008G015600--Sobic006G030700 Sobic008G015600--Sobic001G280200 Sobic008G153400 Sobic008G153400 Sobic008G015600--Sobic008G153400 Sobic001G162700 Sobic001G162700 Sobic008G015600--Sobic001G162700 Sobic008G015600--Sobic002G409500 Sobic010G170550--Sobic003G269700 Sobic009G029600 Sobic009G029600 Sobic010G170550--Sobic009G029600 Sobic010G170550--Sobic004G255000 Sobic010G170550--Sobic003G219600 Sobic010G170550--Sobic001G483500 Sobic010G170550--Sobic005G151700 Sobic003G216000 Sobic003G216000 Sobic010G170550--Sobic003G216000 Sobic010G170550--Sobic006G100400 Sobic010G170550--Sobic001G251900 Sobic001G483500--Sobic010G098100 Sobic001G483500--Sobic005G151700 Sobic001G483500--Sobic004G006966 Sobic001G483500--Sobic001G101400 Sobic001G483500--Sobic001G251900 Sobic003G269700--Sobic004G255000 Sobic001G412700 Sobic001G412700 Sobic003G269700--Sobic001G412700 Sobic003G269700--Sobic009G029600 Sobic003G269700--Sobic001G483500 Sobic003G269700--Sobic003G219600 Sobic003G269700--Sobic005G151700 Sobic003G269700--Sobic006G100400 Sobic003G269700--Sobic010G170550 Sobic003G269700--Sobic003G259200 Sobic001G251900--Sobic001G483500 Sobic001G251900--Sobic003G219600 Sobic001G251900--Sobic004G006966 Sobic001G251900--Sobic006G100400 Sobic001G251900--Sobic005G151700 Sobic002G409500--Sobic009G029600 Sobic002G409500--Sobic003G219600 Sobic009G211400 Sobic009G211400 Sobic002G409500--Sobic009G211400 Sobic002G409500--Sobic001G280200 Sobic002G409500--Sobic001G249300 Sobic003G257100 Sobic003G257100 Sobic002G409500--Sobic003G257100 Sobic002G409500--Sobic004G255000 Sobic002G215800 Sobic002G215800 Sobic002G409500--Sobic002G215800 Sobic002G409500--Sobic003G259200
Octagon: transcription factors


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