Gene annotation
Transcriptome id Sobic.004G228400.2,Sobic.004G228400.1
Synonym Sb04g027280
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
helix-loop-helix DNA-binding protein, putative, expressed
UniProt A0A194YSA2 , A0A194YR51
Pfam PF00010
Panther DB PTHR11969 PTHR11969:SF24
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G72210 : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os02g52190.1 : helix-loop-helix DNA-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a047332 , Zm00025a014121 , Zm00025a022171 , Zm00025a033131
Brachypodium KQJ90584 , KQK01808 , PNT64756
Barley HORVU5Hr1G070000.8 , HORVU5Hr1G070000.9 , HORVU5Hr1G070000.1 , HORVU5Hr1G070000.2 , HORVU5Hr1G070000.3 , HORVU5Hr1G070000.4 , HORVU5Hr1G070000.5 , HORVU5Hr1G070000.6 , HORVU5Hr1G070000.7
Wheat TraesCS6D02G294900 , TraesCS6A02G264200 , TraesCS5D02G255100 , TraesCS6A02G315700 , TraesCS6B02G346100
Populus -


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cDNA sequences
Sobic.004G228400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G104300 gamma-glutamyltranspeptidase 1 precursor, putative, expressed K18592: GGT1_5, gamma-glutamyltranspeptidase / glutathione hydrolase / leukotriene-C4 hydrolase
2 Sobic.003G025900 - -
3 Sobic.001G395700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ proteins of unknown function domain containing protein, expressed -
4 Sobic.005G019800 ZF-HD protein dimerisation region containing protein, expressed -
5 Sobic.001G023200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@electron transfer flavoprotein subunit alpha, mitochondrial precursor, putative, expressed K03522: fixB, electron transfer flavoprotein alpha subunit
6 Sobic.010G168200 HAD superfamily phosphatase, putative, expressed -
7 Sobic.007G106900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@endoribonuclease Dicer, putative, expressed -
8 Sobic.003G009100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@peroxisomal membrane protein, putative, expressed K13348: protein Mpv17
9 Sobic.009G122600 LRP1, putative, expressed -
10 Sobic.006G127100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@malate synthase, glyoxysomal, putative, expressed K01638: aceB, malate synthase
11 Sobic.001G468400 Increased expression in phyB-1 mutant(PubMedID : 26893475)@Up-reguralion under drought(PubMedID : 24916767)@homeobox domain containing protein, expressed -
12 Sobic.001G430900 ubiquitin fusion protein, putative, expressed -
13 Sobic.004G347300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@thioredoxin, putative, expressed -
14 Sobic.009G055600 TKL_IRAK_CrRLK1L-1.10 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed -
15 Sobic.009G250200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@transmembrane amino acid transporter protein, putative, expressed -
16 Sobic.001G132000 fumarylacetoacetase, putative, expressed K01557: acylpyruvate hydrolase
17 Sobic.009G216100 polygalacturonase, putative, expressed -
18 Sobic.004G009000 expressed protein K06877: DEAD/DEAH box helicase domain-containing protein
19 Sobic.002G062500 aldehyde dehydrogenase, putative, expressed K00140: mmsA, iolA, malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase
20 Sobic.003G054900 KIP1, putative, expressed -


Gene co-expression network
sample Sobic004G228400 Sobic004G228400 Sobic006G104300 Sobic006G104300 Sobic004G228400--Sobic006G104300 Sobic003G025900 Sobic003G025900 Sobic004G228400--Sobic003G025900 Sobic001G395700 Sobic001G395700 Sobic004G228400--Sobic001G395700 Sobic005G019800 Sobic005G019800 Sobic004G228400--Sobic005G019800 Sobic001G023200 Sobic001G023200 Sobic004G228400--Sobic001G023200 Sobic010G168200 Sobic010G168200 Sobic004G228400--Sobic010G168200 Sobic007G106900 Sobic007G106900 Sobic004G228400--Sobic007G106900 Sobic003G009100 Sobic003G009100 Sobic004G228400--Sobic003G009100 Sobic009G122600 Sobic009G122600 Sobic004G228400--Sobic009G122600 Sobic006G104300--Sobic004G228400 Sobic003G214400 Sobic003G214400 Sobic006G104300--Sobic003G214400 Sobic006G104300--Sobic001G395700 Sobic002G172900 Sobic002G172900 Sobic006G104300--Sobic002G172900 Sobic010G134400 Sobic010G134400 Sobic006G104300--Sobic010G134400 Sobic002G195000 Sobic002G195000 Sobic006G104300--Sobic002G195000 Sobic006G104300--Sobic007G106900 Sobic007G148700 Sobic007G148700 Sobic006G104300--Sobic007G148700 Sobic008G190900 Sobic008G190900 Sobic006G104300--Sobic008G190900 Sobic003G025900--Sobic005G019800 Sobic001G227800 Sobic001G227800 Sobic003G025900--Sobic001G227800 Sobic002G058500 Sobic002G058500 Sobic003G025900--Sobic002G058500 Sobic006G127100 Sobic006G127100 Sobic003G025900--Sobic006G127100 Sobic002G215700 Sobic002G215700 Sobic003G025900--Sobic002G215700 Sobic001G321000 Sobic001G321000 Sobic003G025900--Sobic001G321000 Sobic004G320600 Sobic004G320600 Sobic003G025900--Sobic004G320600 Sobic006G226400 Sobic006G226400 Sobic003G025900--Sobic006G226400 Sobic004G321800 Sobic004G321800 Sobic003G025900--Sobic004G321800 Sobic001G395700--Sobic002G058500 Sobic003G012300 Sobic003G012300 Sobic001G395700--Sobic003G012300 Sobic001G395700--Sobic002G215700 Sobic006G139000 Sobic006G139000 Sobic001G395700--Sobic006G139000 Sobic001G395700--Sobic001G227800 Sobic001G395700--Sobic002G195000 Sobic004G101900 Sobic004G101900 Sobic001G395700--Sobic004G101900 Sobic005G231900 Sobic005G231900 Sobic001G395700--Sobic005G231900 Sobic003G226200 Sobic003G226200 Sobic001G395700--Sobic003G226200 Sobic005G019800--Sobic003G025900 Sobic005G019800--Sobic002G058500 Sobic005G019800--Sobic006G139000 Sobic005G019800--Sobic001G227800 Sobic001G280000 Sobic001G280000 Sobic005G019800--Sobic001G280000 Sobic003G272600 Sobic003G272600 Sobic005G019800--Sobic003G272600 Sobic005G019800--Sobic001G395700 Sobic003G356400 Sobic003G356400 Sobic005G019800--Sobic003G356400 Sobic005G019800--Sobic002G215700 Sobic001G023200--Sobic003G009100 Sobic002G258100 Sobic002G258100 Sobic001G023200--Sobic002G258100 Sobic001G010400 Sobic001G010400 Sobic001G023200--Sobic001G010400 Sobic004G347300 Sobic004G347300 Sobic001G023200--Sobic004G347300 Sobic001G393800 Sobic001G393800 Sobic001G023200--Sobic001G393800 Sobic004G203100 Sobic004G203100 Sobic001G023200--Sobic004G203100 Sobic010G016400 Sobic010G016400 Sobic001G023200--Sobic010G016400 Sobic002G113300 Sobic002G113300 Sobic001G023200--Sobic002G113300 Sobic001G023200--Sobic007G106900 Sobic001G289400 Sobic001G289400 Sobic010G168200--Sobic001G289400 Sobic001G106400 Sobic001G106400 Sobic010G168200--Sobic001G106400 Sobic001G458200 Sobic001G458200 Sobic010G168200--Sobic001G458200 Sobic006G066600 Sobic006G066600 Sobic010G168200--Sobic006G066600 Sobic001G233532 Sobic001G233532 Sobic010G168200--Sobic001G233532 Sobic009G256200 Sobic009G256200 Sobic010G168200--Sobic009G256200 Sobic002G062500 Sobic002G062500 Sobic010G168200--Sobic002G062500 Sobic008G134900 Sobic008G134900 Sobic010G168200--Sobic008G134900 Sobic002G359900 Sobic002G359900 Sobic010G168200--Sobic002G359900 Sobic007G106900--Sobic001G023200 Sobic002G249000 Sobic002G249000 Sobic007G106900--Sobic002G249000 Sobic006G192700 Sobic006G192700 Sobic007G106900--Sobic006G192700 Sobic001G085900 Sobic001G085900 Sobic007G106900--Sobic001G085900 Sobic008G179500 Sobic008G179500 Sobic007G106900--Sobic008G179500 Sobic009G003900 Sobic009G003900 Sobic007G106900--Sobic009G003900 Sobic007G106900--Sobic003G009100 Sobic006G196200 Sobic006G196200 Sobic007G106900--Sobic006G196200 Sobic007G106900--Sobic001G393800 Sobic003G009100--Sobic001G023200 Sobic003G354400 Sobic003G354400 Sobic003G009100--Sobic003G354400 Sobic005G150800 Sobic005G150800 Sobic003G009100--Sobic005G150800 Sobic003G009100--Sobic002G113300 Sobic002G132000 Sobic002G132000 Sobic003G009100--Sobic002G132000 Sobic004G006200 Sobic004G006200 Sobic003G009100--Sobic004G006200 Sobic009G054700 Sobic009G054700 Sobic003G009100--Sobic009G054700 Sobic003G009100--Sobic004G203100 Sobic003G009100--Sobic006G192700 Sobic002G035600 Sobic002G035600 Sobic009G122600--Sobic002G035600 Sobic006G066700 Sobic006G066700 Sobic009G122600--Sobic006G066700 Sobic006G125200 Sobic006G125200 Sobic009G122600--Sobic006G125200 Sobic009G137500 Sobic009G137500 Sobic009G122600--Sobic009G137500 Sobic010G151700 Sobic010G151700 Sobic009G122600--Sobic010G151700 Sobic001G080200 Sobic001G080200 Sobic009G122600--Sobic001G080200 Sobic003G412800 Sobic003G412800 Sobic009G122600--Sobic003G412800 Sobic009G122600--Sobic004G228400 Sobic001G439000 Sobic001G439000 Sobic009G122600--Sobic001G439000
Octagon: transcription factors


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