Gene annotation
Transcriptome id Sobic.001G430900.2,Sobic.001G430900.1
Synonym
Functional annotation ubiquitin fusion protein, putative, expressed
UniProt A0A1B6QP88 , A0A1B6QP95
Pfam PF01020 PF00240 PF00240 PF01020
Panther DB PTHR10666
NCBI CDD KOG0003; Ubiquitin/60s ribosomal protein L40 fusion
KEGG Orthology -
Gene Ontology GO:0005515; protein binding GO:0006412translation GO:0005840ribosome GO:0003735structural constituent of ribosome GO:0006412translation GO:0005840ribosome GO:0003735structural constituent of ribosome GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT2G36170 : Ubiquitin supergroup;Ribosomal protein L40e
RAP-DB (Rice) LOC_Os03g15370.1,LOC_Os09g27930.1 : ubiquitin fusion protein, putative, expressed
MaizeGDB (Corn) Zm00025a001454 , Zm00025a001458
Brachypodium KQJ91591 , KQJ90267 , KQK16840
Barley HORVU4Hr1G001170.5 , HORVU4Hr1G001170.4 , HORVU7Hr1G113500.1 , HORVU4Hr1G001170.1 , HORVU4Hr1G001170.3 , HORVU4Hr1G001170.2 , HORVU7Hr1G109650.1 , HORVU7Hr1G109650.2 , HORVU5Hr1G065170.2 , HORVU5Hr1G065170.3 , HORVU5Hr1G065170.1
Wheat TraesCS4D02G006900 , TraesCS6A02G148100 , TraesCS5D02G231400 , TraesCS4A02G086400 , TraesCS1B02G241200 , TraesCS5B02G222800 , TraesCS4B02G008400 , TraesCS7B02G413800 , TraesCS6D02G137400 , TraesCS5D02G269800 , TraesCS1A02G227100 , TraesCS7D02G494400 , TraesCS7A02G506300 , TraesCS4B02G218000 , TraesCS5B02G260700 , TraesCS4A02G306500 , TraesCS1D02G228700
Populus PNT11513


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G417600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@actin-depolymerizing factor, putative, expressed K05765: cofilin
2 Sobic.009G208500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@DUF584 domain containing protein, putative, expressed -
3 Sobic.006G139000 carboxyvinyl-carboxyphosphonate phosphorylmutase, putative, expressed -
4 Sobic.003G272600 expressed protein -
5 Sobic.006G115466 - -
6 Sobic.004G338800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
7 Sobic.010G133700 - -
8 Sobic.007G178100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@zinc finger, C3HC4 type family protein, expressed K19045: E3 ubiquitin-protein ligase BIG BROTHER and related proteins
9 Sobic.003G214400 amino acid permease family protein, putative, expressed -
10 Sobic.001G395700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ proteins of unknown function domain containing protein, expressed -
11 Sobic.005G019800 ZF-HD protein dimerisation region containing protein, expressed -
12 Sobic.009G069000 AGC_AGC_other_NDRh_TRCd.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
13 Sobic.003G033000 DIRP family protein, putative, expressed -
14 Sobic.003G036700 cytokinin dehydrogenase precursor, putative, expressed K00279: cytokinin dehydrogenase
15 Sobic.003G289900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ENTH domain containing protein, expressed K12471: epsin
16 Sobic.001G008600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@phosphoesterase family protein, putative, expressed K01114: phospholipase C
17 Sobic.001G359700 expressed protein -
18 Sobic.005G197100 acyltransferase, putative, expressed K13523: lysophosphatidic acid acyltransferase / lysophosphatidylinositol acyltransferase
19 Sobic.008G061100 expressed protein -
20 Sobic.007G028100 WD repeat-containing protein, putative, expressed -


Gene co-expression network
sample Sobic001G430900 Sobic001G430900 Sobic001G417600 Sobic001G417600 Sobic001G430900--Sobic001G417600 Sobic009G208500 Sobic009G208500 Sobic001G430900--Sobic009G208500 Sobic006G139000 Sobic006G139000 Sobic001G430900--Sobic006G139000 Sobic003G272600 Sobic003G272600 Sobic001G430900--Sobic003G272600 Sobic006G115466 Sobic006G115466 Sobic001G430900--Sobic006G115466 Sobic004G338800 Sobic004G338800 Sobic001G430900--Sobic004G338800 Sobic010G133700 Sobic010G133700 Sobic001G430900--Sobic010G133700 Sobic007G178100 Sobic007G178100 Sobic001G430900--Sobic007G178100 Sobic003G214400 Sobic003G214400 Sobic001G430900--Sobic003G214400 Sobic001G417600--Sobic010G133700 Sobic001G417600--Sobic006G139000 Sobic001G280000 Sobic001G280000 Sobic001G417600--Sobic001G280000 Sobic003G036700 Sobic003G036700 Sobic001G417600--Sobic003G036700 Sobic001G082500 Sobic001G082500 Sobic001G417600--Sobic001G082500 Sobic001G417600--Sobic009G208500 Sobic006G147400 Sobic006G147400 Sobic001G417600--Sobic006G147400 Sobic001G417600--Sobic007G178100 Sobic007G194800 Sobic007G194800 Sobic001G417600--Sobic007G194800 Sobic009G208500--Sobic007G178100 Sobic009G208500--Sobic001G417600 Sobic009G208500--Sobic010G133700 Sobic006G220900 Sobic006G220900 Sobic009G208500--Sobic006G220900 Sobic001G251900 Sobic001G251900 Sobic009G208500--Sobic001G251900 Sobic009G208500--Sobic001G430900 Sobic009G208500--Sobic004G338800 Sobic004G246200 Sobic004G246200 Sobic009G208500--Sobic004G246200 Sobic004G074500 Sobic004G074500 Sobic009G208500--Sobic004G074500 Sobic002G058500 Sobic002G058500 Sobic006G139000--Sobic002G058500 Sobic006G139000--Sobic001G417600 Sobic006G139000--Sobic001G280000 Sobic005G019800 Sobic005G019800 Sobic006G139000--Sobic005G019800 Sobic001G395700 Sobic001G395700 Sobic006G139000--Sobic001G395700 Sobic003G226200 Sobic003G226200 Sobic006G139000--Sobic003G226200 Sobic005G197100 Sobic005G197100 Sobic006G139000--Sobic005G197100 Sobic003G304200 Sobic003G304200 Sobic006G139000--Sobic003G304200 Sobic009G055600 Sobic009G055600 Sobic006G139000--Sobic009G055600 Sobic003G272600--Sobic010G133700 Sobic003G272600--Sobic001G417600 Sobic003G272600--Sobic005G019800 Sobic003G272600--Sobic006G147400 Sobic003G272600--Sobic006G139000 Sobic003G272600--Sobic001G430900 Sobic003G356400 Sobic003G356400 Sobic003G272600--Sobic003G356400 Sobic003G272600--Sobic003G036700 Sobic003G095600 Sobic003G095600 Sobic003G272600--Sobic003G095600 Sobic001G298300 Sobic001G298300 Sobic006G115466--Sobic001G298300 Sobic002G314900 Sobic002G314900 Sobic006G115466--Sobic002G314900 Sobic007G028100 Sobic007G028100 Sobic006G115466--Sobic007G028100 Sobic001G279100 Sobic001G279100 Sobic006G115466--Sobic001G279100 Sobic010G129600 Sobic010G129600 Sobic006G115466--Sobic010G129600 Sobic001G436900 Sobic001G436900 Sobic006G115466--Sobic001G436900 Sobic008G061100 Sobic008G061100 Sobic006G115466--Sobic008G061100 Sobic004G349800 Sobic004G349800 Sobic006G115466--Sobic004G349800 Sobic006G004500 Sobic006G004500 Sobic006G115466--Sobic006G004500 Sobic001G359700 Sobic001G359700 Sobic004G338800--Sobic001G359700 Sobic004G338800--Sobic009G208500 Sobic004G338800--Sobic001G430900 Sobic001G505300 Sobic001G505300 Sobic004G338800--Sobic001G505300 Sobic006G212400 Sobic006G212400 Sobic004G338800--Sobic006G212400 Sobic008G154801 Sobic008G154801 Sobic004G338800--Sobic008G154801 Sobic004G338800--Sobic001G417600 Sobic003G091550 Sobic003G091550 Sobic004G338800--Sobic003G091550 Sobic003G224700 Sobic003G224700 Sobic004G338800--Sobic003G224700 Sobic010G133700--Sobic001G417600 Sobic010G133700--Sobic003G036700 Sobic005G175200 Sobic005G175200 Sobic010G133700--Sobic005G175200 Sobic010G133700--Sobic003G095600 Sobic010G133700--Sobic006G147400 Sobic010G198100 Sobic010G198100 Sobic010G133700--Sobic010G198100 Sobic010G133700--Sobic001G082500 Sobic010G133700--Sobic007G194800 Sobic006G132400 Sobic006G132400 Sobic010G133700--Sobic006G132400 Sobic007G178100--Sobic009G208500 Sobic007G178100--Sobic001G251900 Sobic007G178100--Sobic001G417600 Sobic007G178100--Sobic001G298300 Sobic009G038501 Sobic009G038501 Sobic007G178100--Sobic009G038501 Sobic004G236600 Sobic004G236600 Sobic007G178100--Sobic004G236600 Sobic001G151800 Sobic001G151800 Sobic007G178100--Sobic001G151800 Sobic007G178100--Sobic004G246200 Sobic009G004200 Sobic009G004200 Sobic007G178100--Sobic009G004200 Sobic003G214400--Sobic001G395700 Sobic003G012300 Sobic003G012300 Sobic003G214400--Sobic003G012300 Sobic009G016800 Sobic009G016800 Sobic003G214400--Sobic009G016800 Sobic005G231900 Sobic005G231900 Sobic003G214400--Sobic005G231900 Sobic001G488500 Sobic001G488500 Sobic003G214400--Sobic001G488500 Sobic003G214400--Sobic007G178100 Sobic003G214400--Sobic001G151800 Sobic003G214400--Sobic004G236600 Sobic002G195000 Sobic002G195000 Sobic003G214400--Sobic002G195000
Octagon: transcription factors


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