Gene annotation
Transcriptome id Sobic.003G272600.1
Synonym Sb03g032460
Functional annotation expressed protein
UniProt A0A1B6Q5M4
Pfam -
Panther DB PTHR36484 PTHR36484:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os01g51030.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium KQK09401
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.003G272600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G133700 - -
2 Sobic.001G417600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@actin-depolymerizing factor, putative, expressed K05765: cofilin
3 Sobic.005G019800 ZF-HD protein dimerisation region containing protein, expressed -
4 Sobic.006G147400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@A NAC transcription factor controlling cell collapse and secondary cell wall composition in the stem(PubMedID : 30309900)@We identified D as a single gene encoding a NAC transcription factor that controls the expression of genes involved in plant PCD (programmed cell death).(PubMedID : 30150370)@"we apply fine-mapping and genome-wide association study (GWAS) to identify a candidate gene underlying D, and use nearly isogenic lines (NILs) to characterize the transcriptional, compositional, and agronomic effects of variation at the D locus."(PubMedID : 31245734)@no apical meristem protein, putative, expressed -
5 Sobic.006G139000 carboxyvinyl-carboxyphosphonate phosphorylmutase, putative, expressed -
6 Sobic.001G430900 ubiquitin fusion protein, putative, expressed -
7 Sobic.003G356400 expressed protein -
8 Sobic.003G036700 cytokinin dehydrogenase precursor, putative, expressed K00279: cytokinin dehydrogenase
9 Sobic.003G095600 glycosyltransferase, putative, expressed -
10 Sobic.006G132400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@CHIT3 - Chitinase family protein precursor, expressed K01183: chitinase
11 Sobic.001G280000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsSCP46 - Putative Serine Carboxypeptidase homologue, expressed K16296: serine carboxypeptidase-like clade I
12 Sobic.005G175200 TKL_IRAK_DUF26-lc.25 - DUF26 kinases have homology to DUF26 containing loci, expressed -
13 Sobic.001G395700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ proteins of unknown function domain containing protein, expressed -
14 Sobic.007G178100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@zinc finger, C3HC4 type family protein, expressed K19045: E3 ubiquitin-protein ligase BIG BROTHER and related proteins
15 Sobic.002G058500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@FAD-linked oxidoreductase protein, putative, expressed K18204: D-2-hydroxyglutarate dehydrogenase
16 Sobic.004G214000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@phosphoribosyl transferase, putative, expressed K00759: APRT, adenine phosphoribosyltransferase
17 Sobic.002G195000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@proline-rich protein 6, putative, expressed -
18 Sobic.001G082500 cytochrome P450, putative, expressed -
19 Sobic.003G390900 lipase, putative, expressed -
20 Sobic.001G297600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transporter family protein, putative, expressed -


Gene co-expression network
sample Sobic003G272600 Sobic003G272600 Sobic010G133700 Sobic010G133700 Sobic003G272600--Sobic010G133700 Sobic001G417600 Sobic001G417600 Sobic003G272600--Sobic001G417600 Sobic005G019800 Sobic005G019800 Sobic003G272600--Sobic005G019800 Sobic006G147400 Sobic006G147400 Sobic003G272600--Sobic006G147400 Sobic006G139000 Sobic006G139000 Sobic003G272600--Sobic006G139000 Sobic001G430900 Sobic001G430900 Sobic003G272600--Sobic001G430900 Sobic003G356400 Sobic003G356400 Sobic003G272600--Sobic003G356400 Sobic003G036700 Sobic003G036700 Sobic003G272600--Sobic003G036700 Sobic003G095600 Sobic003G095600 Sobic003G272600--Sobic003G095600 Sobic010G133700--Sobic001G417600 Sobic010G133700--Sobic003G036700 Sobic005G175200 Sobic005G175200 Sobic010G133700--Sobic005G175200 Sobic010G133700--Sobic003G095600 Sobic010G133700--Sobic006G147400 Sobic010G198100 Sobic010G198100 Sobic010G133700--Sobic010G198100 Sobic001G082500 Sobic001G082500 Sobic010G133700--Sobic001G082500 Sobic007G194800 Sobic007G194800 Sobic010G133700--Sobic007G194800 Sobic006G132400 Sobic006G132400 Sobic010G133700--Sobic006G132400 Sobic001G417600--Sobic010G133700 Sobic001G417600--Sobic006G139000 Sobic001G280000 Sobic001G280000 Sobic001G417600--Sobic001G280000 Sobic001G417600--Sobic003G036700 Sobic001G417600--Sobic001G082500 Sobic009G208500 Sobic009G208500 Sobic001G417600--Sobic009G208500 Sobic001G417600--Sobic006G147400 Sobic007G178100 Sobic007G178100 Sobic001G417600--Sobic007G178100 Sobic001G417600--Sobic007G194800 Sobic003G025900 Sobic003G025900 Sobic005G019800--Sobic003G025900 Sobic002G058500 Sobic002G058500 Sobic005G019800--Sobic002G058500 Sobic005G019800--Sobic006G139000 Sobic001G227800 Sobic001G227800 Sobic005G019800--Sobic001G227800 Sobic005G019800--Sobic001G280000 Sobic005G019800--Sobic003G272600 Sobic001G395700 Sobic001G395700 Sobic005G019800--Sobic001G395700 Sobic005G019800--Sobic003G356400 Sobic002G215700 Sobic002G215700 Sobic005G019800--Sobic002G215700 Sobic006G147400--Sobic010G133700 Sobic006G147400--Sobic003G036700 Sobic006G147400--Sobic001G417600 Sobic006G147400--Sobic003G095600 Sobic006G147400--Sobic006G132400 Sobic008G154400 Sobic008G154400 Sobic006G147400--Sobic008G154400 Sobic003G376000 Sobic003G376000 Sobic006G147400--Sobic003G376000 Sobic004G214000 Sobic004G214000 Sobic006G147400--Sobic004G214000 Sobic001G196700 Sobic001G196700 Sobic006G147400--Sobic001G196700 Sobic006G139000--Sobic002G058500 Sobic006G139000--Sobic001G417600 Sobic006G139000--Sobic001G280000 Sobic006G139000--Sobic005G019800 Sobic006G139000--Sobic001G395700 Sobic003G226200 Sobic003G226200 Sobic006G139000--Sobic003G226200 Sobic005G197100 Sobic005G197100 Sobic006G139000--Sobic005G197100 Sobic003G304200 Sobic003G304200 Sobic006G139000--Sobic003G304200 Sobic009G055600 Sobic009G055600 Sobic006G139000--Sobic009G055600 Sobic001G430900--Sobic001G417600 Sobic001G430900--Sobic009G208500 Sobic001G430900--Sobic006G139000 Sobic001G430900--Sobic003G272600 Sobic006G115466 Sobic006G115466 Sobic001G430900--Sobic006G115466 Sobic004G338800 Sobic004G338800 Sobic001G430900--Sobic004G338800 Sobic001G430900--Sobic010G133700 Sobic001G430900--Sobic007G178100 Sobic003G214400 Sobic003G214400 Sobic001G430900--Sobic003G214400 Sobic001G279100 Sobic001G279100 Sobic003G356400--Sobic001G279100 Sobic003G356400--Sobic006G139000 Sobic003G356400--Sobic005G019800 Sobic003G356400--Sobic006G115466 Sobic003G356400--Sobic010G133700 Sobic003G356400--Sobic001G417600 Sobic003G356400--Sobic005G175200 Sobic003G356400--Sobic007G194800 Sobic003G356400--Sobic001G280000 Sobic003G036700--Sobic010G133700 Sobic003G036700--Sobic001G196700 Sobic003G036700--Sobic006G132400 Sobic003G036700--Sobic003G095600 Sobic010G168500 Sobic010G168500 Sobic003G036700--Sobic010G168500 Sobic003G036700--Sobic001G417600 Sobic003G036700--Sobic001G082500 Sobic003G036700--Sobic003G376000 Sobic003G036700--Sobic006G147400 Sobic003G095600--Sobic008G154400 Sobic001G166500 Sobic001G166500 Sobic003G095600--Sobic001G166500 Sobic006G096200 Sobic006G096200 Sobic003G095600--Sobic006G096200 Sobic003G095600--Sobic003G376000 Sobic009G231500 Sobic009G231500 Sobic003G095600--Sobic009G231500 Sobic003G438700 Sobic003G438700 Sobic003G095600--Sobic003G438700 Sobic006G059900 Sobic006G059900 Sobic003G095600--Sobic006G059900 Sobic004G068000 Sobic004G068000 Sobic003G095600--Sobic004G068000 Sobic001G203100 Sobic001G203100 Sobic003G095600--Sobic001G203100
Octagon: transcription factors


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