Gene annotation
Transcriptome id Sobic.005G019800.2,Sobic.005G019800.1
Synonym MIF1, Sb05g001690
Functional annotation ZF-HD protein dimerisation region containing protein, expressed
UniProt C5Y3N8
Pfam PF04770
Panther DB PTHR31948
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G28917 : mini zinc finger 2
RAP-DB (Rice) LOC_Os11g03420.1 : ZF-HD protein dimerisation region containing protein, expressed
MaizeGDB (Corn) Zm00025a028995 , Zm00025a053744
Brachypodium KQJ98684
Barley HORVU3Hr1G096990.1
Wheat -
Populus -


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cDNA sequences
Sobic.005G019800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G025900 - -
2 Sobic.002G058500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@FAD-linked oxidoreductase protein, putative, expressed K18204: D-2-hydroxyglutarate dehydrogenase
3 Sobic.006G139000 carboxyvinyl-carboxyphosphonate phosphorylmutase, putative, expressed -
4 Sobic.001G227800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@expressed protein -
5 Sobic.001G280000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsSCP46 - Putative Serine Carboxypeptidase homologue, expressed K16296: serine carboxypeptidase-like clade I
6 Sobic.003G272600 expressed protein -
7 Sobic.001G395700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ proteins of unknown function domain containing protein, expressed -
8 Sobic.003G356400 expressed protein -
9 Sobic.002G215700 similar to Aldehyde dehydrogenase(PubMedID : 29862293)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Aldehyde dehydrogenase B4(PubMedID : 26320239)@Zinc finger(C3H4-type Ring finger) family protein(PubMedID : 26320239)@a glutamate S-semialdehyde dehydrogenase(PubMedID : 26320239)@aldehyde dehydrogenase, putative, expressed K14085: aldehyde dehydrogenase family 7 member A1
10 Sobic.001G417600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@actin-depolymerizing factor, putative, expressed K05765: cofilin
11 Sobic.010G133700 - -
12 Sobic.006G226400 leucoanthocyanidin reductase, putative, expressed -
13 Sobic.004G320600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glycosyltransferase, putative, expressed -
14 Sobic.003G304200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@phospholipase, patatin family, putative, expressed K14674: TAG lipase / steryl ester hydrolase / phospholipase A2 / LPA acyltransferase
15 Sobic.006G132400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@CHIT3 - Chitinase family protein precursor, expressed K01183: chitinase
16 Sobic.005G175200 TKL_IRAK_DUF26-lc.25 - DUF26 kinases have homology to DUF26 containing loci, expressed -
17 Sobic.008G012400 2-isopropylmalate synthase B, putative, expressed K01649: leuA, 2-isopropylmalate synthase
18 Sobic.006G147400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@A NAC transcription factor controlling cell collapse and secondary cell wall composition in the stem(PubMedID : 30309900)@We identified D as a single gene encoding a NAC transcription factor that controls the expression of genes involved in plant PCD (programmed cell death).(PubMedID : 30150370)@"we apply fine-mapping and genome-wide association study (GWAS) to identify a candidate gene underlying D, and use nearly isogenic lines (NILs) to characterize the transcriptional, compositional, and agronomic effects of variation at the D locus."(PubMedID : 31245734)@no apical meristem protein, putative, expressed -
19 Sobic.001G321000 oxidoreductase, putative, expressed -
20 Sobic.002G195000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@proline-rich protein 6, putative, expressed -


Gene co-expression network
sample Sobic005G019800 Sobic005G019800 Sobic003G025900 Sobic003G025900 Sobic005G019800--Sobic003G025900 Sobic002G058500 Sobic002G058500 Sobic005G019800--Sobic002G058500 Sobic006G139000 Sobic006G139000 Sobic005G019800--Sobic006G139000 Sobic001G227800 Sobic001G227800 Sobic005G019800--Sobic001G227800 Sobic001G280000 Sobic001G280000 Sobic005G019800--Sobic001G280000 Sobic003G272600 Sobic003G272600 Sobic005G019800--Sobic003G272600 Sobic001G395700 Sobic001G395700 Sobic005G019800--Sobic001G395700 Sobic003G356400 Sobic003G356400 Sobic005G019800--Sobic003G356400 Sobic002G215700 Sobic002G215700 Sobic005G019800--Sobic002G215700 Sobic003G025900--Sobic005G019800 Sobic003G025900--Sobic001G227800 Sobic003G025900--Sobic002G058500 Sobic006G127100 Sobic006G127100 Sobic003G025900--Sobic006G127100 Sobic003G025900--Sobic002G215700 Sobic001G321000 Sobic001G321000 Sobic003G025900--Sobic001G321000 Sobic004G320600 Sobic004G320600 Sobic003G025900--Sobic004G320600 Sobic006G226400 Sobic006G226400 Sobic003G025900--Sobic006G226400 Sobic004G321800 Sobic004G321800 Sobic003G025900--Sobic004G321800 Sobic002G058500--Sobic006G139000 Sobic002G058500--Sobic001G227800 Sobic002G058500--Sobic001G395700 Sobic002G058500--Sobic005G019800 Sobic002G058500--Sobic002G215700 Sobic004G101900 Sobic004G101900 Sobic002G058500--Sobic004G101900 Sobic003G226200 Sobic003G226200 Sobic002G058500--Sobic003G226200 Sobic004G124200 Sobic004G124200 Sobic002G058500--Sobic004G124200 Sobic002G058500--Sobic001G280000 Sobic006G139000--Sobic002G058500 Sobic001G417600 Sobic001G417600 Sobic006G139000--Sobic001G417600 Sobic006G139000--Sobic001G280000 Sobic006G139000--Sobic005G019800 Sobic006G139000--Sobic001G395700 Sobic006G139000--Sobic003G226200 Sobic005G197100 Sobic005G197100 Sobic006G139000--Sobic005G197100 Sobic003G304200 Sobic003G304200 Sobic006G139000--Sobic003G304200 Sobic009G055600 Sobic009G055600 Sobic006G139000--Sobic009G055600 Sobic001G227800--Sobic002G215700 Sobic009G226300 Sobic009G226300 Sobic001G227800--Sobic009G226300 Sobic009G054500 Sobic009G054500 Sobic001G227800--Sobic009G054500 Sobic007G187300 Sobic007G187300 Sobic001G227800--Sobic007G187300 Sobic003G259200 Sobic003G259200 Sobic001G227800--Sobic003G259200 Sobic002G304000 Sobic002G304000 Sobic001G227800--Sobic002G304000 Sobic005G018500 Sobic005G018500 Sobic001G227800--Sobic005G018500 Sobic006G100332 Sobic006G100332 Sobic001G227800--Sobic006G100332 Sobic003G219600 Sobic003G219600 Sobic001G227800--Sobic003G219600 Sobic001G280000--Sobic006G139000 Sobic001G280000--Sobic001G417600 Sobic001G280000--Sobic002G058500 Sobic001G280000--Sobic001G227800 Sobic001G162700 Sobic001G162700 Sobic001G280000--Sobic001G162700 Sobic001G280000--Sobic005G019800 Sobic010G098100 Sobic010G098100 Sobic001G280000--Sobic010G098100 Sobic001G251900 Sobic001G251900 Sobic001G280000--Sobic001G251900 Sobic001G280000--Sobic003G259200 Sobic010G133700 Sobic010G133700 Sobic003G272600--Sobic010G133700 Sobic003G272600--Sobic001G417600 Sobic003G272600--Sobic005G019800 Sobic006G147400 Sobic006G147400 Sobic003G272600--Sobic006G147400 Sobic003G272600--Sobic006G139000 Sobic001G430900 Sobic001G430900 Sobic003G272600--Sobic001G430900 Sobic003G272600--Sobic003G356400 Sobic003G036700 Sobic003G036700 Sobic003G272600--Sobic003G036700 Sobic003G095600 Sobic003G095600 Sobic003G272600--Sobic003G095600 Sobic001G395700--Sobic002G058500 Sobic003G012300 Sobic003G012300 Sobic001G395700--Sobic003G012300 Sobic001G395700--Sobic002G215700 Sobic001G395700--Sobic006G139000 Sobic001G395700--Sobic001G227800 Sobic002G195000 Sobic002G195000 Sobic001G395700--Sobic002G195000 Sobic001G395700--Sobic004G101900 Sobic005G231900 Sobic005G231900 Sobic001G395700--Sobic005G231900 Sobic001G395700--Sobic003G226200 Sobic001G279100 Sobic001G279100 Sobic003G356400--Sobic001G279100 Sobic003G356400--Sobic006G139000 Sobic003G356400--Sobic005G019800 Sobic006G115466 Sobic006G115466 Sobic003G356400--Sobic006G115466 Sobic003G356400--Sobic010G133700 Sobic003G356400--Sobic001G417600 Sobic005G175200 Sobic005G175200 Sobic003G356400--Sobic005G175200 Sobic007G194800 Sobic007G194800 Sobic003G356400--Sobic007G194800 Sobic003G356400--Sobic001G280000 Sobic002G215700--Sobic001G227800 Sobic002G215700--Sobic009G054500 Sobic002G215700--Sobic009G226300 Sobic002G215700--Sobic004G101900 Sobic002G215700--Sobic002G304000 Sobic002G215700--Sobic006G100332 Sobic003G138200 Sobic003G138200 Sobic002G215700--Sobic003G138200 Sobic003G148800 Sobic003G148800 Sobic002G215700--Sobic003G148800 Sobic002G215700--Sobic005G018500
Octagon: transcription factors


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