Gene annotation
Transcriptome id Sobic.006G132400.1
Synonym Sb06g021240, ATCHITIV, EP3, CHIV, ATEP3
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
CHIT3 - Chitinase family protein precursor, expressed
UniProt Q93WT1 , Q93WT2 , Q941I5 , C5YBE9
Pfam PF00187 PF00182
Panther DB PTHR22595 PTHR22595:SF60
NCBI CDD KOG4742; Predicted chitinase
KEGG Orthology K01183; chitinase
Gene Ontology GO:0008061; chitin binding GO:0016998cell wall macromolecule catabolic process GO:0006032chitin catabolic process GO:0004568chitinase activity


Orthologs (automatic annotation)
TAIR AT3G54420 : homolog of carrot EP3-3 chitinase
RAP-DB (Rice) LOC_Os04g41680.1 : CHIT3 - Chitinase family protein precursor, expressed
MaizeGDB (Corn) Zm00025a036179 , Zm00025a010855 , Zm00025a010854 , Zm00025a010853 , Zm00025a056371
Brachypodium KQJ83350
Barley HORVU0Hr1G016310.1 , HORVU0Hr1G016310.3 , HORVU0Hr1G016310.2 , HORVU0Hr1G016310.4
Wheat TraesCS6A02G216100 , TraesCS6B02G246800 , TraesCS6D02G199500
Populus -


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cDNA sequences
Sobic.006G132400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G196700 OsProCP3 - Putative Lysosomal Pro-x Carboxypeptidase homologue, expressed -
2 Sobic.003G376000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@amino acid transporter, putative, expressed -
3 Sobic.008G154400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
4 Sobic.005G112066 - -
5 Sobic.007G156300 similar to Abscisic acid 8'-hydroxylase 2(PubMedID : 29862293)@cytochrome P450, putative, expressed -
6 Sobic.002G077500 LTPL169 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
7 Sobic.007G049400 OsFBX381 - F-box domain containing protein, expressed -
8 Sobic.001G326000 expressed protein -
9 Sobic.010G095300 - -
10 Sobic.010G136300 osMFT1 MFT-Like1 homologous to Mother of FT and TFL1 gene@ contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed -
11 Sobic.006G031600 expressed protein -
12 Sobic.005G085700 heparan-alpha-glucosaminide N-acetyltransferase, putative, expressed K10532: heparan-alpha-glucosaminide N-acetyltransferase
13 Sobic.001G277800 transferase family protein, putative, expressed -
14 Sobic.002G077600 LTPL169 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
15 Sobic.009G186400 SSA1 - 2S albumin seed storage family protein precursor, expressed -
16 Sobic.009G009900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@inhibitor I family protein, putative, expressed -
17 Sobic.010G031600 early nodulin 93 ENOD93 protein, putative, expressed -
18 Sobic.002G091800 peptide transporter PTR2, putative, expressed -
19 Sobic.005G140400 - -
20 Sobic.002G344900 MBTB21 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein


Gene co-expression network
sample Sobic006G132400 Sobic006G132400 Sobic001G196700 Sobic001G196700 Sobic006G132400--Sobic001G196700 Sobic003G376000 Sobic003G376000 Sobic006G132400--Sobic003G376000 Sobic008G154400 Sobic008G154400 Sobic006G132400--Sobic008G154400 Sobic005G112066 Sobic005G112066 Sobic006G132400--Sobic005G112066 Sobic007G156300 Sobic007G156300 Sobic006G132400--Sobic007G156300 Sobic002G077500 Sobic002G077500 Sobic006G132400--Sobic002G077500 Sobic007G049400 Sobic007G049400 Sobic006G132400--Sobic007G049400 Sobic001G326000 Sobic001G326000 Sobic006G132400--Sobic001G326000 Sobic010G095300 Sobic010G095300 Sobic006G132400--Sobic010G095300 Sobic001G196700--Sobic006G132400 Sobic001G367700 Sobic001G367700 Sobic001G196700--Sobic001G367700 Sobic010G168500 Sobic010G168500 Sobic001G196700--Sobic010G168500 Sobic001G196700--Sobic003G376000 Sobic002G077600 Sobic002G077600 Sobic001G196700--Sobic002G077600 Sobic001G196700--Sobic007G049400 Sobic001G112250 Sobic001G112250 Sobic001G196700--Sobic001G112250 Sobic001G196700--Sobic005G112066 Sobic001G253501 Sobic001G253501 Sobic001G196700--Sobic001G253501 Sobic010G136300 Sobic010G136300 Sobic003G376000--Sobic010G136300 Sobic010G031600 Sobic010G031600 Sobic003G376000--Sobic010G031600 Sobic001G277800 Sobic001G277800 Sobic003G376000--Sobic001G277800 Sobic009G009800 Sobic009G009800 Sobic003G376000--Sobic009G009800 Sobic006G096200 Sobic006G096200 Sobic003G376000--Sobic006G096200 Sobic003G376000--Sobic002G077500 Sobic003G376000--Sobic005G112066 Sobic003G376000--Sobic001G326000 Sobic003G376000--Sobic007G049400 Sobic008G154400--Sobic001G326000 Sobic009G186400 Sobic009G186400 Sobic008G154400--Sobic009G186400 SobicK043500 SobicK043500 Sobic008G154400--SobicK043500 Sobic006G059900 Sobic006G059900 Sobic008G154400--Sobic006G059900 Sobic008G154400--Sobic002G077500 Sobic003G105600 Sobic003G105600 Sobic008G154400--Sobic003G105600 Sobic003G438700 Sobic003G438700 Sobic008G154400--Sobic003G438700 Sobic007G108000 Sobic007G108000 Sobic008G154400--Sobic007G108000 Sobic004G313800 Sobic004G313800 Sobic008G154400--Sobic004G313800 Sobic005G112066--Sobic002G077500 Sobic005G112066--Sobic007G049400 Sobic005G112066--Sobic001G326000 Sobic005G140400 Sobic005G140400 Sobic005G112066--Sobic005G140400 Sobic002G091800 Sobic002G091800 Sobic005G112066--Sobic002G091800 Sobic005G112066--Sobic009G186400 Sobic005G112066--Sobic007G156300 Sobic002G344900 Sobic002G344900 Sobic005G112066--Sobic002G344900 Sobic006G031600 Sobic006G031600 Sobic005G112066--Sobic006G031600 Sobic007G156300--Sobic006G031600 Sobic007G156300--Sobic001G326000 Sobic005G223200 Sobic005G223200 Sobic007G156300--Sobic005G223200 Sobic007G156300--Sobic004G313800 Sobic003G392500 Sobic003G392500 Sobic007G156300--Sobic003G392500 Sobic007G156300--Sobic005G112066 Sobic007G156300--Sobic002G077500 Sobic010G142300 Sobic010G142300 Sobic007G156300--Sobic010G142300 Sobic009G009900 Sobic009G009900 Sobic007G156300--Sobic009G009900 Sobic002G077500--Sobic009G186400 Sobic002G077500--Sobic005G112066 Sobic002G077500--Sobic001G326000 Sobic002G077500--Sobic007G049400 Sobic002G077500--Sobic003G105600 Sobic007G083300 Sobic007G083300 Sobic002G077500--Sobic007G083300 Sobic002G077500--SobicK043500 Sobic002G077500--Sobic005G140400 Sobic007G070700 Sobic007G070700 Sobic002G077500--Sobic007G070700 Sobic007G049400--Sobic005G112066 Sobic007G049400--Sobic002G077500 Sobic007G049400--Sobic002G077600 Sobic007G049400--Sobic001G253501 Sobic009G245750 Sobic009G245750 Sobic007G049400--Sobic009G245750 Sobic007G049400--Sobic005G140400 Sobic007G049400--Sobic007G070700 Sobic007G049400--Sobic007G083300 Sobic007G049400--Sobic001G112250 Sobic001G326000--Sobic002G077500 Sobic001G326000--Sobic007G156300 Sobic001G326000--Sobic005G112066 Sobic001G326000--Sobic009G186400 Sobic001G326000--Sobic003G105600 Sobic001G326000--Sobic006G031600 Sobic001G326000--Sobic004G313800 Sobic001G326000--Sobic005G223200 Sobic001G326000--Sobic002G344900 Sobic010G095300--Sobic006G031600 Sobic010G095300--Sobic007G156300 Sobic010G095300--Sobic001G326000 Sobic010G095300--Sobic005G112066 Sobic010G095300--Sobic003G392500 Sobic010G095300--Sobic002G077500 Sobic010G095300--Sobic005G223200 Sobic010G095300--Sobic009G009900 Sobic010G095300--Sobic002G344900
Octagon: transcription factors


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