Gene annotation
Transcriptome id Sobic.006G147400.1
Synonym Sb04g036340, NAC074, D,Dry;Dry, D gene;Dry Stalk (D) locus, anac074
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
A NAC transcription factor controlling cell collapse and secondary cell wall composition in the stem (PubMedID : 30309900)
We identified D as a single gene encoding a NAC transcription factor that controls the expression of genes involved in plant PCD (programmed cell death). (PubMedID : 30150370)
"we apply fine-mapping and genome-wide association study (GWAS) to identify a candidate gene underlying D, and use nearly isogenic lines (NILs) to characterize the transcriptional, compositional, and agronomic effects of variation at the D locus." (PubMedID : 31245734)
no apical meristem protein, putative, expressed
UniProt A0A1B6PM15
Pfam PF02365
Panther DB PTHR31744 PTHR31744:SF9
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT4G28530 : NAC domain containing protein 74
RAP-DB (Rice) LOC_Os04g43560.1 : no apical meristem protein, putative, expressed
MaizeGDB (Corn) Zm00025a053477 , Zm00025a025662 , Zm00025a022545 , Zm00025a032846 , Zm00025a040616 , Zm00025a032018 , Zm00025a032141 , Zm00025a041401 , Zm00025a052463 , Zm00025a010699 , Zm00025a000360 , Zm00025a054832 , Zm00025a056511
Brachypodium PNT78278 , KQJ83573 , KQK01269 , KQK21869 , KQK23798 , KQK23882
Barley HORVU4Hr1G051360.5 , HORVU4Hr1G051360.4 , HORVU4Hr1G051360.1 , HORVU4Hr1G051360.3 , HORVU0Hr1G017490.7 , HORVU4Hr1G081430.1 , HORVU4Hr1G081430.2 , HORVU4Hr1G081430.3 , HORVU4Hr1G081430.4 , HORVU0Hr1G017490.4 , HORVU0Hr1G017490.6 , HORVU7Hr1G072670.9 , HORVU2Hr1G089210.6 , HORVU7Hr1G082420.3 , HORVU7Hr1G082420.2 , HORVU7Hr1G082420.4 , HORVU2Hr1G103930.2 , HORVU2Hr1G103930.3 , HORVU2Hr1G103930.1 , HORVU2Hr1G103930.6 , HORVU2Hr1G103930.7 , HORVU2Hr1G103930.4 , HORVU2Hr1G103930.5 , HORVU2Hr1G103930.8 , HORVU2Hr1G103930.9 , HORVU7Hr1G072670.3 , HORVU7Hr1G072670.2 , HORVU7Hr1G072670.7 , HORVU7Hr1G072670.6 , HORVU7Hr1G072670.5 , HORVU7Hr1G072670.4 , HORVU7Hr1G072670.8 , HORVU7Hr1G072670.11 , HORVU7Hr1G072670.10 , HORVU0Hr1G017490.9 , HORVU0Hr1G017490.8 , HORVU0Hr1G017490.1 , HORVU0Hr1G017490.2 , HORVU0Hr1G017490.5 , HORVU2Hr1G089210.4 , HORVU2Hr1G089210.5 , HORVU2Hr1G089210.2 , HORVU2Hr1G089210.3 , HORVU2Hr1G089210.1 , HORVU7Hr1G072670.1
Wheat TraesCS6D02G362800 , TraesCS4B02G328600 , TraesCS7D02G246100 , TraesCS7B02G205600 , TraesCS4B02G328700 , TraesCS4D02G176000 , TraesCS7D02G342300 , TraesCS4B02G328800 , TraesCS6B02G416500 , TraesCS5A02G500400 , TraesCS2A02G462500 , TraesCS7B02G246300 , TraesCS7D02G302000 , TraesCS2A02G566400 , TraesCS2D02G378800 , TraesCS2D02G378800 , TraesCS6A02G378600 , TraesCS7B02G143900 , TraesCS7A02G334800 , TraesCS7A02G247600 , TraesCS1D02G194200 , TraesCS1D02G194200 , TraesCS5A02G500500 , TraesCS7A02G305200 , TraesCS4B02G329100 , TraesCS2B02G484100 , TraesCS4A02G130600 , TraesCS2D02G462900 , TraesCS2D02G576300 , TraesCS4D02G325800 , TraesCS7D02G322700 , TraesCS4B02G174000 , TraesCS6A02G378500 , TraesCS2A02G382400 , TraesCS2A02G382400 , TraesCS1B02G192200 , TraesCS1B02G192200 , TraesCS2B02G399700 , TraesCS2B02G399700 , TraesCS2A02G566000 , TraesCS4A02G499900 , TraesCS4A02G499900 , TraesCS6B02G416300
Populus -


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cDNA sequences
Sobic.006G147400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G133700 - -
2 Sobic.003G036700 cytokinin dehydrogenase precursor, putative, expressed K00279: cytokinin dehydrogenase
3 Sobic.001G417600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@actin-depolymerizing factor, putative, expressed K05765: cofilin
4 Sobic.003G095600 glycosyltransferase, putative, expressed -
5 Sobic.006G132400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@CHIT3 - Chitinase family protein precursor, expressed K01183: chitinase
6 Sobic.008G154400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
7 Sobic.003G376000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@amino acid transporter, putative, expressed -
8 Sobic.004G214000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@phosphoribosyl transferase, putative, expressed K00759: APRT, adenine phosphoribosyltransferase
9 Sobic.001G196700 OsProCP3 - Putative Lysosomal Pro-x Carboxypeptidase homologue, expressed -
10 Sobic.007G194800 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@triacylglycerol lipase precursor, putative, expressed K01052: lysosomal acid lipase/cholesteryl ester hydrolase
11 Sobic.010G034900 expressed protein -
12 Sobic.010G219300 DEFL27 - Defensin and Defensin-like DEFL family -
13 Sobic.008G064000 LTPL36 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
14 Sobic.001G277800 transferase family protein, putative, expressed -
15 Sobic.001G249233 - -
16 Sobic.003G024700 peroxidase precursor, putative, expressed K00430: peroxidase
17 Sobic.005G174900 - -
18 Sobic.001G096500 phosphoesterase, putative, expressed K08073: bifunctional polynucleotide phosphatase/kinase
19 Sobic.010G109700 myb-like DNA-binding domain, SHAQKYF class family protein, expressed -
20 Sobic.005G074800 LTPL33 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -


Gene co-expression network
sample Sobic006G147400 Sobic006G147400 Sobic010G133700 Sobic010G133700 Sobic006G147400--Sobic010G133700 Sobic003G036700 Sobic003G036700 Sobic006G147400--Sobic003G036700 Sobic001G417600 Sobic001G417600 Sobic006G147400--Sobic001G417600 Sobic003G095600 Sobic003G095600 Sobic006G147400--Sobic003G095600 Sobic006G132400 Sobic006G132400 Sobic006G147400--Sobic006G132400 Sobic008G154400 Sobic008G154400 Sobic006G147400--Sobic008G154400 Sobic003G376000 Sobic003G376000 Sobic006G147400--Sobic003G376000 Sobic004G214000 Sobic004G214000 Sobic006G147400--Sobic004G214000 Sobic001G196700 Sobic001G196700 Sobic006G147400--Sobic001G196700 Sobic010G133700--Sobic001G417600 Sobic010G133700--Sobic003G036700 Sobic005G175200 Sobic005G175200 Sobic010G133700--Sobic005G175200 Sobic010G133700--Sobic003G095600 Sobic010G133700--Sobic006G147400 Sobic010G198100 Sobic010G198100 Sobic010G133700--Sobic010G198100 Sobic001G082500 Sobic001G082500 Sobic010G133700--Sobic001G082500 Sobic007G194800 Sobic007G194800 Sobic010G133700--Sobic007G194800 Sobic010G133700--Sobic006G132400 Sobic003G036700--Sobic010G133700 Sobic003G036700--Sobic001G196700 Sobic003G036700--Sobic006G132400 Sobic003G036700--Sobic003G095600 Sobic010G168500 Sobic010G168500 Sobic003G036700--Sobic010G168500 Sobic003G036700--Sobic001G417600 Sobic003G036700--Sobic001G082500 Sobic003G036700--Sobic003G376000 Sobic003G036700--Sobic006G147400 Sobic001G417600--Sobic010G133700 Sobic006G139000 Sobic006G139000 Sobic001G417600--Sobic006G139000 Sobic001G280000 Sobic001G280000 Sobic001G417600--Sobic001G280000 Sobic001G417600--Sobic003G036700 Sobic001G417600--Sobic001G082500 Sobic009G208500 Sobic009G208500 Sobic001G417600--Sobic009G208500 Sobic001G417600--Sobic006G147400 Sobic007G178100 Sobic007G178100 Sobic001G417600--Sobic007G178100 Sobic001G417600--Sobic007G194800 Sobic003G095600--Sobic008G154400 Sobic001G166500 Sobic001G166500 Sobic003G095600--Sobic001G166500 Sobic006G096200 Sobic006G096200 Sobic003G095600--Sobic006G096200 Sobic003G095600--Sobic003G376000 Sobic009G231500 Sobic009G231500 Sobic003G095600--Sobic009G231500 Sobic003G438700 Sobic003G438700 Sobic003G095600--Sobic003G438700 Sobic006G059900 Sobic006G059900 Sobic003G095600--Sobic006G059900 Sobic004G068000 Sobic004G068000 Sobic003G095600--Sobic004G068000 Sobic001G203100 Sobic001G203100 Sobic003G095600--Sobic001G203100 Sobic006G132400--Sobic001G196700 Sobic006G132400--Sobic003G376000 Sobic006G132400--Sobic008G154400 Sobic005G112066 Sobic005G112066 Sobic006G132400--Sobic005G112066 Sobic007G156300 Sobic007G156300 Sobic006G132400--Sobic007G156300 Sobic002G077500 Sobic002G077500 Sobic006G132400--Sobic002G077500 Sobic007G049400 Sobic007G049400 Sobic006G132400--Sobic007G049400 Sobic001G326000 Sobic001G326000 Sobic006G132400--Sobic001G326000 Sobic010G095300 Sobic010G095300 Sobic006G132400--Sobic010G095300 Sobic008G154400--Sobic001G326000 Sobic009G186400 Sobic009G186400 Sobic008G154400--Sobic009G186400 SobicK043500 SobicK043500 Sobic008G154400--SobicK043500 Sobic008G154400--Sobic006G059900 Sobic008G154400--Sobic002G077500 Sobic003G105600 Sobic003G105600 Sobic008G154400--Sobic003G105600 Sobic008G154400--Sobic003G438700 Sobic007G108000 Sobic007G108000 Sobic008G154400--Sobic007G108000 Sobic004G313800 Sobic004G313800 Sobic008G154400--Sobic004G313800 Sobic010G136300 Sobic010G136300 Sobic003G376000--Sobic010G136300 Sobic010G031600 Sobic010G031600 Sobic003G376000--Sobic010G031600 Sobic001G277800 Sobic001G277800 Sobic003G376000--Sobic001G277800 Sobic009G009800 Sobic009G009800 Sobic003G376000--Sobic009G009800 Sobic003G376000--Sobic006G096200 Sobic003G376000--Sobic002G077500 Sobic003G376000--Sobic005G112066 Sobic003G376000--Sobic001G326000 Sobic003G376000--Sobic007G049400 Sobic002G370800 Sobic002G370800 Sobic004G214000--Sobic002G370800 Sobic002G104300 Sobic002G104300 Sobic004G214000--Sobic002G104300 Sobic004G214000--Sobic006G147400 Sobic009G207500 Sobic009G207500 Sobic004G214000--Sobic009G207500 Sobic001G425900 Sobic001G425900 Sobic004G214000--Sobic001G425900 Sobic007G150700 Sobic007G150700 Sobic004G214000--Sobic007G150700 Sobic009G132600 Sobic009G132600 Sobic004G214000--Sobic009G132600 Sobic007G204600 Sobic007G204600 Sobic004G214000--Sobic007G204600 Sobic004G214000--Sobic001G417600 Sobic001G196700--Sobic006G132400 Sobic001G367700 Sobic001G367700 Sobic001G196700--Sobic001G367700 Sobic001G196700--Sobic010G168500 Sobic001G196700--Sobic003G376000 Sobic002G077600 Sobic002G077600 Sobic001G196700--Sobic002G077600 Sobic001G196700--Sobic007G049400 Sobic001G112250 Sobic001G112250 Sobic001G196700--Sobic001G112250 Sobic001G196700--Sobic005G112066 Sobic001G253501 Sobic001G253501 Sobic001G196700--Sobic001G253501
Octagon: transcription factors


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