Gene annotation
Transcriptome id Sobic.004G214000.3,Sobic.004G214000.2,Sobic.004G214000.1
Synonym APT2, PHT1.1, Sb04g025930, ATAPT2
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
phosphoribosyl transferase, putative, expressed
UniProt A0A1Z5RNP4 , C5XXM4 , A0A1Z5RNM4
Pfam PF00156
Panther DB PTHR11776 PTHR11776:SF11
NCBI CDD KOG1712; Adenine phosphoribosyl transferases
KEGG Orthology K00759; APRT, adenine phosphoribosyltransferase
Gene Ontology GO:0009116; nucleoside metabolic process


Orthologs (automatic annotation)
TAIR AT1G80050 : adenine phosphoribosyl transferase 2
RAP-DB (Rice) LOC_Os02g40010.1 : phosphoribosyl transferase, putative, expressed
MaizeGDB (Corn) Zm00025a031951 , Zm00025a021179
Brachypodium KQK00327
Barley HORVU6Hr1G056910.5 , HORVU6Hr1G056910.4 , HORVU6Hr1G056910.7 , HORVU6Hr1G056910.1 , HORVU6Hr1G056910.2
Wheat TraesCS6D02G204800 , TraesCS6A02G230100 , TraesCS6B02G251600 , TraesCS6B02G251600
Populus -


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cDNA sequences
Sobic.004G214000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G370800 tentative name(PubMedID : 31536532)@nuclear transcription factor Y subunit, putative, expressed K08064: NFYA, nuclear transcription factor Y, alpha
2 Sobic.002G104300 FAS1, putative, expressed K10750: chromatin assembly factor 1 subunit A
3 Sobic.006G147400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@A NAC transcription factor controlling cell collapse and secondary cell wall composition in the stem(PubMedID : 30309900)@We identified D as a single gene encoding a NAC transcription factor that controls the expression of genes involved in plant PCD (programmed cell death).(PubMedID : 30150370)@"we apply fine-mapping and genome-wide association study (GWAS) to identify a candidate gene underlying D, and use nearly isogenic lines (NILs) to characterize the transcriptional, compositional, and agronomic effects of variation at the D locus."(PubMedID : 31245734)@no apical meristem protein, putative, expressed -
4 Sobic.009G207500 OsFBX238 - F-box domain containing protein, expressed -
5 Sobic.001G425900 EDM2, putative, expressed -
6 Sobic.007G150700 Leucine Rich Repeat family protein, expressed K15082: DNA repair protein RAD7
7 Sobic.009G132600 methyl-binding domain protein MBD, putative, expressed -
8 Sobic.007G204600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Alpha amylase, catalytic domain containing protein, expressed K01214: ISA, isoamylase
9 Sobic.001G417600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@actin-depolymerizing factor, putative, expressed K05765: cofilin
10 Sobic.009G237700 aldose 1-epimerase, putative, expressed K01792: glucose-6-phosphate 1-epimerase
11 Sobic.009G253800 aspartic proteinase, putative, expressed -
12 Sobic.001G278700 Inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed K00913: inositol-1,3,4-trisphosphate 5/6-kinase / inositol-tetrakisphosphate 1-kinase
13 Sobic.010G273800 "starch biosynthesis, 1,4-alpha-glucan branching enzyme"(PubMedID : 21853065)@1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed K00700: GBE1, 1,4-alpha-glucan branching enzyme
14 Sobic.001G324700 cysteine proteinase inhibitor 8 precursor, putative, expressed -
15 Sobic.010G118200 phosphatidylinositol 3- and 4-kinase family protein, putative, expressed -
16 Sobic.006G271400 methyl-CpG binding domain containing protein, expressed -
17 Sobic.001G053700 PAZ domain containing protein, putative, expressed K11593: ELF2C, eukaryotic translation initiation factor 2C
18 Sobic.005G090500 - -
19 Sobic.007G023600 ATP binding protein, putative, expressed -
20 Sobic.004G294500 expansin precursor, putative, expressed -


Gene co-expression network
sample Sobic004G214000 Sobic004G214000 Sobic002G370800 Sobic002G370800 Sobic004G214000--Sobic002G370800 Sobic002G104300 Sobic002G104300 Sobic004G214000--Sobic002G104300 Sobic006G147400 Sobic006G147400 Sobic004G214000--Sobic006G147400 Sobic009G207500 Sobic009G207500 Sobic004G214000--Sobic009G207500 Sobic001G425900 Sobic001G425900 Sobic004G214000--Sobic001G425900 Sobic007G150700 Sobic007G150700 Sobic004G214000--Sobic007G150700 Sobic009G132600 Sobic009G132600 Sobic004G214000--Sobic009G132600 Sobic007G204600 Sobic007G204600 Sobic004G214000--Sobic007G204600 Sobic001G417600 Sobic001G417600 Sobic004G214000--Sobic001G417600 Sobic002G370800--Sobic001G425900 Sobic001G485200 Sobic001G485200 Sobic002G370800--Sobic001G485200 Sobic010G118200 Sobic010G118200 Sobic002G370800--Sobic010G118200 Sobic004G339900 Sobic004G339900 Sobic002G370800--Sobic004G339900 Sobic004G071050 Sobic004G071050 Sobic002G370800--Sobic004G071050 Sobic007G041200 Sobic007G041200 Sobic002G370800--Sobic007G041200 Sobic001G083900 Sobic001G083900 Sobic002G370800--Sobic001G083900 Sobic002G370800--Sobic002G104300 Sobic009G033500 Sobic009G033500 Sobic002G370800--Sobic009G033500 Sobic002G104300--Sobic001G083900 Sobic002G104300--Sobic001G425900 Sobic004G163700 Sobic004G163700 Sobic002G104300--Sobic004G163700 Sobic002G104300--Sobic004G339900 Sobic010G273800 Sobic010G273800 Sobic002G104300--Sobic010G273800 Sobic001G278700 Sobic001G278700 Sobic002G104300--Sobic001G278700 Sobic004G065850 Sobic004G065850 Sobic002G104300--Sobic004G065850 Sobic002G420400 Sobic002G420400 Sobic002G104300--Sobic002G420400 Sobic004G200400 Sobic004G200400 Sobic002G104300--Sobic004G200400 Sobic010G133700 Sobic010G133700 Sobic006G147400--Sobic010G133700 Sobic003G036700 Sobic003G036700 Sobic006G147400--Sobic003G036700 Sobic006G147400--Sobic001G417600 Sobic003G095600 Sobic003G095600 Sobic006G147400--Sobic003G095600 Sobic006G132400 Sobic006G132400 Sobic006G147400--Sobic006G132400 Sobic008G154400 Sobic008G154400 Sobic006G147400--Sobic008G154400 Sobic003G376000 Sobic003G376000 Sobic006G147400--Sobic003G376000 Sobic006G147400--Sobic004G214000 Sobic001G196700 Sobic001G196700 Sobic006G147400--Sobic001G196700 Sobic005G090500 Sobic005G090500 Sobic009G207500--Sobic005G090500 Sobic006G271400 Sobic006G271400 Sobic009G207500--Sobic006G271400 Sobic002G053100 Sobic002G053100 Sobic009G207500--Sobic002G053100 Sobic010G209300 Sobic010G209300 Sobic009G207500--Sobic010G209300 Sobic006G031000 Sobic006G031000 Sobic009G207500--Sobic006G031000 Sobic009G021300 Sobic009G021300 Sobic009G207500--Sobic009G021300 Sobic005G075000 Sobic005G075000 Sobic009G207500--Sobic005G075000 Sobic001G142600 Sobic001G142600 Sobic009G207500--Sobic001G142600 Sobic002G408700 Sobic002G408700 Sobic009G207500--Sobic002G408700 Sobic001G425900--Sobic010G118200 Sobic001G425900--Sobic006G271400 Sobic001G425900--Sobic009G033500 Sobic010G058000 Sobic010G058000 Sobic001G425900--Sobic010G058000 Sobic002G101200 Sobic002G101200 Sobic001G425900--Sobic002G101200 Sobic002G166800 Sobic002G166800 Sobic001G425900--Sobic002G166800 Sobic001G425900--Sobic010G209300 Sobic001G425900--Sobic006G031000 Sobic007G091200 Sobic007G091200 Sobic001G425900--Sobic007G091200 Sobic001G442200 Sobic001G442200 Sobic007G150700--Sobic001G442200 Sobic004G196800 Sobic004G196800 Sobic007G150700--Sobic004G196800 Sobic005G171800 Sobic005G171800 Sobic007G150700--Sobic005G171800 Sobic004G212350 Sobic004G212350 Sobic007G150700--Sobic004G212350 Sobic005G032500 Sobic005G032500 Sobic007G150700--Sobic005G032500 Sobic010G060100 Sobic010G060100 Sobic007G150700--Sobic010G060100 Sobic002G100000 Sobic002G100000 Sobic007G150700--Sobic002G100000 Sobic007G150700--Sobic001G425900 Sobic010G084800 Sobic010G084800 Sobic007G150700--Sobic010G084800 Sobic010G207400 Sobic010G207400 Sobic009G132600--Sobic010G207400 Sobic009G132600--Sobic007G091200 Sobic009G253800 Sobic009G253800 Sobic009G132600--Sobic009G253800 Sobic009G132600--Sobic001G278700 Sobic009G132600--Sobic010G273800 Sobic009G132600--Sobic001G196700 Sobic009G132600--Sobic009G033500 Sobic003G207600 Sobic003G207600 Sobic009G132600--Sobic003G207600 Sobic009G007500 Sobic009G007500 Sobic009G132600--Sobic009G007500 Sobic003G213100 Sobic003G213100 Sobic007G204600--Sobic003G213100 Sobic002G069800 Sobic002G069800 Sobic007G204600--Sobic002G069800 Sobic003G225800 Sobic003G225800 Sobic007G204600--Sobic003G225800 Sobic005G197000 Sobic005G197000 Sobic007G204600--Sobic005G197000 Sobic002G217000 Sobic002G217000 Sobic007G204600--Sobic002G217000 Sobic009G051201 Sobic009G051201 Sobic007G204600--Sobic009G051201 Sobic005G003100 Sobic005G003100 Sobic007G204600--Sobic005G003100 Sobic007G204600--Sobic002G101200 Sobic005G035500 Sobic005G035500 Sobic007G204600--Sobic005G035500 Sobic001G417600--Sobic010G133700 Sobic006G139000 Sobic006G139000 Sobic001G417600--Sobic006G139000 Sobic001G280000 Sobic001G280000 Sobic001G417600--Sobic001G280000 Sobic001G417600--Sobic003G036700 Sobic001G082500 Sobic001G082500 Sobic001G417600--Sobic001G082500 Sobic009G208500 Sobic009G208500 Sobic001G417600--Sobic009G208500 Sobic001G417600--Sobic006G147400 Sobic007G178100 Sobic007G178100 Sobic001G417600--Sobic007G178100 Sobic007G194800 Sobic007G194800 Sobic001G417600--Sobic007G194800
Octagon: transcription factors


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