Gene annotation
Transcriptome id Sobic.002G370800.1
Synonym SbNF-YA5, HAP2C, NF-YA3, Sb02g038960, Nuclear Factor Y, ATHAP2C
Functional annotation tentative name (PubMedID : 31536532)
nuclear transcription factor Y subunit, putative, expressed
UniProt C5XDY5
Pfam PF02045
Panther DB PTHR12632 PTHR12632:SF8
NCBI CDD -
KEGG Orthology K08064; NFYA, nuclear transcription factor Y, alpha
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT1G72830 : nuclear factor Y, subunit A3
RAP-DB (Rice) LOC_Os07g41720.2 : nuclear transcription factor Y subunit, putative, expressed
MaizeGDB (Corn) Zm00025a048720 , Zm00025a015185 , Zm00025a050104
Brachypodium KQK15300
Barley HORVU2Hr1G032130.28 , HORVU2Hr1G032130.24 , HORVU2Hr1G032130.25 , HORVU2Hr1G032130.26 , HORVU2Hr1G032130.27 , HORVU2Hr1G032130.21 , HORVU2Hr1G032130.22 , HORVU2Hr1G032130.23 , HORVU2Hr1G032130.11 , HORVU2Hr1G032130.13 , HORVU2Hr1G032130.12 , HORVU2Hr1G032130.15 , HORVU2Hr1G032130.14 , HORVU2Hr1G032130.17 , HORVU2Hr1G032130.16 , HORVU2Hr1G032130.19 , HORVU2Hr1G032130.5 , HORVU2Hr1G032130.4 , HORVU2Hr1G032130.7 , HORVU2Hr1G032130.6 , HORVU2Hr1G032130.2 , HORVU2Hr1G032130.9 , HORVU2Hr1G032130.8
Wheat TraesCS2D02G179600 , TraesCS2D02G179600 , TraesCS2D02G179600 , TraesCS2B02G198700
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.002G370800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G425900 EDM2, putative, expressed -
2 Sobic.001G485200 AP2 domain containing protein, expressed K09285: OVM, AP2-like factor, ANT lineage
3 Sobic.010G118200 phosphatidylinositol 3- and 4-kinase family protein, putative, expressed -
4 Sobic.004G339900 expressed protein -
5 Sobic.004G071050 - -
6 Sobic.007G041200 cytochrome P450, putative, expressed -
7 Sobic.001G083900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@alpha-glucan phosphorylast isozyme, putative, expressed K00688: PYG, glycogen phosphorylase
8 Sobic.002G104300 FAS1, putative, expressed K10750: chromatin assembly factor 1 subunit A
9 Sobic.009G033500 peroxidase precursor, putative, expressed K00430: peroxidase
10 Sobic.002G420400 - -
11 Sobic.001G315600 lectin-like receptor kinase, putative, expressed -
12 Sobic.004G214000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@phosphoribosyl transferase, putative, expressed K00759: APRT, adenine phosphoribosyltransferase
13 Sobic.007G091200 wax synthase isoform 1, putative, expressed -
14 Sobic.008G116100 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase,chloroplast precursor, putative, expressed K13832: aroDE, 3-dehydroquinate dehydratase / shikimate dehydrogenase
15 Sobic.004G163700 "1,4-alpha-glucan-branching enzyme 2"(PubMedID : 26186930)@"1,4-alpha-glucan branching enzyme IIB (Zm)"(PubMedID : 27208977)@Starch synthesis(PubMedID : 31624872)@"SbeIIb(Ortholog in maize:Jiang et al., 2013)"(PubMedID : 31659883)@1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed K00700: GBE1, 1,4-alpha-glucan branching enzyme
16 Sobic.010G106601 - K09422: transcription factor MYB, plant
17 Sobic.009G253800 aspartic proteinase, putative, expressed -
18 Sobic.002G234100 2-aminoethanethiol dioxygenase, putative, expressed K10712: cysteamine dioxygenase
19 Sobic.003G412200 inducer of CBF expression 2, putative, expressed -
20 Sobic.007G023600 ATP binding protein, putative, expressed -


Gene co-expression network
sample Sobic002G370800 Sobic002G370800 Sobic001G425900 Sobic001G425900 Sobic002G370800--Sobic001G425900 Sobic001G485200 Sobic001G485200 Sobic002G370800--Sobic001G485200 Sobic010G118200 Sobic010G118200 Sobic002G370800--Sobic010G118200 Sobic004G339900 Sobic004G339900 Sobic002G370800--Sobic004G339900 Sobic004G071050 Sobic004G071050 Sobic002G370800--Sobic004G071050 Sobic007G041200 Sobic007G041200 Sobic002G370800--Sobic007G041200 Sobic001G083900 Sobic001G083900 Sobic002G370800--Sobic001G083900 Sobic002G104300 Sobic002G104300 Sobic002G370800--Sobic002G104300 Sobic009G033500 Sobic009G033500 Sobic002G370800--Sobic009G033500 Sobic001G425900--Sobic010G118200 Sobic006G271400 Sobic006G271400 Sobic001G425900--Sobic006G271400 Sobic001G425900--Sobic009G033500 Sobic010G058000 Sobic010G058000 Sobic001G425900--Sobic010G058000 Sobic002G101200 Sobic002G101200 Sobic001G425900--Sobic002G101200 Sobic002G166800 Sobic002G166800 Sobic001G425900--Sobic002G166800 Sobic010G209300 Sobic010G209300 Sobic001G425900--Sobic010G209300 Sobic006G031000 Sobic006G031000 Sobic001G425900--Sobic006G031000 Sobic007G091200 Sobic007G091200 Sobic001G425900--Sobic007G091200 Sobic006G107900 Sobic006G107900 Sobic001G485200--Sobic006G107900 Sobic003G400400 Sobic003G400400 Sobic001G485200--Sobic003G400400 Sobic001G485200--Sobic004G071050 Sobic002G391100 Sobic002G391100 Sobic001G485200--Sobic002G391100 Sobic001G017500 Sobic001G017500 Sobic001G485200--Sobic001G017500 Sobic001G485200--Sobic004G339900 Sobic010G106601 Sobic010G106601 Sobic001G485200--Sobic010G106601 Sobic002G420400 Sobic002G420400 Sobic001G485200--Sobic002G420400 Sobic002G302300 Sobic002G302300 Sobic001G485200--Sobic002G302300 Sobic010G118200--Sobic007G091200 Sobic006G104800 Sobic006G104800 Sobic010G118200--Sobic006G104800 Sobic004G294100 Sobic004G294100 Sobic010G118200--Sobic004G294100 Sobic010G118200--Sobic001G425900 Sobic008G071900 Sobic008G071900 Sobic010G118200--Sobic008G071900 Sobic001G142600 Sobic001G142600 Sobic010G118200--Sobic001G142600 Sobic009G168300 Sobic009G168300 Sobic010G118200--Sobic009G168300 Sobic010G102900 Sobic010G102900 Sobic010G118200--Sobic010G102900 Sobic001G170500 Sobic001G170500 Sobic010G118200--Sobic001G170500 Sobic004G339900--Sobic002G420400 Sobic004G339900--Sobic004G071050 Sobic004G339900--Sobic001G485200 Sobic001G194100 Sobic001G194100 Sobic004G339900--Sobic001G194100 Sobic010G152000 Sobic010G152000 Sobic004G339900--Sobic010G152000 Sobic004G339900--Sobic007G041200 Sobic008G116100 Sobic008G116100 Sobic004G339900--Sobic008G116100 Sobic004G065800 Sobic004G065800 Sobic004G339900--Sobic004G065800 Sobic004G163700 Sobic004G163700 Sobic004G339900--Sobic004G163700 Sobic004G071050--Sobic001G485200 Sobic004G071050--Sobic010G106601 Sobic004G071050--Sobic002G420400 Sobic004G071050--Sobic004G339900 Sobic004G071050--Sobic009G033500 Sobic009G253800 Sobic009G253800 Sobic004G071050--Sobic009G253800 Sobic004G071050--Sobic004G065800 Sobic004G071050--Sobic006G107900 Sobic004G071050--Sobic007G091200 Sobic007G041200--Sobic008G116100 Sobic007G041200--Sobic009G033500 Sobic010G084800 Sobic010G084800 Sobic007G041200--Sobic010G084800 Sobic010G047300 Sobic010G047300 Sobic007G041200--Sobic010G047300 Sobic002G097601 Sobic002G097601 Sobic007G041200--Sobic002G097601 Sobic006G186300 Sobic006G186300 Sobic007G041200--Sobic006G186300 Sobic007G041200--Sobic007G091200 Sobic008G109600 Sobic008G109600 Sobic007G041200--Sobic008G109600 Sobic010G060100 Sobic010G060100 Sobic007G041200--Sobic010G060100 Sobic001G083900--Sobic002G104300 Sobic001G083900--Sobic001G425900 Sobic010G273800 Sobic010G273800 Sobic001G083900--Sobic010G273800 Sobic001G083900--Sobic004G163700 Sobic009G013200 Sobic009G013200 Sobic001G083900--Sobic009G013200 Sobic003G213100 Sobic003G213100 Sobic001G083900--Sobic003G213100 Sobic003G412200 Sobic003G412200 Sobic001G083900--Sobic003G412200 Sobic007G204600 Sobic007G204600 Sobic001G083900--Sobic007G204600 Sobic005G003100 Sobic005G003100 Sobic001G083900--Sobic005G003100 Sobic002G104300--Sobic001G083900 Sobic002G104300--Sobic001G425900 Sobic002G104300--Sobic004G163700 Sobic002G104300--Sobic004G339900 Sobic002G104300--Sobic010G273800 Sobic001G278700 Sobic001G278700 Sobic002G104300--Sobic001G278700 Sobic004G065850 Sobic004G065850 Sobic002G104300--Sobic004G065850 Sobic002G104300--Sobic002G420400 Sobic004G200400 Sobic004G200400 Sobic002G104300--Sobic004G200400 Sobic009G033500--Sobic007G091200 Sobic009G033500--Sobic007G041200 Sobic009G033500--Sobic010G060100 Sobic009G033500--Sobic001G425900 Sobic009G033500--Sobic010G118200 Sobic009G033500--Sobic010G084800 Sobic007G205400 Sobic007G205400 Sobic009G033500--Sobic007G205400 Sobic004G133600 Sobic004G133600 Sobic009G033500--Sobic004G133600 Sobic001G518700 Sobic001G518700 Sobic009G033500--Sobic001G518700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.