Gene annotation
Transcriptome id Sobic.001G083900.1,Sobic.001G083900.2
Synonym Sb01g007560
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
alpha-glucan phosphorylast isozyme, putative, expressed
UniProt A0A1B6QHW4 , A0A1B6QHW3 , A5Y3S0 , A5Y3T0 , A5Y3T1 , A5Y3S8 , A5Y3R9 , A5Y3R6 , A5Y3M1
Pfam PF00343
Panther DB PTHR11468 PTHR11468:SF8
NCBI CDD -
KEGG Orthology K00688; PYG, glycogen phosphorylase
Gene Ontology GO:0008184; glycogen phosphorylase activity GO:0005975carbohydrate metabolic process


Orthologs (automatic annotation)
TAIR AT3G29320 : Glycosyl transferase, family 35
RAP-DB (Rice) LOC_Os03g55090.1 : alpha-glucan phosphorylast isozyme, putative, expressed
MaizeGDB (Corn) Zm00025a040453 , Zm00025a008226
Brachypodium KQK13102 , PNT74110 , PNT74108 , PNT74109
Barley HORVU5Hr1G096390.4 , HORVU5Hr1G096390.5 , HORVU5Hr1G096390.6 , HORVU5Hr1G096390.7 , HORVU5Hr1G096390.1 , HORVU5Hr1G096390.2 , HORVU5Hr1G096390.3 , HORVU5Hr1G096390.8 , HORVU5Hr1G096390.9
Wheat TraesCS5D02G404500 , TraesCS5A02G395200 , TraesCS5A02G395200 , TraesCS5B02G400000 , TraesCS5B02G400000
Populus PNT40860 , PNT40859 , PNT40858 , PNT40857 , PNT40856


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cDNA sequences
Sobic.001G083900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G104300 FAS1, putative, expressed K10750: chromatin assembly factor 1 subunit A
2 Sobic.001G425900 EDM2, putative, expressed -
3 Sobic.010G273800 "starch biosynthesis, 1,4-alpha-glucan branching enzyme"(PubMedID : 21853065)@1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed K00700: GBE1, 1,4-alpha-glucan branching enzyme
4 Sobic.004G163700 "1,4-alpha-glucan-branching enzyme 2"(PubMedID : 26186930)@"1,4-alpha-glucan branching enzyme IIB (Zm)"(PubMedID : 27208977)@Starch synthesis(PubMedID : 31624872)@"SbeIIb(Ortholog in maize:Jiang et al., 2013)"(PubMedID : 31659883)@1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed K00700: GBE1, 1,4-alpha-glucan branching enzyme
5 Sobic.009G013200 - -
6 Sobic.003G213100 AAA-type ATPase family protein, putative, expressed -
7 Sobic.003G412200 inducer of CBF expression 2, putative, expressed -
8 Sobic.007G204600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Alpha amylase, catalytic domain containing protein, expressed K01214: ISA, isoamylase
9 Sobic.005G003100 expressed protein -
10 Sobic.007G041200 cytochrome P450, putative, expressed -
11 Sobic.010G118200 phosphatidylinositol 3- and 4-kinase family protein, putative, expressed -
12 Sobic.006G046300 histidine kinase, putative, expressed -
13 Sobic.007G122932 - -
14 Sobic.005G052100 expressed protein -
15 Sobic.003G225800 AAA-type ATPase family protein, putative, expressed -
16 Sobic.006G161300 vacuolar-processing enzyme precursor, putative, expressed K01369: legumain
17 Sobic.002G069800 OsFBX221 - F-box domain containing protein, expressed -
18 Sobic.002G101200 zinc finger, C3HC4 type domain containing protein, expressed K10638: UHRF1, E3 ubiquitin-protein ligase UHRF1
19 Sobic.001G330600 NAD dependent epimerase/dehydratase family protein, putative, expressed -
20 Sobic.005G075000 LTPL33 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -


Gene co-expression network
sample Sobic001G083900 Sobic001G083900 Sobic002G104300 Sobic002G104300 Sobic001G083900--Sobic002G104300 Sobic001G425900 Sobic001G425900 Sobic001G083900--Sobic001G425900 Sobic010G273800 Sobic010G273800 Sobic001G083900--Sobic010G273800 Sobic004G163700 Sobic004G163700 Sobic001G083900--Sobic004G163700 Sobic009G013200 Sobic009G013200 Sobic001G083900--Sobic009G013200 Sobic003G213100 Sobic003G213100 Sobic001G083900--Sobic003G213100 Sobic003G412200 Sobic003G412200 Sobic001G083900--Sobic003G412200 Sobic007G204600 Sobic007G204600 Sobic001G083900--Sobic007G204600 Sobic005G003100 Sobic005G003100 Sobic001G083900--Sobic005G003100 Sobic002G104300--Sobic001G083900 Sobic002G104300--Sobic001G425900 Sobic002G104300--Sobic004G163700 Sobic004G339900 Sobic004G339900 Sobic002G104300--Sobic004G339900 Sobic002G104300--Sobic010G273800 Sobic001G278700 Sobic001G278700 Sobic002G104300--Sobic001G278700 Sobic004G065850 Sobic004G065850 Sobic002G104300--Sobic004G065850 Sobic002G420400 Sobic002G420400 Sobic002G104300--Sobic002G420400 Sobic004G200400 Sobic004G200400 Sobic002G104300--Sobic004G200400 Sobic010G118200 Sobic010G118200 Sobic001G425900--Sobic010G118200 Sobic006G271400 Sobic006G271400 Sobic001G425900--Sobic006G271400 Sobic009G033500 Sobic009G033500 Sobic001G425900--Sobic009G033500 Sobic010G058000 Sobic010G058000 Sobic001G425900--Sobic010G058000 Sobic002G101200 Sobic002G101200 Sobic001G425900--Sobic002G101200 Sobic002G166800 Sobic002G166800 Sobic001G425900--Sobic002G166800 Sobic010G209300 Sobic010G209300 Sobic001G425900--Sobic010G209300 Sobic006G031000 Sobic006G031000 Sobic001G425900--Sobic006G031000 Sobic007G091200 Sobic007G091200 Sobic001G425900--Sobic007G091200 Sobic006G015800 Sobic006G015800 Sobic010G273800--Sobic006G015800 Sobic003G092600 Sobic003G092600 Sobic010G273800--Sobic003G092600 Sobic004G262100 Sobic004G262100 Sobic010G273800--Sobic004G262100 Sobic001G324800 Sobic001G324800 Sobic010G273800--Sobic001G324800 Sobic010G093400 Sobic010G093400 Sobic010G273800--Sobic010G093400 Sobic002G015800 Sobic002G015800 Sobic010G273800--Sobic002G015800 Sobic009G207500 Sobic009G207500 Sobic010G273800--Sobic009G207500 Sobic010G273800--Sobic001G425900 Sobic004G294100 Sobic004G294100 Sobic010G273800--Sobic004G294100 Sobic001G194100 Sobic001G194100 Sobic004G163700--Sobic001G194100 Sobic004G163700--Sobic006G015800 Sobic004G163700--Sobic004G262100 Sobic004G163700--Sobic001G425900 Sobic006G046300 Sobic006G046300 Sobic004G163700--Sobic006G046300 Sobic007G041200 Sobic007G041200 Sobic004G163700--Sobic007G041200 Sobic004G163700--Sobic003G092600 Sobic004G163700--Sobic010G273800 Sobic004G163700--Sobic001G083900 Sobic001G330600 Sobic001G330600 Sobic009G013200--Sobic001G330600 Sobic007G122932 Sobic007G122932 Sobic009G013200--Sobic007G122932 Sobic002G147500 Sobic002G147500 Sobic009G013200--Sobic002G147500 Sobic009G013200--Sobic003G213100 Sobic005G075000 Sobic005G075000 Sobic009G013200--Sobic005G075000 Sobic009G013200--Sobic005G003100 Sobic007G123000 Sobic007G123000 Sobic009G013200--Sobic007G123000 Sobic009G051201 Sobic009G051201 Sobic009G013200--Sobic009G051201 Sobic003G225800 Sobic003G225800 Sobic009G013200--Sobic003G225800 Sobic003G213100--Sobic003G225800 Sobic005G197000 Sobic005G197000 Sobic003G213100--Sobic005G197000 Sobic002G217000 Sobic002G217000 Sobic003G213100--Sobic002G217000 Sobic003G213100--Sobic009G051201 Sobic002G069800 Sobic002G069800 Sobic003G213100--Sobic002G069800 Sobic005G089101 Sobic005G089101 Sobic003G213100--Sobic005G089101 Sobic003G213100--Sobic005G003100 Sobic003G213100--Sobic009G013200 Sobic003G213100--Sobic002G101200 Sobic003G230500 Sobic003G230500 Sobic003G412200--Sobic003G230500 Sobic007G147300 Sobic007G147300 Sobic003G412200--Sobic007G147300 Sobic003G412200--Sobic007G122932 Sobic009G021300 Sobic009G021300 Sobic003G412200--Sobic009G021300 Sobic008G001700 Sobic008G001700 Sobic003G412200--Sobic008G001700 Sobic008G071900 Sobic008G071900 Sobic003G412200--Sobic008G071900 Sobic003G412200--Sobic007G123000 Sobic005G001500 Sobic005G001500 Sobic003G412200--Sobic005G001500 Sobic009G086800 Sobic009G086800 Sobic003G412200--Sobic009G086800 Sobic007G204600--Sobic003G213100 Sobic007G204600--Sobic002G069800 Sobic007G204600--Sobic003G225800 Sobic007G204600--Sobic005G197000 Sobic007G204600--Sobic002G217000 Sobic007G204600--Sobic009G051201 Sobic007G204600--Sobic005G003100 Sobic007G204600--Sobic002G101200 Sobic005G035500 Sobic005G035500 Sobic007G204600--Sobic005G035500 Sobic005G003100--Sobic003G213100 Sobic005G003100--Sobic002G069800 Sobic005G003100--Sobic009G051201 Sobic005G003100--Sobic005G075000 Sobic005G003100--Sobic003G225800 Sobic005G003100--Sobic009G013200 Sobic005G003100--Sobic002G101200 Sobic005G003100--Sobic002G217000 Sobic005G052100 Sobic005G052100 Sobic005G003100--Sobic005G052100
Octagon: transcription factors


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