Gene annotation
Transcriptome id Sobic.007G204600.1
Synonym ISA1, Sb07g027200, ATISA1
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
Alpha amylase, catalytic domain containing protein, expressed
UniProt A0T329 , A0A1B6PJ17 , A0T328 , A0T371 , A0T327 , A0T350 , A0T341
Pfam PF02922 PF00128
Panther DB PTHR10357 PTHR10357:SF169
NCBI CDD -
KEGG Orthology K01214; ISA, isoamylase
Gene Ontology GO:0005975; carbohydrate metabolic process GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds GO:0003824catalytic activity


Orthologs (automatic annotation)
TAIR AT2G39930 : isoamylase 1
RAP-DB (Rice) LOC_Os08g40930.1 : Alpha amylase, catalytic domain containing protein, expressed
MaizeGDB (Corn) Zm00025a030338 , Zm00025a011885 , Zm00025a031315
Brachypodium KQJ98937 , KQJ98992
Barley HORVU7Hr1G051710.14 , HORVU7Hr1G051710.13 , HORVU7Hr1G051710.12 , HORVU7Hr1G051710.11 , HORVU7Hr1G051710.10 , HORVU7Hr1G051710.7 , HORVU7Hr1G051710.4 , HORVU7Hr1G051710.9 , HORVU7Hr1G051710.8 , HORVU7Hr1G051710.6 , HORVU7Hr1G051710.5 , HORVU7Hr1G051710.3 , HORVU7Hr1G051710.2 , HORVU7Hr1G051710.1
Wheat TraesCS7A02G251400 , TraesCS7A02G251400 , TraesCS7D02G249500 , TraesCS7D02G249500 , TraesCS7B02G139700 , TraesCS7B02G139700
Populus PNS94211 , PNS94210 , PNS94208 , PNS94209 , PNS94207 , PNT30236 , PNT30237 , PNT30235


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cDNA sequences
Sobic.007G204600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G213100 AAA-type ATPase family protein, putative, expressed -
2 Sobic.002G069800 OsFBX221 - F-box domain containing protein, expressed -
3 Sobic.003G225800 AAA-type ATPase family protein, putative, expressed -
4 Sobic.005G197000 RNA recognition motif containing protein, putative, expressed K14411: RNA-binding protein Musashi
5 Sobic.002G217000 expressed protein -
6 Sobic.009G051201 - -
7 Sobic.005G003100 expressed protein -
8 Sobic.002G101200 zinc finger, C3HC4 type domain containing protein, expressed K10638: UHRF1, E3 ubiquitin-protein ligase UHRF1
9 Sobic.005G035500 expressed protein -
10 Sobic.006G004100 no apical meristem protein, putative, expressed -
11 Sobic.002G058900 OsFBX237 - F-box domain containing protein, expressed -
12 Sobic.005G089101 - K08066: NFYC, nuclear transcription factor Y, gamma
13 Sobic.006G161300 vacuolar-processing enzyme precursor, putative, expressed K01369: legumain
14 Sobic.003G291100 - -
15 Sobic.009G013200 - -
16 Sobic.002G100000 OsFBL33 - F-box domain and LRR containing protein, expressed -
17 Sobic.007G054700 tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed K08066: NFYC, nuclear transcription factor Y, gamma
18 Sobic.002G059500 OsFBX237 - F-box domain containing protein, expressed -
19 Sobic.007G037200 expressed protein -
20 Sobic.005G032500 ASH-like SPRY domain containing protein, putative, expressed K14964: Set1/Ash2 histone methyltransferase complex subunit ASH2


Gene co-expression network
sample Sobic007G204600 Sobic007G204600 Sobic003G213100 Sobic003G213100 Sobic007G204600--Sobic003G213100 Sobic002G069800 Sobic002G069800 Sobic007G204600--Sobic002G069800 Sobic003G225800 Sobic003G225800 Sobic007G204600--Sobic003G225800 Sobic005G197000 Sobic005G197000 Sobic007G204600--Sobic005G197000 Sobic002G217000 Sobic002G217000 Sobic007G204600--Sobic002G217000 Sobic009G051201 Sobic009G051201 Sobic007G204600--Sobic009G051201 Sobic005G003100 Sobic005G003100 Sobic007G204600--Sobic005G003100 Sobic002G101200 Sobic002G101200 Sobic007G204600--Sobic002G101200 Sobic005G035500 Sobic005G035500 Sobic007G204600--Sobic005G035500 Sobic003G213100--Sobic003G225800 Sobic003G213100--Sobic005G197000 Sobic003G213100--Sobic002G217000 Sobic003G213100--Sobic009G051201 Sobic003G213100--Sobic002G069800 Sobic005G089101 Sobic005G089101 Sobic003G213100--Sobic005G089101 Sobic003G213100--Sobic005G003100 Sobic009G013200 Sobic009G013200 Sobic003G213100--Sobic009G013200 Sobic003G213100--Sobic002G101200 Sobic002G069800--Sobic003G213100 Sobic002G069800--Sobic005G003100 Sobic002G069800--Sobic009G051201 Sobic005G052100 Sobic005G052100 Sobic002G069800--Sobic005G052100 Sobic007G069800 Sobic007G069800 Sobic002G069800--Sobic007G069800 Sobic002G069800--Sobic005G035500 Sobic002G069800--Sobic003G225800 Sobic002G069800--Sobic005G197000 Sobic002G069800--Sobic002G217000 Sobic003G225800--Sobic005G197000 Sobic003G225800--Sobic003G213100 Sobic003G225800--Sobic002G217000 Sobic003G225800--Sobic005G089101 Sobic002G100000 Sobic002G100000 Sobic003G225800--Sobic002G100000 Sobic006G004100 Sobic006G004100 Sobic003G225800--Sobic006G004100 Sobic003G225800--Sobic002G101200 Sobic003G307600 Sobic003G307600 Sobic003G225800--Sobic003G307600 Sobic007G037200 Sobic007G037200 Sobic003G225800--Sobic007G037200 Sobic005G197000--Sobic003G225800 Sobic005G197000--Sobic002G217000 Sobic005G197000--Sobic003G213100 Sobic005G197000--Sobic005G089101 Sobic005G197000--Sobic006G004100 Sobic005G197000--Sobic002G100000 Sobic004G220900 Sobic004G220900 Sobic005G197000--Sobic004G220900 Sobic002G058900 Sobic002G058900 Sobic005G197000--Sobic002G058900 Sobic005G197000--Sobic007G037200 Sobic002G217000--Sobic003G225800 Sobic002G217000--Sobic002G101200 Sobic002G217000--Sobic005G197000 Sobic002G217000--Sobic002G058900 Sobic002G217000--Sobic007G037200 Sobic002G217000--Sobic005G089101 Sobic005G032500 Sobic005G032500 Sobic002G217000--Sobic005G032500 Sobic002G217000--Sobic002G100000 Sobic002G217000--Sobic006G004100 Sobic009G051201--Sobic003G213100 Sobic009G051201--Sobic003G225800 Sobic009G051201--Sobic002G101200 Sobic009G051201--Sobic002G217000 Sobic009G051201--Sobic005G197000 Sobic009G051201--Sobic002G069800 Sobic009G051201--Sobic005G003100 Sobic007G209700 Sobic007G209700 Sobic009G051201--Sobic007G209700 Sobic009G051201--Sobic009G013200 Sobic005G003100--Sobic003G213100 Sobic005G003100--Sobic002G069800 Sobic005G003100--Sobic009G051201 Sobic005G075000 Sobic005G075000 Sobic005G003100--Sobic005G075000 Sobic005G003100--Sobic003G225800 Sobic005G003100--Sobic009G013200 Sobic005G003100--Sobic002G101200 Sobic005G003100--Sobic002G217000 Sobic005G003100--Sobic005G052100 Sobic002G101200--Sobic002G217000 Sobic002G101200--Sobic005G032500 Sobic002G101200--Sobic002G058900 Sobic002G101200--Sobic007G037200 Sobic002G166800 Sobic002G166800 Sobic002G101200--Sobic002G166800 Sobic002G101200--Sobic002G100000 Sobic002G101200--Sobic003G225800 Sobic006G031000 Sobic006G031000 Sobic002G101200--Sobic006G031000 Sobic002G101200--Sobic009G051201 Sobic002G059500 Sobic002G059500 Sobic005G035500--Sobic002G059500 Sobic006G040101 Sobic006G040101 Sobic005G035500--Sobic006G040101 Sobic007G025100 Sobic007G025100 Sobic005G035500--Sobic007G025100 Sobic002G300900 Sobic002G300900 Sobic005G035500--Sobic002G300900 Sobic005G035500--Sobic006G004100 Sobic010G111400 Sobic010G111400 Sobic005G035500--Sobic010G111400 Sobic005G035500--Sobic002G058900 Sobic007G131100 Sobic007G131100 Sobic005G035500--Sobic007G131100 Sobic003G266100 Sobic003G266100 Sobic005G035500--Sobic003G266100
Octagon: transcription factors


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