Gene annotation
Transcriptome id Sobic.009G132600.3
Synonym MBD1, Sb09g019900
Functional annotation methyl-binding domain protein MBD, putative, expressed
UniProt A0A1Z5R2K1
Pfam PF07496
Panther DB PTHR12396
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT4G22745 : methyl-CPG-binding domain 1
RAP-DB (Rice) LOC_Os05g33550.1 : methyl-binding domain protein MBD, putative, expressed
MaizeGDB (Corn) Zm00025a037487
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G207400 protein kinase domain containing protein, expressed -
2 Sobic.007G091200 wax synthase isoform 1, putative, expressed -
3 Sobic.009G253800 aspartic proteinase, putative, expressed -
4 Sobic.001G278700 Inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed K00913: inositol-1,3,4-trisphosphate 5/6-kinase / inositol-tetrakisphosphate 1-kinase
5 Sobic.010G273800 "starch biosynthesis, 1,4-alpha-glucan branching enzyme"(PubMedID : 21853065)@1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed K00700: GBE1, 1,4-alpha-glucan branching enzyme
6 Sobic.001G196700 OsProCP3 - Putative Lysosomal Pro-x Carboxypeptidase homologue, expressed -
7 Sobic.009G033500 peroxidase precursor, putative, expressed K00430: peroxidase
8 Sobic.003G207600 OsFBD5 - F-box and FBD domain containing protein, expressed -
9 Sobic.009G007500 DNA binding protein, putative, expressed -
10 Sobic.008G088450 - -
11 Sobic.004G075700 PHD-finger domain containing protein, putative, expressed -
12 Sobic.002G403200 ankyrin repeat domain containing protein, putative, expressed -
13 Sobic.004G196800 tetratricopeptide repeat containing protein, putative, expressed -
14 Sobic.001G518700 DEF8 - Defensin and Defensin-like DEFL family, expressed -
15 Sobic.008G039700 expressed protein -
16 Sobic.003G159500 zinc finger, C3HC4 type domain containing protein, expressed -
17 Sobic.002G078500 LTPL169 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
18 Sobic.004G294100 ZOS2-14 - C2H2 zinc finger protein, expressed -
19 Sobic.009G030400 eyes absent homolog 4, putative, expressed -
20 Sobic.001G175501 - -


Gene co-expression network
sample Sobic009G132600 Sobic009G132600 Sobic010G207400 Sobic010G207400 Sobic009G132600--Sobic010G207400 Sobic007G091200 Sobic007G091200 Sobic009G132600--Sobic007G091200 Sobic009G253800 Sobic009G253800 Sobic009G132600--Sobic009G253800 Sobic001G278700 Sobic001G278700 Sobic009G132600--Sobic001G278700 Sobic010G273800 Sobic010G273800 Sobic009G132600--Sobic010G273800 Sobic001G196700 Sobic001G196700 Sobic009G132600--Sobic001G196700 Sobic009G033500 Sobic009G033500 Sobic009G132600--Sobic009G033500 Sobic003G207600 Sobic003G207600 Sobic009G132600--Sobic003G207600 Sobic009G007500 Sobic009G007500 Sobic009G132600--Sobic009G007500 Sobic005G171800 Sobic005G171800 Sobic010G207400--Sobic005G171800 Sobic004G294100 Sobic004G294100 Sobic010G207400--Sobic004G294100 Sobic009G025100 Sobic009G025100 Sobic010G207400--Sobic009G025100 Sobic003G230500 Sobic003G230500 Sobic010G207400--Sobic003G230500 Sobic010G227400 Sobic010G227400 Sobic010G207400--Sobic010G227400 Sobic010G168500 Sobic010G168500 Sobic010G207400--Sobic010G168500 Sobic009G077250 Sobic009G077250 Sobic010G207400--Sobic009G077250 Sobic008G039700 Sobic008G039700 Sobic010G207400--Sobic008G039700 Sobic001G158600 Sobic001G158600 Sobic010G207400--Sobic001G158600 Sobic007G091200--Sobic009G033500 Sobic001G518700 Sobic001G518700 Sobic007G091200--Sobic001G518700 Sobic007G091200--Sobic009G007500 Sobic004G294500 Sobic004G294500 Sobic007G091200--Sobic004G294500 Sobic003G189466 Sobic003G189466 Sobic007G091200--Sobic003G189466 Sobic008G081700 Sobic008G081700 Sobic007G091200--Sobic008G081700 Sobic008G088450 Sobic008G088450 Sobic007G091200--Sobic008G088450 Sobic010G118200 Sobic010G118200 Sobic007G091200--Sobic010G118200 Sobic007G091200--Sobic009G253800 Sobic009G253800--Sobic004G294500 Sobic004G190200 Sobic004G190200 Sobic009G253800--Sobic004G190200 Sobic009G253800--Sobic009G007500 Sobic009G253800--Sobic007G091200 Sobic009G253800--Sobic001G518700 Sobic002G141450 Sobic002G141450 Sobic009G253800--Sobic002G141450 Sobic001G170500 Sobic001G170500 Sobic009G253800--Sobic001G170500 Sobic009G253800--Sobic008G088450 Sobic007G023600 Sobic007G023600 Sobic009G253800--Sobic007G023600 Sobic004G075700 Sobic004G075700 Sobic001G278700--Sobic004G075700 Sobic006G015800 Sobic006G015800 Sobic001G278700--Sobic006G015800 Sobic001G278700--Sobic010G273800 Sobic002G354800 Sobic002G354800 Sobic001G278700--Sobic002G354800 Sobic007G150700 Sobic007G150700 Sobic001G278700--Sobic007G150700 Sobic002G230400 Sobic002G230400 Sobic001G278700--Sobic002G230400 Sobic003G055200 Sobic003G055200 Sobic001G278700--Sobic003G055200 Sobic004G163700 Sobic004G163700 Sobic001G278700--Sobic004G163700 Sobic006G161300 Sobic006G161300 Sobic001G278700--Sobic006G161300 Sobic010G273800--Sobic006G015800 Sobic003G092600 Sobic003G092600 Sobic010G273800--Sobic003G092600 Sobic004G262100 Sobic004G262100 Sobic010G273800--Sobic004G262100 Sobic001G324800 Sobic001G324800 Sobic010G273800--Sobic001G324800 Sobic010G093400 Sobic010G093400 Sobic010G273800--Sobic010G093400 Sobic002G015800 Sobic002G015800 Sobic010G273800--Sobic002G015800 Sobic009G207500 Sobic009G207500 Sobic010G273800--Sobic009G207500 Sobic001G425900 Sobic001G425900 Sobic010G273800--Sobic001G425900 Sobic010G273800--Sobic004G294100 Sobic006G132400 Sobic006G132400 Sobic001G196700--Sobic006G132400 Sobic001G367700 Sobic001G367700 Sobic001G196700--Sobic001G367700 Sobic001G196700--Sobic010G168500 Sobic003G376000 Sobic003G376000 Sobic001G196700--Sobic003G376000 Sobic002G077600 Sobic002G077600 Sobic001G196700--Sobic002G077600 Sobic007G049400 Sobic007G049400 Sobic001G196700--Sobic007G049400 Sobic001G112250 Sobic001G112250 Sobic001G196700--Sobic001G112250 Sobic005G112066 Sobic005G112066 Sobic001G196700--Sobic005G112066 Sobic001G253501 Sobic001G253501 Sobic001G196700--Sobic001G253501 Sobic009G033500--Sobic007G091200 Sobic007G041200 Sobic007G041200 Sobic009G033500--Sobic007G041200 Sobic010G060100 Sobic010G060100 Sobic009G033500--Sobic010G060100 Sobic009G033500--Sobic001G425900 Sobic009G033500--Sobic010G118200 Sobic010G084800 Sobic010G084800 Sobic009G033500--Sobic010G084800 Sobic007G205400 Sobic007G205400 Sobic009G033500--Sobic007G205400 Sobic004G133600 Sobic004G133600 Sobic009G033500--Sobic004G133600 Sobic009G033500--Sobic001G518700 Sobic005G173800 Sobic005G173800 Sobic003G207600--Sobic005G173800 Sobic003G321500 Sobic003G321500 Sobic003G207600--Sobic003G321500 Sobic001G246400 Sobic001G246400 Sobic003G207600--Sobic001G246400 Sobic010G085700 Sobic010G085700 Sobic003G207600--Sobic010G085700 Sobic009G090250 Sobic009G090250 Sobic003G207600--Sobic009G090250 Sobic003G207100 Sobic003G207100 Sobic003G207600--Sobic003G207100 Sobic009G040000 Sobic009G040000 Sobic003G207600--Sobic009G040000 Sobic008G081000 Sobic008G081000 Sobic003G207600--Sobic008G081000 Sobic005G174500 Sobic005G174500 Sobic003G207600--Sobic005G174500 Sobic009G007500--Sobic008G088450 Sobic009G007500--Sobic004G294500 Sobic009G007500--Sobic001G518700 Sobic006G062700 Sobic006G062700 Sobic009G007500--Sobic006G062700 Sobic008G103066 Sobic008G103066 Sobic009G007500--Sobic008G103066 Sobic009G007500--Sobic001G112250 Sobic001G249233 Sobic001G249233 Sobic009G007500--Sobic001G249233 Sobic005G174900 Sobic005G174900 Sobic009G007500--Sobic005G174900 Sobic003G024700 Sobic003G024700 Sobic009G007500--Sobic003G024700
Octagon: transcription factors


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