Gene annotation
Transcriptome id Sobic.007G150700.1
Synonym Sb07g022470
Functional annotation Leucine Rich Repeat family protein, expressed
UniProt A0A1B6PI41
Pfam -
Panther DB PTHR24006 PTHR24006:SF493
NCBI CDD KOG1947; Leucine rich repeat proteins, some proteins contain F-box
KEGG Orthology K15082; DNA repair protein RAD7
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G06040 : -
RAP-DB (Rice) LOC_Os11g42160.1 : F-box/LRR-repeat protein 3, putative, expressed
MaizeGDB (Corn) Zm00025a005739 , Zm00025a030748 , Zm00025a021220
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.007G150700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G442200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Ser/Thr protein phosphatase family protein, putative, expressed K14379: tartrate-resistant acid phosphatase type 5
2 Sobic.004G196800 tetratricopeptide repeat containing protein, putative, expressed -
3 Sobic.005G171800 OsFBDUF20 - F-box and DUF domain containing protein, expressed -
4 Sobic.004G212350 - -
5 Sobic.005G032500 ASH-like SPRY domain containing protein, putative, expressed K14964: Set1/Ash2 histone methyltransferase complex subunit ASH2
6 Sobic.010G060100 leucoanthocyanidin dioxygenase, putative, expressed -
7 Sobic.002G100000 OsFBL33 - F-box domain and LRR containing protein, expressed -
8 Sobic.001G425900 EDM2, putative, expressed -
9 Sobic.010G084800 - -
10 Sobic.006G015800 "1,4-alpha-glucan branching enzyme/starch branching enzyme II, PULLULANASE 1, CHLOROPLASTIC"(PubMedID : 21853065)@Alpha amylase, catalytic domain containing protein, expressed -
11 Sobic.003G307600 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
12 Sobic.009G033500 peroxidase precursor, putative, expressed K00430: peroxidase
13 Sobic.002G101200 zinc finger, C3HC4 type domain containing protein, expressed K10638: UHRF1, E3 ubiquitin-protein ligase UHRF1
14 Sobic.005G089101 - K08066: NFYC, nuclear transcription factor Y, gamma
15 Sobic.007G172100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@vignain precursor, putative, expressed K16292: CEP, KDEL-tailed cysteine endopeptidase
16 Sobic.002G217000 expressed protein -
17 Sobic.002G293100 ZOS9-17 - C2H2 zinc finger protein, expressed -
18 Sobic.010G047300 GDSL-like lipase/acylhydrolase, putative, expressed -
19 Sobic.007G037200 expressed protein -
20 Sobic.009G025100 transporter, putative, expressed -


Gene co-expression network
sample Sobic007G150700 Sobic007G150700 Sobic001G442200 Sobic001G442200 Sobic007G150700--Sobic001G442200 Sobic004G196800 Sobic004G196800 Sobic007G150700--Sobic004G196800 Sobic005G171800 Sobic005G171800 Sobic007G150700--Sobic005G171800 Sobic004G212350 Sobic004G212350 Sobic007G150700--Sobic004G212350 Sobic005G032500 Sobic005G032500 Sobic007G150700--Sobic005G032500 Sobic010G060100 Sobic010G060100 Sobic007G150700--Sobic010G060100 Sobic002G100000 Sobic002G100000 Sobic007G150700--Sobic002G100000 Sobic001G425900 Sobic001G425900 Sobic007G150700--Sobic001G425900 Sobic010G084800 Sobic010G084800 Sobic007G150700--Sobic010G084800 Sobic001G442200--Sobic007G150700 Sobic001G442200--Sobic004G196800 Sobic005G098700 Sobic005G098700 Sobic001G442200--Sobic005G098700 Sobic010G168500 Sobic010G168500 Sobic001G442200--Sobic010G168500 Sobic007G172100 Sobic007G172100 Sobic001G442200--Sobic007G172100 Sobic010G037200 Sobic010G037200 Sobic001G442200--Sobic010G037200 Sobic002G293100 Sobic002G293100 Sobic001G442200--Sobic002G293100 Sobic001G442200--Sobic005G171800 Sobic007G194100 Sobic007G194100 Sobic001G442200--Sobic007G194100 Sobic009G025100 Sobic009G025100 Sobic004G196800--Sobic009G025100 Sobic004G210000 Sobic004G210000 Sobic004G196800--Sobic004G210000 Sobic006G015800 Sobic006G015800 Sobic004G196800--Sobic006G015800 Sobic010G207400 Sobic010G207400 Sobic004G196800--Sobic010G207400 Sobic010G047300 Sobic010G047300 Sobic004G196800--Sobic010G047300 Sobic005G077900 Sobic005G077900 Sobic004G196800--Sobic005G077900 Sobic004G196800--Sobic002G293100 Sobic004G038900 Sobic004G038900 Sobic004G196800--Sobic004G038900 Sobic009G033500 Sobic009G033500 Sobic004G196800--Sobic009G033500 Sobic007G037200 Sobic007G037200 Sobic005G171800--Sobic007G037200 Sobic008G168400 Sobic008G168400 Sobic005G171800--Sobic008G168400 Sobic007G187100 Sobic007G187100 Sobic005G171800--Sobic007G187100 Sobic005G171800--Sobic005G032500 Sobic009G061900 Sobic009G061900 Sobic005G171800--Sobic009G061900 Sobic005G171800--Sobic004G212350 Sobic005G171800--Sobic002G293100 Sobic005G171800--Sobic002G100000 Sobic010G181900 Sobic010G181900 Sobic005G171800--Sobic010G181900 Sobic004G212350--Sobic007G187100 Sobic004G212350--Sobic009G061900 Sobic004G212350--Sobic002G100000 Sobic004G212350--Sobic008G168400 Sobic005G079300 Sobic005G079300 Sobic004G212350--Sobic005G079300 Sobic001G129900 Sobic001G129900 Sobic004G212350--Sobic001G129900 Sobic002G381600 Sobic002G381600 Sobic004G212350--Sobic002G381600 Sobic004G139700 Sobic004G139700 Sobic004G212350--Sobic004G139700 Sobic002G409300 Sobic002G409300 Sobic004G212350--Sobic002G409300 Sobic005G032500--Sobic007G037200 Sobic005G032500--Sobic002G100000 Sobic008G031400 Sobic008G031400 Sobic005G032500--Sobic008G031400 Sobic002G058900 Sobic002G058900 Sobic005G032500--Sobic002G058900 Sobic008G159300 Sobic008G159300 Sobic005G032500--Sobic008G159300 Sobic002G217000 Sobic002G217000 Sobic005G032500--Sobic002G217000 Sobic004G220900 Sobic004G220900 Sobic005G032500--Sobic004G220900 Sobic002G101200 Sobic002G101200 Sobic005G032500--Sobic002G101200 Sobic005G032500--Sobic004G212350 Sobic004G133600 Sobic004G133600 Sobic010G060100--Sobic004G133600 Sobic007G205400 Sobic007G205400 Sobic010G060100--Sobic007G205400 Sobic002G192600 Sobic002G192600 Sobic010G060100--Sobic002G192600 Sobic010G060100--Sobic001G129900 Sobic010G060100--Sobic002G381600 Sobic010G060100--Sobic007G187100 Sobic010G060100--Sobic009G061900 Sobic009G052400 Sobic009G052400 Sobic010G060100--Sobic009G052400 Sobic010G060100--Sobic005G079300 Sobic005G089101 Sobic005G089101 Sobic002G100000--Sobic005G089101 Sobic002G100000--Sobic004G212350 Sobic002G100000--Sobic007G037200 Sobic002G100000--Sobic010G181900 Sobic002G100000--Sobic005G032500 Sobic002G100000--Sobic002G217000 Sobic002G100000--Sobic008G168400 Sobic002G100000--Sobic004G220900 Sobic002G100000--Sobic007G187100 Sobic010G118200 Sobic010G118200 Sobic001G425900--Sobic010G118200 Sobic006G271400 Sobic006G271400 Sobic001G425900--Sobic006G271400 Sobic001G425900--Sobic009G033500 Sobic010G058000 Sobic010G058000 Sobic001G425900--Sobic010G058000 Sobic001G425900--Sobic002G101200 Sobic002G166800 Sobic002G166800 Sobic001G425900--Sobic002G166800 Sobic010G209300 Sobic010G209300 Sobic001G425900--Sobic010G209300 Sobic006G031000 Sobic006G031000 Sobic001G425900--Sobic006G031000 Sobic007G091200 Sobic007G091200 Sobic001G425900--Sobic007G091200 Sobic010G084800--Sobic010G047300 Sobic008G109600 Sobic008G109600 Sobic010G084800--Sobic008G109600 Sobic002G161600 Sobic002G161600 Sobic010G084800--Sobic002G161600 Sobic001G274025 Sobic001G274025 Sobic010G084800--Sobic001G274025 Sobic006G264800 Sobic006G264800 Sobic010G084800--Sobic006G264800 Sobic009G021400 Sobic009G021400 Sobic010G084800--Sobic009G021400 Sobic010G084800--Sobic007G205400 Sobic010G084800--Sobic010G060100 Sobic010G084800--Sobic002G409300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.