Gene annotation
Transcriptome id Sobic.001G442200.1
Synonym ATPAP3, PAP3, Sb01g041550
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
Ser/Thr protein phosphatase family protein, putative, expressed
UniProt C5WRL4
Pfam PF00149
Panther DB PTHR10161 PTHR10161:SF14
NCBI CDD KOG2679; Purple (tartrate-resistant) acid phosphatase
KEGG Orthology K14379; tartrate-resistant acid phosphatase type 5
Gene Ontology GO:0016787; hydrolase activity


Orthologs (automatic annotation)
TAIR AT1G14700 : purple acid phosphatase 3
RAP-DB (Rice) LOC_Os03g13540.1 : Ser/Thr protein phosphatase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a001499
Brachypodium KQK22661 , KQK22660 , KQK22663 , KQK22662
Barley HORVU4Hr1G064380.7 , HORVU4Hr1G064380.6 , HORVU4Hr1G064380.5 , HORVU4Hr1G064380.3 , HORVU4Hr1G064380.2 , HORVU4Hr1G064380.1 , HORVU4Hr1G064340.1
Wheat TraesCS4B02G230000 , TraesCS4B02G230000
Populus PNT24531 , PNT24529


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cDNA sequences
Sobic.001G442200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G150700 Leucine Rich Repeat family protein, expressed K15082: DNA repair protein RAD7
2 Sobic.004G196800 tetratricopeptide repeat containing protein, putative, expressed -
3 Sobic.005G098700 glycosyl hydrolase, putative, expressed K01183: chitinase
4 Sobic.010G168500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
5 Sobic.007G172100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@vignain precursor, putative, expressed K16292: CEP, KDEL-tailed cysteine endopeptidase
6 Sobic.010G037200 SAM dependent carboxyl methyltransferase, putative, expressed -
7 Sobic.002G293100 ZOS9-17 - C2H2 zinc finger protein, expressed -
8 Sobic.005G171800 OsFBDUF20 - F-box and DUF domain containing protein, expressed -
9 Sobic.007G194100 nucleotide pyrophosphatase/phosphodiesterase, putative, expressed -
10 Sobic.004G294100 ZOS2-14 - C2H2 zinc finger protein, expressed -
11 Sobic.008G039700 expressed protein -
12 Sobic.004G212350 - -
13 Sobic.009G025100 transporter, putative, expressed -
14 Sobic.003G063900 - -
15 Sobic.005G021100 - -
16 Sobic.009G071600 no apical meristem protein, putative, expressed -
17 Sobic.009G077250 - -
18 Sobic.004G139700 OsSCP7 - Putative Serine Carboxypeptidase homologue, expressed K16296: serine carboxypeptidase-like clade I
19 Sobic.005G174000 - -
20 Sobic.002G089500 DEF8 - Defensin and Defensin-like DEFL family, expressed -


Gene co-expression network
sample Sobic001G442200 Sobic001G442200 Sobic007G150700 Sobic007G150700 Sobic001G442200--Sobic007G150700 Sobic004G196800 Sobic004G196800 Sobic001G442200--Sobic004G196800 Sobic005G098700 Sobic005G098700 Sobic001G442200--Sobic005G098700 Sobic010G168500 Sobic010G168500 Sobic001G442200--Sobic010G168500 Sobic007G172100 Sobic007G172100 Sobic001G442200--Sobic007G172100 Sobic010G037200 Sobic010G037200 Sobic001G442200--Sobic010G037200 Sobic002G293100 Sobic002G293100 Sobic001G442200--Sobic002G293100 Sobic005G171800 Sobic005G171800 Sobic001G442200--Sobic005G171800 Sobic007G194100 Sobic007G194100 Sobic001G442200--Sobic007G194100 Sobic007G150700--Sobic001G442200 Sobic007G150700--Sobic004G196800 Sobic007G150700--Sobic005G171800 Sobic004G212350 Sobic004G212350 Sobic007G150700--Sobic004G212350 Sobic005G032500 Sobic005G032500 Sobic007G150700--Sobic005G032500 Sobic010G060100 Sobic010G060100 Sobic007G150700--Sobic010G060100 Sobic002G100000 Sobic002G100000 Sobic007G150700--Sobic002G100000 Sobic001G425900 Sobic001G425900 Sobic007G150700--Sobic001G425900 Sobic010G084800 Sobic010G084800 Sobic007G150700--Sobic010G084800 Sobic009G025100 Sobic009G025100 Sobic004G196800--Sobic009G025100 Sobic004G210000 Sobic004G210000 Sobic004G196800--Sobic004G210000 Sobic006G015800 Sobic006G015800 Sobic004G196800--Sobic006G015800 Sobic010G207400 Sobic010G207400 Sobic004G196800--Sobic010G207400 Sobic010G047300 Sobic010G047300 Sobic004G196800--Sobic010G047300 Sobic005G077900 Sobic005G077900 Sobic004G196800--Sobic005G077900 Sobic004G196800--Sobic002G293100 Sobic004G038900 Sobic004G038900 Sobic004G196800--Sobic004G038900 Sobic009G033500 Sobic009G033500 Sobic004G196800--Sobic009G033500 Sobic002G161600 Sobic002G161600 Sobic005G098700--Sobic002G161600 Sobic006G264800 Sobic006G264800 Sobic005G098700--Sobic006G264800 Sobic010G031400 Sobic010G031400 Sobic005G098700--Sobic010G031400 Sobic002G172100 Sobic002G172100 Sobic005G098700--Sobic002G172100 Sobic001G261700 Sobic001G261700 Sobic005G098700--Sobic001G261700 Sobic009G057100 Sobic009G057100 Sobic005G098700--Sobic009G057100 Sobic005G147500 Sobic005G147500 Sobic005G098700--Sobic005G147500 Sobic003G294800 Sobic003G294800 Sobic005G098700--Sobic003G294800 Sobic009G058300 Sobic009G058300 Sobic005G098700--Sobic009G058300 Sobic008G039700 Sobic008G039700 Sobic010G168500--Sobic008G039700 Sobic009G071600 Sobic009G071600 Sobic010G168500--Sobic009G071600 Sobic007G034900 Sobic007G034900 Sobic010G168500--Sobic007G034900 Sobic001G259250 Sobic001G259250 Sobic010G168500--Sobic001G259250 Sobic005G153200 Sobic005G153200 Sobic010G168500--Sobic005G153200 Sobic010G200200 Sobic010G200200 Sobic010G168500--Sobic010G200200 Sobic004G142000 Sobic004G142000 Sobic010G168500--Sobic004G142000 Sobic001G037800 Sobic001G037800 Sobic010G168500--Sobic001G037800 Sobic002G338600 Sobic002G338600 Sobic010G168500--Sobic002G338600 Sobic001G200900 Sobic001G200900 Sobic007G172100--Sobic001G200900 Sobic009G061900 Sobic009G061900 Sobic007G172100--Sobic009G061900 Sobic009G052400 Sobic009G052400 Sobic007G172100--Sobic009G052400 Sobic005G174000 Sobic005G174000 Sobic007G172100--Sobic005G174000 Sobic004G133600 Sobic004G133600 Sobic007G172100--Sobic004G133600 Sobic005G186300 Sobic005G186300 Sobic007G172100--Sobic005G186300 Sobic007G172100--Sobic002G293100 Sobic002G192600 Sobic002G192600 Sobic007G172100--Sobic002G192600 Sobic004G171600 Sobic004G171600 Sobic007G172100--Sobic004G171600 Sobic010G037200--Sobic009G025100 Sobic010G037200--Sobic008G039700 Sobic010G227400 Sobic010G227400 Sobic010G037200--Sobic010G227400 Sobic010G085700 Sobic010G085700 Sobic010G037200--Sobic010G085700 Sobic009G040000 Sobic009G040000 Sobic010G037200--Sobic009G040000 Sobic001G068200 Sobic001G068200 Sobic010G037200--Sobic001G068200 Sobic001G253400 Sobic001G253400 Sobic010G037200--Sobic001G253400 Sobic001G158600 Sobic001G158600 Sobic010G037200--Sobic001G158600 Sobic006G051750 Sobic006G051750 Sobic010G037200--Sobic006G051750 Sobic002G293100--Sobic004G171600 Sobic002G293100--Sobic005G077900 Sobic002G293100--Sobic005G174000 Sobic002G293100--Sobic001G200900 Sobic005G021100 Sobic005G021100 Sobic002G293100--Sobic005G021100 Sobic002G293100--Sobic009G061900 Sobic001G489075 Sobic001G489075 Sobic002G293100--Sobic001G489075 Sobic002G089500 Sobic002G089500 Sobic002G293100--Sobic002G089500 Sobic001G233600 Sobic001G233600 Sobic002G293100--Sobic001G233600 Sobic007G037200 Sobic007G037200 Sobic005G171800--Sobic007G037200 Sobic008G168400 Sobic008G168400 Sobic005G171800--Sobic008G168400 Sobic007G187100 Sobic007G187100 Sobic005G171800--Sobic007G187100 Sobic005G171800--Sobic005G032500 Sobic005G171800--Sobic009G061900 Sobic005G171800--Sobic004G212350 Sobic005G171800--Sobic002G293100 Sobic005G171800--Sobic002G100000 Sobic010G181900 Sobic010G181900 Sobic005G171800--Sobic010G181900 Sobic002G240700 Sobic002G240700 Sobic007G194100--Sobic002G240700 Sobic007G194100--Sobic010G037200 Sobic009G199300 Sobic009G199300 Sobic007G194100--Sobic009G199300 Sobic002G308400 Sobic002G308400 Sobic007G194100--Sobic002G308400 Sobic007G194100--Sobic005G098700 Sobic007G194100--Sobic009G025100 Sobic004G067900 Sobic004G067900 Sobic007G194100--Sobic004G067900 Sobic007G208200 Sobic007G208200 Sobic007G194100--Sobic007G208200 Sobic007G194100--Sobic001G442200
Octagon: transcription factors


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