Gene annotation
Transcriptome id Sobic.007G172100.1
Synonym Sb07g024430
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)" (PubMedID : 27586543)
vignain precursor, putative, expressed
UniProt C5YNA1
Pfam PF08246 PF00112
Panther DB PTHR12411 PTHR12411:SF366
NCBI CDD KOG1543; Cysteine proteinase Cathepsin L
KEGG Orthology K16292; CEP, KDEL-tailed cysteine endopeptidase
Gene Ontology GO:0008234; cysteine-type peptidase activity GO:0006508proteolysis


Orthologs (automatic annotation)
TAIR AT5G50260 : Cysteine proteinases superfamily protein
RAP-DB (Rice) LOC_Os08g44270.1 : vignain precursor, putative, expressed
MaizeGDB (Corn) Zm00025a005623 , Zm00025a040960
Brachypodium KQK03308 , KQJ94886 , KQJ88596
Barley HORVU3Hr1G091800.1 , HORVU1Hr1G084510.3 , HORVU1Hr1G084510.2 , HORVU5Hr1G095580.3 , HORVU5Hr1G095580.4 , HORVU3Hr1G039020.1 , HORVU5Hr1G095580.1 , HORVU1Hr1G084510.1 , HORVU3Hr1G088270.4 , HORVU3Hr1G088270.2 , HORVU3Hr1G088270.3 , HORVU3Hr1G088270.1 , HORVU3Hr1G088080.1 , HORVU3Hr1G088080.2 , HORVU5Hr1G095580.2
Wheat TraesCS2A02G543500 , TraesCS2B02G573700 , TraesCS3D02G342100 , TraesCS5D02G401300 , TraesCS2D02G544800
Populus -


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cDNA sequences
Sobic.007G172100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G200900 LTPL160 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
2 Sobic.009G061900 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
3 Sobic.009G052400 inorganic H+ pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
4 Sobic.005G174000 - -
5 Sobic.004G133600 Sugar transporter(PubMedID : 27330561)@"ZmSWEET4c(Ortholog in maize:Sosso et al., 2015(PubMedID : 31659882)@Zhang et al., 2015)"(PubMedID : 27330561)@nodulin MtN3 family protein, putative, expressed K15382: SLC50A, solute carrier family 50 (sugar transporter)
6 Sobic.005G186300 - -
7 Sobic.002G293100 ZOS9-17 - C2H2 zinc finger protein, expressed -
8 Sobic.002G192600 no apical meristem protein, putative, expressed -
9 Sobic.004G171600 helix-loop-helix DNA-binding domain containing protein, expressed -
10 Sobic.002G381600 uncharacterized glycosyl hydrolase Rv2006/MT2062, putative, expressed K01087: trehalose 6-phosphate phosphatase
11 Sobic.001G129900 indole-3-acetate beta-glucosyltransferase, putative, expressed K13692: UDP-glucose:(indol-3-yl)acetate beta-D-glucosyltransferase
12 Sobic.007G187100 terpene synthase, putative, expressed -
13 Sobic.005G077900 OsFBX411 - F-box domain containing protein, expressed -
14 Sobic.006G178400 monocopper oxidase, putative, expressed -
15 Sobic.005G021100 - -
16 Sobic.002G409300 expressed protein -
17 Sobic.007G205400 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
18 Sobic.002G078800 LTPL169 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
19 Sobic.006G080500 helix-loop-helix DNA-binding domain containing protein, expressed -
20 Sobic.001G233600 expressed protein -


Gene co-expression network
sample Sobic007G172100 Sobic007G172100 Sobic001G200900 Sobic001G200900 Sobic007G172100--Sobic001G200900 Sobic009G061900 Sobic009G061900 Sobic007G172100--Sobic009G061900 Sobic009G052400 Sobic009G052400 Sobic007G172100--Sobic009G052400 Sobic005G174000 Sobic005G174000 Sobic007G172100--Sobic005G174000 Sobic004G133600 Sobic004G133600 Sobic007G172100--Sobic004G133600 Sobic005G186300 Sobic005G186300 Sobic007G172100--Sobic005G186300 Sobic002G293100 Sobic002G293100 Sobic007G172100--Sobic002G293100 Sobic002G192600 Sobic002G192600 Sobic007G172100--Sobic002G192600 Sobic004G171600 Sobic004G171600 Sobic007G172100--Sobic004G171600 Sobic001G200900--Sobic005G174000 Sobic001G200900--Sobic004G171600 Sobic001G200900--Sobic009G061900 Sobic005G077900 Sobic005G077900 Sobic001G200900--Sobic005G077900 Sobic001G200900--Sobic005G186300 Sobic001G200900--Sobic002G192600 Sobic001G200900--Sobic002G293100 Sobic001G200900--Sobic009G052400 Sobic001G233600 Sobic001G233600 Sobic001G200900--Sobic001G233600 Sobic007G187100 Sobic007G187100 Sobic009G061900--Sobic007G187100 Sobic009G061900--Sobic005G186300 Sobic009G061900--Sobic001G200900 Sobic009G061900--Sobic002G192600 Sobic002G409300 Sobic002G409300 Sobic009G061900--Sobic002G409300 Sobic009G061900--Sobic009G052400 Sobic001G129900 Sobic001G129900 Sobic009G061900--Sobic001G129900 Sobic009G061900--Sobic004G133600 Sobic009G061900--Sobic005G174000 Sobic009G052400--Sobic001G129900 Sobic006G080500 Sobic006G080500 Sobic009G052400--Sobic006G080500 Sobic002G381600 Sobic002G381600 Sobic009G052400--Sobic002G381600 Sobic009G052400--Sobic002G192600 Sobic009G052400--Sobic004G133600 Sobic005G079300 Sobic005G079300 Sobic009G052400--Sobic005G079300 Sobic002G078800 Sobic002G078800 Sobic009G052400--Sobic002G078800 Sobic008G168400 Sobic008G168400 Sobic009G052400--Sobic008G168400 Sobic006G178400 Sobic006G178400 Sobic009G052400--Sobic006G178400 Sobic005G174000--Sobic001G200900 Sobic005G174000--Sobic004G171600 Sobic005G174000--Sobic005G077900 Sobic001G489075 Sobic001G489075 Sobic005G174000--Sobic001G489075 Sobic005G174000--Sobic001G233600 Sobic005G174000--Sobic002G293100 Sobic008G088900 Sobic008G088900 Sobic005G174000--Sobic008G088900 Sobic005G174000--Sobic009G061900 Sobic005G146966 Sobic005G146966 Sobic005G174000--Sobic005G146966 Sobic004G133600--Sobic002G192600 Sobic010G060100 Sobic010G060100 Sobic004G133600--Sobic010G060100 Sobic004G133600--Sobic009G052400 Sobic004G133600--Sobic001G129900 Sobic007G205400 Sobic007G205400 Sobic004G133600--Sobic007G205400 Sobic004G133600--Sobic002G381600 Sobic004G133600--Sobic006G080500 Sobic004G133600--Sobic005G079300 Sobic004G133600--Sobic009G061900 Sobic005G186300--Sobic002G192600 Sobic005G186300--Sobic009G061900 Sobic005G186300--Sobic007G205400 Sobic005G186300--Sobic002G409300 Sobic005G186300--Sobic001G200900 Sobic005G186300--Sobic007G187100 Sobic005G186300--Sobic004G133600 Sobic005G186300--Sobic002G078800 Sobic005G186300--Sobic005G174000 Sobic002G293100--Sobic004G171600 Sobic002G293100--Sobic005G077900 Sobic002G293100--Sobic005G174000 Sobic002G293100--Sobic001G200900 Sobic005G021100 Sobic005G021100 Sobic002G293100--Sobic005G021100 Sobic002G293100--Sobic009G061900 Sobic002G293100--Sobic001G489075 Sobic002G089500 Sobic002G089500 Sobic002G293100--Sobic002G089500 Sobic002G293100--Sobic001G233600 Sobic002G192600--Sobic004G133600 Sobic002G192600--Sobic005G186300 Sobic002G192600--Sobic009G052400 Sobic002G192600--Sobic002G078800 Sobic002G192600--Sobic001G129900 Sobic002G192600--Sobic009G061900 Sobic002G192600--Sobic007G205400 Sobic002G192600--Sobic006G080500 Sobic006G015750 Sobic006G015750 Sobic002G192600--Sobic006G015750 Sobic004G171600--Sobic005G077900 Sobic004G171600--Sobic005G174000 Sobic004G171600--Sobic001G200900 Sobic004G171600--Sobic002G293100 Sobic002G007700 Sobic002G007700 Sobic004G171600--Sobic002G007700 Sobic004G171600--Sobic001G233600 Sobic004G171600--Sobic005G021100 Sobic004G171600--Sobic008G088900 Sobic004G171600--Sobic002G089500
Octagon: transcription factors


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