Gene annotation
Transcriptome id Sobic.010G133700.1
Synonym
Functional annotation -
UniProt A0A1W0VSU1
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) -
MaizeGDB (Corn) Zm00025a042801 , Zm00025a050657
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.010G133700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G417600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@actin-depolymerizing factor, putative, expressed K05765: cofilin
2 Sobic.003G036700 cytokinin dehydrogenase precursor, putative, expressed K00279: cytokinin dehydrogenase
3 Sobic.005G175200 TKL_IRAK_DUF26-lc.25 - DUF26 kinases have homology to DUF26 containing loci, expressed -
4 Sobic.003G095600 glycosyltransferase, putative, expressed -
5 Sobic.006G147400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@A NAC transcription factor controlling cell collapse and secondary cell wall composition in the stem(PubMedID : 30309900)@We identified D as a single gene encoding a NAC transcription factor that controls the expression of genes involved in plant PCD (programmed cell death).(PubMedID : 30150370)@"we apply fine-mapping and genome-wide association study (GWAS) to identify a candidate gene underlying D, and use nearly isogenic lines (NILs) to characterize the transcriptional, compositional, and agronomic effects of variation at the D locus."(PubMedID : 31245734)@no apical meristem protein, putative, expressed -
6 Sobic.010G198100 expressed protein -
7 Sobic.001G082500 cytochrome P450, putative, expressed -
8 Sobic.007G194800 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@triacylglycerol lipase precursor, putative, expressed K01052: lysosomal acid lipase/cholesteryl ester hydrolase
9 Sobic.006G132400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@CHIT3 - Chitinase family protein precursor, expressed K01183: chitinase
10 Sobic.001G196700 OsProCP3 - Putative Lysosomal Pro-x Carboxypeptidase homologue, expressed -
11 Sobic.003G272600 expressed protein -
12 Sobic.005G102700 - -
13 Sobic.003G376000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@amino acid transporter, putative, expressed -
14 Sobic.002G134900 L1P family of ribosomal proteins domain containing protein, expressed K02865: RP-L10Ae, large subunit ribosomal protein L10Ae
15 Sobic.006G151001 - -
16 Sobic.003G331700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@thaumatin, putative, expressed -
17 Sobic.003G356400 expressed protein -
18 Sobic.009G208500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@DUF584 domain containing protein, putative, expressed -
19 Sobic.001G280000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsSCP46 - Putative Serine Carboxypeptidase homologue, expressed K16296: serine carboxypeptidase-like clade I
20 Sobic.008G154400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -


Gene co-expression network
sample Sobic010G133700 Sobic010G133700 Sobic001G417600 Sobic001G417600 Sobic010G133700--Sobic001G417600 Sobic003G036700 Sobic003G036700 Sobic010G133700--Sobic003G036700 Sobic005G175200 Sobic005G175200 Sobic010G133700--Sobic005G175200 Sobic003G095600 Sobic003G095600 Sobic010G133700--Sobic003G095600 Sobic006G147400 Sobic006G147400 Sobic010G133700--Sobic006G147400 Sobic010G198100 Sobic010G198100 Sobic010G133700--Sobic010G198100 Sobic001G082500 Sobic001G082500 Sobic010G133700--Sobic001G082500 Sobic007G194800 Sobic007G194800 Sobic010G133700--Sobic007G194800 Sobic006G132400 Sobic006G132400 Sobic010G133700--Sobic006G132400 Sobic001G417600--Sobic010G133700 Sobic006G139000 Sobic006G139000 Sobic001G417600--Sobic006G139000 Sobic001G280000 Sobic001G280000 Sobic001G417600--Sobic001G280000 Sobic001G417600--Sobic003G036700 Sobic001G417600--Sobic001G082500 Sobic009G208500 Sobic009G208500 Sobic001G417600--Sobic009G208500 Sobic001G417600--Sobic006G147400 Sobic007G178100 Sobic007G178100 Sobic001G417600--Sobic007G178100 Sobic001G417600--Sobic007G194800 Sobic003G036700--Sobic010G133700 Sobic001G196700 Sobic001G196700 Sobic003G036700--Sobic001G196700 Sobic003G036700--Sobic006G132400 Sobic003G036700--Sobic003G095600 Sobic010G168500 Sobic010G168500 Sobic003G036700--Sobic010G168500 Sobic003G036700--Sobic001G417600 Sobic003G036700--Sobic001G082500 Sobic003G376000 Sobic003G376000 Sobic003G036700--Sobic003G376000 Sobic003G036700--Sobic006G147400 Sobic005G169300 Sobic005G169300 Sobic005G175200--Sobic005G169300 Sobic005G110445 Sobic005G110445 Sobic005G175200--Sobic005G110445 Sobic006G132300 Sobic006G132300 Sobic005G175200--Sobic006G132300 Sobic008G186700 Sobic008G186700 Sobic005G175200--Sobic008G186700 Sobic010G237100 Sobic010G237100 Sobic005G175200--Sobic010G237100 Sobic001G381250 Sobic001G381250 Sobic005G175200--Sobic001G381250 Sobic008G154400 Sobic008G154400 Sobic003G095600--Sobic008G154400 Sobic001G166500 Sobic001G166500 Sobic003G095600--Sobic001G166500 Sobic006G096200 Sobic006G096200 Sobic003G095600--Sobic006G096200 Sobic003G095600--Sobic003G376000 Sobic009G231500 Sobic009G231500 Sobic003G095600--Sobic009G231500 Sobic003G438700 Sobic003G438700 Sobic003G095600--Sobic003G438700 Sobic006G059900 Sobic006G059900 Sobic003G095600--Sobic006G059900 Sobic004G068000 Sobic004G068000 Sobic003G095600--Sobic004G068000 Sobic001G203100 Sobic001G203100 Sobic003G095600--Sobic001G203100 Sobic006G147400--Sobic010G133700 Sobic006G147400--Sobic003G036700 Sobic006G147400--Sobic001G417600 Sobic006G147400--Sobic003G095600 Sobic006G147400--Sobic006G132400 Sobic006G147400--Sobic008G154400 Sobic006G147400--Sobic003G376000 Sobic004G214000 Sobic004G214000 Sobic006G147400--Sobic004G214000 Sobic006G147400--Sobic001G196700 Sobic010G198100--Sobic010G133700 Sobic010G198100--Sobic005G175200 Sobic010G198100--Sobic003G095600 Sobic005G102700 Sobic005G102700 Sobic010G198100--Sobic005G102700 Sobic010G198100--Sobic003G036700 Sobic010G198100--Sobic001G417600 Sobic010G049800 Sobic010G049800 Sobic010G198100--Sobic010G049800 Sobic006G151001 Sobic006G151001 Sobic010G198100--Sobic006G151001 Sobic010G198100--Sobic008G186700 Sobic001G082500--Sobic003G036700 Sobic001G082500--Sobic001G417600 Sobic001G082500--Sobic010G133700 Sobic001G082500--Sobic006G147400 Sobic001G082500--Sobic006G132400 Sobic001G082500--Sobic001G196700 Sobic001G082500--Sobic006G139000 Sobic001G082500--Sobic007G194800 Sobic001G082500--Sobic001G280000 Sobic007G194800--Sobic003G036700 Sobic007G194800--Sobic001G417600 Sobic007G194800--Sobic010G133700 Sobic007G194800--Sobic001G196700 Sobic007G194800--Sobic006G147400 Sobic007G194800--Sobic006G132400 Sobic007G194800--Sobic010G168500 Sobic009G237700 Sobic009G237700 Sobic007G194800--Sobic009G237700 Sobic007G194800--Sobic001G082500 Sobic006G132400--Sobic001G196700 Sobic006G132400--Sobic003G376000 Sobic006G132400--Sobic008G154400 Sobic005G112066 Sobic005G112066 Sobic006G132400--Sobic005G112066 Sobic007G156300 Sobic007G156300 Sobic006G132400--Sobic007G156300 Sobic002G077500 Sobic002G077500 Sobic006G132400--Sobic002G077500 Sobic007G049400 Sobic007G049400 Sobic006G132400--Sobic007G049400 Sobic001G326000 Sobic001G326000 Sobic006G132400--Sobic001G326000 Sobic010G095300 Sobic010G095300 Sobic006G132400--Sobic010G095300
Octagon: transcription factors


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