Gene annotation
Transcriptome id Sobic.001G280000.1
Synonym Sb01g027540, scpl6
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
OsSCP46 - Putative Serine Carboxypeptidase homologue, expressed
UniProt C5WQK1
Pfam PF00450
Panther DB PTHR11802 PTHR11802:SF53
NCBI CDD KOG1282; Serine carboxypeptidases (lysosomal cathepsin A)
KEGG Orthology K16296; serine carboxypeptidase-like clade I
Gene Ontology GO:0006508; proteolysis GO:0004185serine-type carboxypeptidase activity


Orthologs (automatic annotation)
TAIR AT1G73270 : serine carboxypeptidase-like 6
RAP-DB (Rice) LOC_Os10g01134.1 : OsSCP46 - Putative Serine Carboxypeptidase homologue, expressed
MaizeGDB (Corn) Zm00025a003605 , Zm00025a018116
Brachypodium KQJ96210 , PNT65292 , KQJ91815
Barley HORVU3Hr1G068270.1 , HORVU5Hr1G080090.4 , HORVU5Hr1G080090.5 , HORVU5Hr1G080090.6 , HORVU5Hr1G080090.7 , HORVU5Hr1G080090.1 , HORVU5Hr1G080090.2 , HORVU5Hr1G080090.3 , HORVU4Hr1G015490.7 , HORVU4Hr1G015490.2 , HORVU4Hr1G015490.1 , HORVU4Hr1G015490.9 , HORVU4Hr1G015490.8 , HORVU3Hr1G085160.1 , HORVU4Hr1G015490.11 , HORVU4Hr1G015490.10
Wheat TraesCSU02G023300 , TraesCS2A02G046500 , TraesCSU02G023600 , TraesCS2A02G046300 , TraesCS2B02G058400 , TraesCS2A02G046500
Populus -


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cDNA sequences
Sobic.001G280000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G139000 carboxyvinyl-carboxyphosphonate phosphorylmutase, putative, expressed -
2 Sobic.001G417600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@actin-depolymerizing factor, putative, expressed K05765: cofilin
3 Sobic.002G058500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@FAD-linked oxidoreductase protein, putative, expressed K18204: D-2-hydroxyglutarate dehydrogenase
4 Sobic.001G227800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@expressed protein -
5 Sobic.001G162700 "phosphatidylinositol phosphatase, up-regulated under severe drought stress"(PubMedID : 24655390)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@endonuclease/exonuclease/phosphatase family domain containing protein, expressed K01106: inositol-1,4,5-trisphosphate 5-phosphatase
6 Sobic.005G019800 ZF-HD protein dimerisation region containing protein, expressed -
7 Sobic.010G098100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@glycosyl hydrolases family 16, putative, expressed K08235: xyloglucan:xyloglucosyl transferase
8 Sobic.001G251900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@exonuclease, putative, expressed -
9 Sobic.003G259200 -(PubMedID : 26976818)@uncharacterized kinase mug58, putative, expressed K15918: D-glycerate 3-kinase
10 Sobic.003G219600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@ThiF family domain containing protein, putative, expressed K08337: ubiquitin-like modifier-activating enzyme ATG7
11 Sobic.002G215700 similar to Aldehyde dehydrogenase(PubMedID : 29862293)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Aldehyde dehydrogenase B4(PubMedID : 26320239)@Zinc finger(C3H4-type Ring finger) family protein(PubMedID : 26320239)@a glutamate S-semialdehyde dehydrogenase(PubMedID : 26320239)@aldehyde dehydrogenase, putative, expressed K14085: aldehyde dehydrogenase family 7 member A1
12 Sobic.001G249300 Cf2/Cf5 disease resistance protein, putative, expressed -
13 Sobic.001G280200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsSCP44 - Putative Serine Carboxypeptidase homologue, expressed K16296: serine carboxypeptidase-like clade I
14 Sobic.010G133700 - -
15 Sobic.004G188800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@expressed protein -
16 Sobic.001G483500 DUF567 domain containing protein, putative, expressed -
17 Sobic.006G100400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.003G304200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@phospholipase, patatin family, putative, expressed K14674: TAG lipase / steryl ester hydrolase / phospholipase A2 / LPA acyltransferase
19 Sobic.005G079900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@F-box domain containing protein, expressed -
20 Sobic.003G226200 neutral ceramidase precursor, putative, expressed K12349: neutral ceramidase


Gene co-expression network
sample Sobic001G280000 Sobic001G280000 Sobic006G139000 Sobic006G139000 Sobic001G280000--Sobic006G139000 Sobic001G417600 Sobic001G417600 Sobic001G280000--Sobic001G417600 Sobic002G058500 Sobic002G058500 Sobic001G280000--Sobic002G058500 Sobic001G227800 Sobic001G227800 Sobic001G280000--Sobic001G227800 Sobic001G162700 Sobic001G162700 Sobic001G280000--Sobic001G162700 Sobic005G019800 Sobic005G019800 Sobic001G280000--Sobic005G019800 Sobic010G098100 Sobic010G098100 Sobic001G280000--Sobic010G098100 Sobic001G251900 Sobic001G251900 Sobic001G280000--Sobic001G251900 Sobic003G259200 Sobic003G259200 Sobic001G280000--Sobic003G259200 Sobic006G139000--Sobic002G058500 Sobic006G139000--Sobic001G417600 Sobic006G139000--Sobic001G280000 Sobic006G139000--Sobic005G019800 Sobic001G395700 Sobic001G395700 Sobic006G139000--Sobic001G395700 Sobic003G226200 Sobic003G226200 Sobic006G139000--Sobic003G226200 Sobic005G197100 Sobic005G197100 Sobic006G139000--Sobic005G197100 Sobic003G304200 Sobic003G304200 Sobic006G139000--Sobic003G304200 Sobic009G055600 Sobic009G055600 Sobic006G139000--Sobic009G055600 Sobic010G133700 Sobic010G133700 Sobic001G417600--Sobic010G133700 Sobic001G417600--Sobic006G139000 Sobic001G417600--Sobic001G280000 Sobic003G036700 Sobic003G036700 Sobic001G417600--Sobic003G036700 Sobic001G082500 Sobic001G082500 Sobic001G417600--Sobic001G082500 Sobic009G208500 Sobic009G208500 Sobic001G417600--Sobic009G208500 Sobic006G147400 Sobic006G147400 Sobic001G417600--Sobic006G147400 Sobic007G178100 Sobic007G178100 Sobic001G417600--Sobic007G178100 Sobic007G194800 Sobic007G194800 Sobic001G417600--Sobic007G194800 Sobic002G058500--Sobic006G139000 Sobic002G058500--Sobic001G227800 Sobic002G058500--Sobic001G395700 Sobic002G058500--Sobic005G019800 Sobic002G215700 Sobic002G215700 Sobic002G058500--Sobic002G215700 Sobic004G101900 Sobic004G101900 Sobic002G058500--Sobic004G101900 Sobic002G058500--Sobic003G226200 Sobic004G124200 Sobic004G124200 Sobic002G058500--Sobic004G124200 Sobic002G058500--Sobic001G280000 Sobic001G227800--Sobic002G215700 Sobic009G226300 Sobic009G226300 Sobic001G227800--Sobic009G226300 Sobic009G054500 Sobic009G054500 Sobic001G227800--Sobic009G054500 Sobic007G187300 Sobic007G187300 Sobic001G227800--Sobic007G187300 Sobic001G227800--Sobic003G259200 Sobic002G304000 Sobic002G304000 Sobic001G227800--Sobic002G304000 Sobic005G018500 Sobic005G018500 Sobic001G227800--Sobic005G018500 Sobic006G100332 Sobic006G100332 Sobic001G227800--Sobic006G100332 Sobic003G219600 Sobic003G219600 Sobic001G227800--Sobic003G219600 Sobic001G280200 Sobic001G280200 Sobic001G162700--Sobic001G280200 Sobic001G249300 Sobic001G249300 Sobic001G162700--Sobic001G249300 Sobic001G162700--Sobic010G098100 Sobic009G029600 Sobic009G029600 Sobic001G162700--Sobic009G029600 Sobic001G162700--Sobic003G259200 Sobic004G255000 Sobic004G255000 Sobic001G162700--Sobic004G255000 Sobic001G483500 Sobic001G483500 Sobic001G162700--Sobic001G483500 Sobic006G030700 Sobic006G030700 Sobic001G162700--Sobic006G030700 Sobic001G412700 Sobic001G412700 Sobic001G162700--Sobic001G412700 Sobic003G025900 Sobic003G025900 Sobic005G019800--Sobic003G025900 Sobic005G019800--Sobic002G058500 Sobic005G019800--Sobic006G139000 Sobic005G019800--Sobic001G227800 Sobic005G019800--Sobic001G280000 Sobic003G272600 Sobic003G272600 Sobic005G019800--Sobic003G272600 Sobic005G019800--Sobic001G395700 Sobic003G356400 Sobic003G356400 Sobic005G019800--Sobic003G356400 Sobic005G019800--Sobic002G215700 Sobic010G098100--Sobic001G483500 Sobic005G151700 Sobic005G151700 Sobic010G098100--Sobic005G151700 Sobic001G212000 Sobic001G212000 Sobic010G098100--Sobic001G212000 Sobic010G098100--Sobic001G280200 Sobic010G098100--Sobic001G249300 Sobic005G152100 Sobic005G152100 Sobic010G098100--Sobic005G152100 Sobic010G098100--Sobic003G259200 Sobic010G098100--Sobic007G187300 Sobic010G098100--Sobic001G162700 Sobic001G251900--Sobic001G483500 Sobic001G251900--Sobic003G219600 Sobic004G006966 Sobic004G006966 Sobic001G251900--Sobic004G006966 Sobic006G100400 Sobic006G100400 Sobic001G251900--Sobic006G100400 Sobic001G251900--Sobic005G151700 Sobic003G259200--Sobic009G054500 Sobic003G259200--Sobic005G018500 Sobic003G259200--Sobic001G249300 Sobic003G259200--Sobic003G219600 Sobic003G259200--Sobic004G255000 Sobic003G259200--Sobic009G226300 Sobic003G259200--Sobic009G029600 Sobic003G259200--Sobic005G151700 Sobic003G259200--Sobic007G187300
Octagon: transcription factors


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