Gene annotation
Transcriptome id Sobic.002G058500.1,Sobic.002G058500.2
Synonym Sb02g004910
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
FAD-linked oxidoreductase protein, putative, expressed
UniProt A0A1B6Q9G5
Pfam PF01565 PF02913
Panther DB PTHR11748 PTHR11748:SF90
NCBI CDD -
KEGG Orthology K18204; D-2-hydroxyglutarate dehydrogenase
Gene Ontology GO:0016491; oxidoreductase activity GO:0003824catalytic activity


Orthologs (automatic annotation)
TAIR AT4G36400 : FAD-linked oxidases family protein
RAP-DB (Rice) LOC_Os07g08950.1 : FAD-linked oxidoreductase protein, putative, expressed
MaizeGDB (Corn) Zm00025a045254
Brachypodium KQK20517 , KQK20516
Barley HORVU2Hr1G104450.21 , HORVU2Hr1G104450.18 , HORVU2Hr1G104450.19 , HORVU2Hr1G104450.16 , HORVU2Hr1G104450.17 , HORVU2Hr1G104450.14 , HORVU2Hr1G104450.15 , HORVU2Hr1G104450.12 , HORVU2Hr1G104450.13 , HORVU2Hr1G104450.10 , HORVU2Hr1G104450.11 , HORVU2Hr1G104450.1 , HORVU2Hr1G104450.3 , HORVU2Hr1G104450.27 , HORVU2Hr1G104450.26 , HORVU2Hr1G104450.25 , HORVU2Hr1G104450.24 , HORVU2Hr1G104450.23 , HORVU2Hr1G104450.20 , HORVU2Hr1G104450.29 , HORVU2Hr1G104450.28 , HORVU2Hr1G104450.8 , HORVU2Hr1G104450.9 , HORVU2Hr1G104450.4 , HORVU2Hr1G104450.5 , HORVU2Hr1G104450.6 , HORVU2Hr1G104450.7 , HORVU2Hr1G104450.2 , HORVU2Hr1G104450.30 , HORVU2Hr1G104450.22
Wheat TraesCS2D02G458500 , TraesCS2D02G458500 , TraesCS2A02G457900 , TraesCS2A02G457900 , TraesCS2A02G457900 , TraesCS2B02G480200 , TraesCS2B02G480200 , TraesCS2B02G480200
Populus -


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cDNA sequences
Sobic.002G058500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G139000 carboxyvinyl-carboxyphosphonate phosphorylmutase, putative, expressed -
2 Sobic.001G227800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@expressed protein -
3 Sobic.001G395700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ proteins of unknown function domain containing protein, expressed -
4 Sobic.005G019800 ZF-HD protein dimerisation region containing protein, expressed -
5 Sobic.002G215700 similar to Aldehyde dehydrogenase(PubMedID : 29862293)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Aldehyde dehydrogenase B4(PubMedID : 26320239)@Zinc finger(C3H4-type Ring finger) family protein(PubMedID : 26320239)@a glutamate S-semialdehyde dehydrogenase(PubMedID : 26320239)@aldehyde dehydrogenase, putative, expressed K14085: aldehyde dehydrogenase family 7 member A1
6 Sobic.004G101900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@citrate synthase, putative, expressed K01647: CS, citrate synthase
7 Sobic.003G226200 neutral ceramidase precursor, putative, expressed K12349: neutral ceramidase
8 Sobic.004G124200 3-hydroxyacyl-CoA dehydrogenase, putative, expressed K10527: enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase
9 Sobic.001G280000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsSCP46 - Putative Serine Carboxypeptidase homologue, expressed K16296: serine carboxypeptidase-like clade I
10 Sobic.006G004500 arginase, putative, expressed K01476: E3.5.3.1, rocF, arginase
11 Sobic.003G304200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@phospholipase, patatin family, putative, expressed K14674: TAG lipase / steryl ester hydrolase / phospholipase A2 / LPA acyltransferase
12 Sobic.006G226400 leucoanthocyanidin reductase, putative, expressed -
13 Sobic.001G468100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
14 Sobic.003G388251 - K01166: ribonuclease T2
15 Sobic.001G321000 oxidoreductase, putative, expressed -
16 Sobic.005G079900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@F-box domain containing protein, expressed -
17 Sobic.006G199000 pathogenesis-related Bet v I family protein, putative, expressed -
18 Sobic.006G100332 - -
19 Sobic.009G226300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
20 Sobic.002G304000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@nitrilase, putative, expressed K01431: UPB1, beta-ureidopropionase


Gene co-expression network
sample Sobic002G058500 Sobic002G058500 Sobic006G139000 Sobic006G139000 Sobic002G058500--Sobic006G139000 Sobic001G227800 Sobic001G227800 Sobic002G058500--Sobic001G227800 Sobic001G395700 Sobic001G395700 Sobic002G058500--Sobic001G395700 Sobic005G019800 Sobic005G019800 Sobic002G058500--Sobic005G019800 Sobic002G215700 Sobic002G215700 Sobic002G058500--Sobic002G215700 Sobic004G101900 Sobic004G101900 Sobic002G058500--Sobic004G101900 Sobic003G226200 Sobic003G226200 Sobic002G058500--Sobic003G226200 Sobic004G124200 Sobic004G124200 Sobic002G058500--Sobic004G124200 Sobic001G280000 Sobic001G280000 Sobic002G058500--Sobic001G280000 Sobic006G139000--Sobic002G058500 Sobic001G417600 Sobic001G417600 Sobic006G139000--Sobic001G417600 Sobic006G139000--Sobic001G280000 Sobic006G139000--Sobic005G019800 Sobic006G139000--Sobic001G395700 Sobic006G139000--Sobic003G226200 Sobic005G197100 Sobic005G197100 Sobic006G139000--Sobic005G197100 Sobic003G304200 Sobic003G304200 Sobic006G139000--Sobic003G304200 Sobic009G055600 Sobic009G055600 Sobic006G139000--Sobic009G055600 Sobic001G227800--Sobic002G215700 Sobic009G226300 Sobic009G226300 Sobic001G227800--Sobic009G226300 Sobic009G054500 Sobic009G054500 Sobic001G227800--Sobic009G054500 Sobic007G187300 Sobic007G187300 Sobic001G227800--Sobic007G187300 Sobic003G259200 Sobic003G259200 Sobic001G227800--Sobic003G259200 Sobic002G304000 Sobic002G304000 Sobic001G227800--Sobic002G304000 Sobic005G018500 Sobic005G018500 Sobic001G227800--Sobic005G018500 Sobic006G100332 Sobic006G100332 Sobic001G227800--Sobic006G100332 Sobic003G219600 Sobic003G219600 Sobic001G227800--Sobic003G219600 Sobic001G395700--Sobic002G058500 Sobic003G012300 Sobic003G012300 Sobic001G395700--Sobic003G012300 Sobic001G395700--Sobic002G215700 Sobic001G395700--Sobic006G139000 Sobic001G395700--Sobic001G227800 Sobic002G195000 Sobic002G195000 Sobic001G395700--Sobic002G195000 Sobic001G395700--Sobic004G101900 Sobic005G231900 Sobic005G231900 Sobic001G395700--Sobic005G231900 Sobic001G395700--Sobic003G226200 Sobic003G025900 Sobic003G025900 Sobic005G019800--Sobic003G025900 Sobic005G019800--Sobic002G058500 Sobic005G019800--Sobic006G139000 Sobic005G019800--Sobic001G227800 Sobic005G019800--Sobic001G280000 Sobic003G272600 Sobic003G272600 Sobic005G019800--Sobic003G272600 Sobic005G019800--Sobic001G395700 Sobic003G356400 Sobic003G356400 Sobic005G019800--Sobic003G356400 Sobic005G019800--Sobic002G215700 Sobic002G215700--Sobic001G227800 Sobic002G215700--Sobic009G054500 Sobic002G215700--Sobic009G226300 Sobic002G215700--Sobic004G101900 Sobic002G215700--Sobic002G304000 Sobic002G215700--Sobic006G100332 Sobic003G138200 Sobic003G138200 Sobic002G215700--Sobic003G138200 Sobic003G148800 Sobic003G148800 Sobic002G215700--Sobic003G148800 Sobic002G215700--Sobic005G018500 Sobic004G101900--Sobic002G304000 Sobic004G101900--Sobic002G215700 Sobic001G325200 Sobic001G325200 Sobic004G101900--Sobic001G325200 Sobic004G101900--Sobic009G226300 Sobic004G101900--Sobic009G054500 Sobic008G062200 Sobic008G062200 Sobic004G101900--Sobic008G062200 Sobic004G101900--Sobic003G148800 Sobic004G101900--Sobic004G124200 Sobic001G015500 Sobic001G015500 Sobic004G101900--Sobic001G015500 Sobic009G234800 Sobic009G234800 Sobic003G226200--Sobic009G234800 Sobic003G226200--Sobic002G058500 Sobic005G079900 Sobic005G079900 Sobic003G226200--Sobic005G079900 Sobic007G041400 Sobic007G041400 Sobic003G226200--Sobic007G041400 Sobic001G265600 Sobic001G265600 Sobic003G226200--Sobic001G265600 Sobic002G415900 Sobic002G415900 Sobic003G226200--Sobic002G415900 Sobic007G068100 Sobic007G068100 Sobic003G226200--Sobic007G068100 Sobic003G226200--Sobic002G215700 Sobic003G226200--Sobic004G101900 Sobic003G388251 Sobic003G388251 Sobic004G124200--Sobic003G388251 Sobic004G124200--Sobic004G101900 Sobic004G124200--Sobic001G325200 Sobic004G124200--Sobic001G015500 Sobic009G161000 Sobic009G161000 Sobic004G124200--Sobic009G161000 Sobic010G043400 Sobic010G043400 Sobic004G124200--Sobic010G043400 Sobic006G199000 Sobic006G199000 Sobic004G124200--Sobic006G199000 Sobic004G124200--Sobic007G068100 Sobic005G178100 Sobic005G178100 Sobic004G124200--Sobic005G178100 Sobic001G280000--Sobic006G139000 Sobic001G280000--Sobic001G417600 Sobic001G280000--Sobic002G058500 Sobic001G280000--Sobic001G227800 Sobic001G162700 Sobic001G162700 Sobic001G280000--Sobic001G162700 Sobic001G280000--Sobic005G019800 Sobic010G098100 Sobic010G098100 Sobic001G280000--Sobic010G098100 Sobic001G251900 Sobic001G251900 Sobic001G280000--Sobic001G251900 Sobic001G280000--Sobic003G259200
Octagon: transcription factors


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